LOCUS       NM_001199785            3502 bp    mRNA    linear   ROD 06-AUG-2023
DEFINITION  Mus musculus zinc finger protein 839 (Zfp839), transcript variant
            2, mRNA.
ACCESSION   NM_001199785 XR_106482 XR_106749
VERSION     NM_001199785.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3502)
  AUTHORS   Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, Magen
            A, Canidio E, Pagani M, Peluso I, Lin-Marq N, Koch M, Bilio M,
            Cantiello I, Verde R, De Masi C, Bianchi SA, Cicchini J, Perroud E,
            Mehmeti S, Dagand E, Schrinner S, Nurnberger A, Schmidt K, Metz K,
            Zwingmann C, Brieske N, Springer C, Hernandez AM, Herzog S, Grabbe
            F, Sieverding C, Fischer B, Schrader K, Brockmeyer M, Dettmer S,
            Helbig C, Alunni V, Battaini MA, Mura C, Henrichsen CN,
            Garcia-Lopez R, Echevarria D, Puelles E, Garcia-Calero E, Kruse S,
            Uhr M, Kauck C, Feng G, Milyaev N, Ong CK, Kumar L, Lam M, Semple
            CA, Gyenesei A, Mundlos S, Radelof U, Lehrach H, Sarmientos P,
            Reymond A, Davidson DR, Dolle P, Antonarakis SE, Yaspo ML, Martinez
            S, Baldock RA, Eichele G and Ballabio A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC150732.1, AK013356.1, AC101875.7 and BX638090.1.
            
            On or before Dec 18, 2010 this sequence version replaced
            XR_106482.1, XR_106749.1.
            
            Transcript Variant: This variant (2) lacks an in-frame exon,
            compared to variant 1, which results in a shorter isoform (2),
            compared to isoform 1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK013356.1, SRR7974084.26573.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-330               BC150732.1         1-330
            331-1735            AK013356.1         304-1708
            1736-3193           AC101875.7         87545-89002
            3194-3502           BX638090.1         1-309               c
FEATURES             Location/Qualifiers
     source          1..3502
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="12"
                     /map="12 60.83 cM"
     gene            1..3502
                     /gene="Zfp839"
                     /gene_synonym="2810455K09Rik"
                     /note="zinc finger protein 839"
                     /db_xref="GeneID:72805"
                     /db_xref="MGI:MGI:1920055"
     exon            1..285
                     /gene="Zfp839"
                     /gene_synonym="2810455K09Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             40..2577
                     /gene="Zfp839"
                     /gene_synonym="2810455K09Rik"
                     /note="isoform 2 is encoded by transcript variant 2"
                     /codon_start=1
                     /product="zinc finger protein 839 isoform 2"
                     /protein_id="NP_001186714.1"
                     /db_xref="GeneID:72805"
                     /db_xref="MGI:MGI:1920055"
                     /translation="MAGAEPESGNVGDSGSTLPGRSHGAVRLAPLDPEQLRRVLEQVT
                     RAQPPPSTLPAAARRLRDGAQQAQRGPGAEAPRLLTPQELEAICVKVSGDTKLQERTM
