LOCUS       NM_001319203            2385 bp    mRNA    linear   ROD 07-AUG-2023
DEFINITION  Mus musculus zinc finger protein 873 (Zfp873), transcript variant
            1, mRNA.
ACCESSION   NM_001319203 XM_011243503
VERSION     NM_001319203.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2385)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2385)
  AUTHORS   Katayama S, Tomaru Y, Kasukawa T, Waki K, Nakanishi M, Nakamura M,
            Nishida H, Yap CC, Suzuki M, Kawai J, Suzuki H, Carninci P,
            Hayashizaki Y, Wells C, Frith M, Ravasi T, Pang KC, Hallinan J,
            Mattick J, Hume DA, Lipovich L, Batalov S, Engstrom PG, Mizuno Y,
            Faghihi MA, Sandelin A, Chalk AM, Mottagui-Tabar S, Liang Z,
            Lenhard B and Wahlestedt C.
  CONSRTM   RIKEN Genome Exploration Research Group; Genome Science Group
            (Genome Network Project Core Group); FANTOM Consortium
  TITLE     Antisense transcription in the mammalian transcriptome
  JOURNAL   Science 309 (5740), 1564-1566 (2005)
   PUBMED   16141073
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC171183.6 and BC090848.1.
            
            On Jan 29, 2016 this sequence version replaced XM_011243503.1.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (1).
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR5189682.106712.1,
                                           SRR7345562.167415.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849381, SAMN00849382
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-107               AC171183.6         180143-180249
            108-234             AC171183.6         190390-190516
            235-295             AC171183.6         190703-190763
            296-2362            AC171183.6         191537-193603
            2363-2385           BC090848.1         1946-1968
FEATURES             Location/Qualifiers
     source          1..2385
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="10"
                     /map="10 39.72 cM"
     gene            1..2385
                     /gene="Zfp873"
                     /note="zinc finger protein 873"
                     /db_xref="GeneID:408062"
                     /db_xref="MGI:MGI:3040689"
     exon            1..107
                     /gene="Zfp873"
                     /inference="alignment:Splign:2.1.0"
     CDS             105..2108
                     /gene="Zfp873"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /codon_start=1
                     /product="zinc finger protein 873 isoform 1"
                     /protein_id="NP_001306132.1"
                     /db_xref="CCDS:CCDS36009.2"
                     /db_xref="GeneID:408062"
                     /db_xref="MGI:MGI:3040689"
                     /translation="MAAVTYEDVHVNFTHEEWALLDSSQKSLYKDVMLETCRNLTAIG
                     YRLEDHNIEEHCQSSRRPGRYICNCGYKPCENEDHGKKQCSFACNSFLQMYERIYNEE
                     KAYECNQYSKAFVNFHSLPQHAKNHPREQPYECNHCGKAYVSPSSQIHKRSHVGEKPY
                     ECSKCGKAFENDNHLQNREKHHTLEKLFECSQCGKAFASRSYLPIHRRIHTGEKPYEC
                     TQCGKAFTSRSYLKIHKSVHTGEKPYECNQCSKAFANFYSLRQHEKYHTREKPYECSH
                     CSKAFPSPSSLQVHERTHTGEKPYDCTECGKAFISHSSLQIHKRVHTGEKPYECTLCG
                     KAFVNRSYLEVHKRIHTGEKPYECSQCSKAFANFRSLRQHEKNHTREKPYECSQCSKA
                     FVSPCHLQIHQRTHTGEKPYDCSDCGKAFTRLSNLQVHKRTHTGQKPYCCSQCGKAFP
                     CFSNLQIHERTHTGEKPYACNQCGKAFASRASLQYHEKHHTGEKPYGCNQCGKAFVSP
                     SHLQIHQRTHTGEKPYECSQCGKAFARRSNLQIHERSHTGEKPYDCNQCGKAFASRAS