                     HPLATIQLKTARQSQLPGRSPSKGVCVSSPQLLRVQALGRTESQLQFLRRSPQPPAPR
                     VFVQKMLPDLHPVPLKRAKAHETASGCGIALSPVAASGTRAVAAVPSSLLISSLHTAR
                     TEKSKKSLRVRTRSGRVSRPPRYKARDYKFIKTEDLAEGRLSDSDDYSELSVEEEEEP
                     PEKPAFFDVEVCALRPKAFKCHTCGKSYIGKGGLSRHCKLNPGHSRLQPGVLLLEKAD
                     GGPTLGCTDSKTGGLAGPEPSTAAALCVEEAESAWHTLQALKQCGREELVELVLPQLA
                     QVVTLYELLLVKVEKSPRAKPFFPAVYKEFEELYDMMKRMCQDYLSSAGAYPQEPLEI
                     SNDEVARSLGITEFLRRKETPTCSSQETEGRLEKGCVRKRARELGKLATVKKPRTVAL
                     PTDVPGYPPSANGCQQEPGPSPALATSKGSDPAAGENSLCSEGSCWEMVPASDRNAPP
                     AGSWLLVMASDDFEARNGSADPTLLFQDVSGSALYSQVAEPSRMHPAQESVFSEENIP
                     EHTMYQDSGAVWKSNSVCDMPSSGRRIGSLLFRESENAEAGALRETNQPFLDGQQASP
                     SHVLLAEAAAVPLHNTVPVNILLPAACVSKIMPEPVLHPGPGGSLSTDGGPSVGREAG
                     DISQPLSRMETHDQREPETVTAVGEALAFDISNVYQEVLSQGQEQIFIRTSNGFILSY
                     PSTIVSQEDDSVVVTNARGSILRFGPPEGVALEAMEAFLTVEAECSQ"
     exon            286..1158
                     /gene="Zfp839"
                     /gene_synonym="2810455K09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1159..1251
                     /gene="Zfp839"
                     /gene_synonym="2810455K09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1252..1401
                     /gene="Zfp839"
                     /gene_synonym="2810455K09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1402..1530
                     /gene="Zfp839"
                     /gene_synonym="2810455K09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1531..1648
                     /gene="Zfp839"
                     /gene_synonym="2810455K09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1649..3497
                     /gene="Zfp839"
                     /gene_synonym="2810455K09Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 acagacgaca cgggttcgag tcccccccca taggccgcca tggcaggcgc ggaaccggag
       61 tccgggaatg tcggcgacag tggctcgact cttcccggcc ggagccacgg cgccgtgcgc
      121 ttggctccgc tggaccccga gcagctgcgg cgggttctgg agcaggtgac tcgggcgcag
      181 ccaccgccca gcacgctgcc ggccgcggcg cggcggctcc gggacggggc ccaacaggcc
      241 cagcgggggc cgggcgccga ggccccgcgc ctgctgacac cgcaggaact tgaagctatt
      301 tgtgtcaagg tatctggtga caccaaactt caggaaagaa caatgcaccc cctggccacc
      361 atccaactca aaacagcaag acaaagtcag ctacctggga gaagccccag caagggtgtg
      421 tgtgtctcca gccctcagct gctcagggtg caggccctgg ggaggacgga gtcacagctg
      481 cagttcctta gacgctcccc tcagcctcct gctcctcggg tgtttgtaca gaagatgctg
      541 ccagacctcc atccagtccc tttgaagaga gccaaggccc acgagactgc aagcgggtgt
      601 ggtatcgctc tcagcccggt ggcagcctcg ggtacacgcg cagttgcagc tgtgccatct
      661 agcctgttga tttccagctt gcacacagca cgtactgaga agtcaaagaa atctctaagg
      721 gtaagaactc gatctggacg ggtatcccgg cctcccaggt ataaagccag agactacaag
      781 ttcatcaaaa ccgaggactt agcagaaggg cgtctgtcgg attctgatga ctactcagag
      841 ctgagcgtgg aggaagagga ggagcctccg gagaagcctg ccttcttcga cgttgaagtc
      901 tgtgccctga gacccaaggc ctttaagtgt cacacgtgtg gaaagtccta catagggaaa
      961 ggggggctgt cgaggcactg taagctcaac ccaggccata gccggctgca gcctggggtg