                     LQYHEKHHTGEKPYGCSQCGKGFALRSLLQVHERTHTGEKPHQCTQCGKAFVSRSYLQ
                     VHRRAHAGEKRYECIQCGKAFVYLTSLCSHRKFCAGEKPCGSA"
     exon            108..234
                     /gene="Zfp873"
                     /inference="alignment:Splign:2.1.0"
     exon            235..295
                     /gene="Zfp873"
                     /inference="alignment:Splign:2.1.0"
     exon            296..2365
                     /gene="Zfp873"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aggtttgact gtgagtctta gggaagctct tgtggttctg tgtgctgctt tttcaactgc
       61 tgctaggagc tgtgaggaga gtgggtgagc ccggaatccg caccatggct gcggtgacct
      121 atgaagatgt gcatgtgaac ttcactcatg aagaatgggc tttgctggat tcttcccaga
      181 agagtctcta caaagatgtg atgctggaaa cgtgcaggaa cctcactgct atagggtaca
      241 gattggaaga ccacaatatt gaagaacact gtcaaagttc tagaagacct gggagataca
      301 tttgtaattg tggatacaag ccctgtgaga atgaagacca tggaaagaag caatgttcct
      361 ttgcatgcaa cagttttctt caaatgtatg aaagaatcta caatgaagag aaagcctatg
      421 aatgtaatca atacagtaaa gcctttgtaa atttccatag tcttccacaa catgcaaaaa
      481 atcaccctag agaacaaccg tatgaatgta atcactgtgg taaagcctat gtgagtccca
      541 gttctcagat acacaaaaga agtcatgttg gagagaaacc ttatgaatgt tcgaagtgtg
      601 gtaaagcctt tgaaaatgac aatcatcttc aaaatcgtga aaaacatcat actcttgaga
      661 aactctttga gtgtagtcaa tgtggaaaag cctttgcaag tcgcagttat cttccaatac
      721 acagaagaat tcatactgga gagaaaccat atgaatgtac tcaatgcggt aaagcattta
      781 caagtcgcag ttatctcaaa attcataaaa gtgttcatac tggagagaaa ccgtatgaat
      841 gtaatcagtg tagtaaagcc tttgcaaatt tctatagtct tcgacaacat gaaaaatacc
      901 atactcgaga aaaaccttat gagtgtagtc attgtagtaa agcctttcca agtcccagtt
      961 ctcttcaagt acatgaaaga actcatactg gtgagaaacc ctatgattgc actgaatgtg
     1021 gtaaagcatt tataagtcac agttctcttc agatacacaa aagagttcat actggagaga
     1081 aaccatatga atgtactcta tgtggaaaag cctttgtaaa tcgaagttat cttgaagtac
     1141 acaaaagaat tcatactgga gagaaaccct atgaatgtag tcaatgcagt aaagcctttg
     1201 caaatttccg tagtcttcga caacatgaaa aaaatcatac tagagaaaaa ccctatgagt
     1261 gtagtcagtg cagtaaagcc tttgtaagtc cttgtcatct tcagattcac caaagaaccc
     1321 atacaggaga gaaaccctat gattgcagtg actgtggaaa agcctttaca cggctcagta
     1381 atctgcaggt acacaaaaga actcacacgg gacagaaacc ctattgttgc agtcagtgtg
     1441 ggaaagcctt tccgtgtttc agtaatctcc aaatccatga aagaactcac actggagaga
     1501 agccctatgc atgcaatcag tgtgggaaag ccttcgcaag tcgtgctagt cttcaatacc
     1561 atgaaaaaca tcacactgga gagaagccct atggatgtaa tcagtgtggg aaagcctttg
     1621 taagtcccag tcatcttcaa atacaccaaa gaactcacac gggtgagaaa ccctacgaat
     1681 gtagtcagtg tgggaaagcc tttgcacgtc gcagtaatct tcaaatccat gaaagaagtc
     1741 acactggaga gaagccctat gactgtaatc agtgtggaaa agccttcgca agtcgtgcta
     1801 gtcttcaata ccatgaaaaa catcacactg gagagaagcc ctatggatgt agtcagtgtg
     1861 gtaaaggctt tgcacttcgc agtcttcttc aagtacatga aagaacgcac actggagaga
     1921 agccacatca gtgcactcag tgcggtaagg cctttgtaag tcgtagttat ctgcaagtac
     1981 acagaagagc ccatgcggga gaaaagcggt atgaatgcat tcagtgtggc aaagcctttg
     2041 tatatctcac tagtctctgt agtcacagaa aattctgtgc tggagagaaa ccctgtggca
     2101 gtgcttgata caaagatgaa tggcatggtg agtaacataa gggaacagac ccgcttctgg
     2161 acctatgcac tgtaaccttg tagcacattg tttactctcc tgagaggtag tagttacatc
     2221 cctagcaggg ttgaatatat gtccatccca ggccatgtag gcggccattc ttccagagtc
     2281 agttatgtaa agtttttact cttacattta atttaaatac attaatgttt tatgattctc
     2341 cttcaataaa gtgcttaaag ttacaaaaaa aaaaaaaaaa aaaaa
//