     1021 ctgctgttgg agaaagctga tgggggcccg accctgggct gcacagactc aaagaccgga
     1081 ggccttgccg gcccggaacc gtccacagca gctgctctct gtgtggagga ggcagagtca
     1141 gcttggcata ccctacaggc gctcaagcag tgtggccggg aggagctggt ggaattggtg
     1201 ctgcctcagc tggctcaggt ggtgacgctg tatgaacttc ttctggtgaa ggtagagaaa
     1261 agtcccaggg cgaagccttt ctttcctgct gtgtacaagg agtttgaaga gttatatgac
     1321 atgatgaaga gaatgtgtca ggattacctc agcagcgctg gtgcataccc tcaggagccc
     1381 ctggagatca gcaacgatga ggttgccagg tcattaggga tcacagagtt cctgaggagg
     1441 aaagagacac ctacgtgctc tagtcaggag acggagggga ggctggagaa gggctgtgta
     1501 cggaagaggg cgagggagct ggggaagctg gccacagtga aaaagccccg aacagtggct
     1561 ttgcccacag atgtccctgg gtatcctccc tctgccaatg gatgccagca ggagcctggg
     1621 ccctcacctg ctctagccac tagcaagggc tctgaccctg cagccggcga gaactctctc
     1681 tgctctgaag gaagctgttg ggagatggtt cctgctagtg acagaaatgc accacctgcg
     1741 ggctcgtggc ttctggtgat ggcatctgat gactttgaag ctaggaatgg ctctgcagac
     1801 cctactcttc tatttcagga tgtcagtggg tcagctcttt attcccaagt agcagagccc
     1861 agcaggatgc acccagccca ggagtctgtg ttttctgaag agaatattcc agaacacact
     1921 atgtatcagg attctggggc cgtctggaag agcaacagtg tttgtgatat gccatcatca
     1981 ggtagaagaa ttgggtctct gttgtttaga gagtctgaaa atgcagaggc aggagccctc
     2041 agggagacta atcaaccctt ccttgatggc cagcaggcca gtcccagcca tgtccttctg
     2101 gcagaggctg cagccgttcc actccataac actgtgcctg tgaacatctt gctgccggct
     2161 gcctgtgttt ccaagattat gccagaacca gttcttcatc ctgggccagg tggatcactg
     2221 tctactgatg ggggtcccag tgttggaagg gaagctggag acataagcca acccctctct
     2281 aggatggaga cacatgacca aagagagcca gagactgtga ctgcggtggg ggaagccctg
     2341 gcgtttgata tttccaatgt gtaccaggaa gtattgtctc agggacagga gcagattttt
     2401 attcggactt ccaatgggtt tattttgtcc tatccaagta ccatagtatc tcaggaagat
     2461 gacagtgtcg ttgtgaccaa tgcaaggggt tctatcctga ggtttggccc gccagaaggt
     2521 gttgctcttg aagctatgga agccttcctt actgtggagg cagagtgctc tcagtgacca
     2581 ggagtcaggg gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt
     2641 gtgtgagaga gagagagaga gagagagaga gagagagaga gagagagaga gagacagaca
     2701 gatagacaga gaatgaatgt gtgtatatgt gtgtgtatgt gtgtgtgtgt gagagagaga
     2761 gagacagaca gacagagaat taatgtgtgt gtgtgtgtga gggagggaga gagagagaga
     2821 gagagagaga gagaaagaga aagagagaga gagagaagga gaatgcgtgt gtatgaatga
     2881 gtgtatgtgg gtgttggttt ttgaggcctg gtcccatgta gcccagactg gccttgaact
     2941 cccagtcttc ctgcctctag ctacagagtg gtagtgtgtc agggatgtcc caccatgctg
     3001 ggcagaactt tgtatggatt ttatccacag aaagtcaatt tcaggcaata tttttctaat
     3061 gtgaatactg acacaaagga gccatttatt tataaagaat aatgtctgtt ctactattgc
     3121 ttttttctaa gaacctcttc acaataatgg tacatacata tttttgtctg gttttagaag
     3181 cagggtttgg cacagcccag actggtctcc gaatttgtga tgcatctgcc tgaacctgag
     3241 gctagagtta cagatgtgtt ctgtggcaga tgaagaccct cttatgtagt gatagagttt
     3301 gatggctgtc gtggttaagt tcactccatc ctcacccacc agcctgcggc cactccatgt
     3361 tgtgccacct cctcctctca gtgatgtgct gtttcttcaa cagatgttct ctgtacctct
     3421 ggattcagct agaaaactta caaagctact tgttttggca gtgttctatt gaaaagtaaa
     3481 aaagaaagtc atttgttaaa aa
//
