LOCUS       NM_001167946            2153 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus zinc finger protein 821 (Zfp821), transcript variant
            2, mRNA.
ACCESSION   NM_001167946
VERSION     NM_001167946.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2153)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2153)
  AUTHORS   Blackshaw,S., Harpavat,S., Trimarchi,J., Cai,L., Huang,H.,
            Kuo,W.P., Weber,G., Lee,K., Fraioli,R.E., Cho,S.H., Yung,R.,
            Asch,E., Ohno-Machado,L., Wong,W.H. and Cepko,C.L.
  TITLE     Genomic analysis of mouse retinal development
  JOURNAL   PLoS Biol 2 (9), E247 (2004)
   PUBMED   15226823
REFERENCE   3  (bases 1 to 2153)
  AUTHORS   Sharov,A.A., Piao,Y., Matoba,R., Dudekula,D.B., Qian,Y.,
            VanBuren,V., Falco,G., Martin,P.R., Stagg,C.A., Bassey,U.C.,
            Wang,Y., Carter,M.G., Hamatani,T., Aiba,K., Akutsu,H., Sharova,L.,
            Tanaka,T.S., Kimber,W.L., Yoshikawa,T., Jaradat,S.A., Pantano,S.,
            Nagaraja,R., Boheler,K.R., Taub,D., Hodes,R.J., Longo,D.L.,
            Schlessinger,D., Keller,J., Klotz,E., Kelsoe,G., Umezawa,A.,
            Vescovi,A.L., Rossant,J., Kunath,T., Hogan,B.L., Curci,A.,
            D'Urso,M., Kelso,J., Hide,W. and Ko,M.S.
  TITLE     Transcriptome analysis of mouse stem cells and early embryos
  JOURNAL   PLoS Biol 1 (3), E74 (2003)
   PUBMED   14691545
REFERENCE   4  (bases 1 to 2153)
  AUTHORS   Piao,Y., Ko,N.T., Lim,M.K. and Ko,M.S.
  TITLE     Construction of long-transcript enriched cDNA libraries from
            submicrogram amounts of total RNAs by a universal PCR amplification
            method
  JOURNAL   Genome Res 11 (9), 1553-1558 (2001)
   PUBMED   11544199
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC132138.2, AK136168.1 and BC059844.1.
            
            On Nov 5, 2013 this sequence version replaced NM_001167946.1.
            
            Transcript Variant: This variant (2) differs in the 5' UTR compared
            to variant 1. Variants 1, 2, and 5-8 all encode the same isoform
            (a).
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK136168.1, SRR7652917.836973.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-76                AC132138.2         80170-80245
            77-1217             AK136168.1         4-1144
            1218-2153           BC059844.1         1237-2172
FEATURES             Location/Qualifiers
     source          1..2153
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 57.21 cM"
     gene            1..2153
                     /gene="Zfp821"
                     /gene_synonym="4930566A11Rik; Znf821"
                     /note="zinc finger protein 821"
                     /db_xref="GeneID:75871"
                     /db_xref="MGI:MGI:1923121"
     exon            1..318
                     /gene="Zfp821"
                     /gene_synonym="4930566A11Rik; Znf821"
                     /inference="alignment:Splign:2.1.0"
     exon            319..381
                     /gene="Zfp821"
                     /gene_synonym="4930566A11Rik; Znf821"
                     /inference="alignment:Splign:2.1.0"
     exon            382..497
                     /gene="Zfp821"
                     /gene_synonym="4930566A11Rik; Znf821"
                     /inference="alignment:Splign:2.1.0"
     exon            498..614
                     /gene="Zfp821"
                     /gene_synonym="4930566A11Rik; Znf821"
                     /inference="alignment:Splign:2.1.0"
     CDS             575..1816
                     /gene="Zfp821"
                     /gene_synonym="4930566A11Rik; Znf821"
                     /note="isoform a is encoded by transcript variant 2"
                     /codon_start=1
                     /product="zinc finger protein 821 isoform a"
                     /protein_id="NP_001161418.1"
                     /db_xref="CCDS:CCDS40473.1"
                     /db_xref="GeneID:75871"
                     /db_xref="MGI:MGI:1923121"
                     /translation="MSRRKQTNPNKVHWDQVFAGLEEQARQAMMKTDFPGDLGSQRQA
                     IQQLRDQDSSSSDSEGDEEETTQDEVSSHTSEEDGGVVKVEKELETAEAPVSSGDALA
                     EREVTENLNSDPLLQLCQCPLCQLDCGSREQLIAHVYQHTAAVVSAKSYMCPVCGRAL
                     SSPGSLGRHLLIHSEDQRSNCAVCGARFTSHATFNSEKLPQVLNMESVPQVHSEGPSS
                     AEGKDIACSPPVYPAGILLVCNNCAAYRKLLETQTPSVRKWALRRQNEPLEVRLQRLE
                     RERTAKKSRRDNETPEEREVRRMRDREAKRLQRMQETDEQRARRLQRDREAMRLKRAN
                     ETPEKRQARLIREREAKRLKRRLEKMDMMLRAQFGQDPSAMAALAAEMNFFQLPVSGV
                     ELDSQLLGKMAFEEQNNSSLH"
     exon            615..740
                     /gene="Zfp821"
                     /gene_synonym="4930566A11Rik; Znf821"
                     /inference="alignment:Splign:2.1.0"
     exon            741..889
                     /gene="Zfp821"
                     /gene_synonym="4930566A11Rik; Znf821"
                     /inference="alignment:Splign:2.1.0"
     exon            890..994
                     /gene="Zfp821"
                     /gene_synonym="4930566A11Rik; Znf821"
                     /inference="alignment:Splign:2.1.0"
     exon            995..1161
                     /gene="Zfp821"
                     /gene_synonym="4930566A11Rik; Znf821"
                     /inference="alignment:Splign:2.1.0"
     exon            1162..2130
                     /gene="Zfp821"
                     /gene_synonym="4930566A11Rik; Znf821"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2105..2110
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zfp821"
                     /gene_synonym="4930566A11Rik; Znf821"
                     /note="hexamer: AATAAA"
     polyA_site      2130
                     /gene="Zfp821"
                     /gene_synonym="4930566A11Rik; Znf821"
                     /note="major polyA site"
ORIGIN      
        1 ggcggcggcg ggaggagagg tgaggctccg gcacgcgccc cactcgctgc gagagcgcga
       61 accgcgcgct cccgtcgtcc gcgtcgccat cttttttttt tcccccctcc gtccgtctgt
      121 ctgccgttgg ctttgtctgt ccgccgcgcc gcccctcgcc tccccgccgc cagcccggcc
      181 cgcagccacc ctctgcccac cggggccggg tcccagagag cccgggcccg gccggctgga
      241 gctgcggccg gggcccattg tcccgcggtc tgtccgtccg gaggcggagc ccagggacgc
      301 ggagcgccga ggctgcggct tcacatcact cggattcggg cgactttact ttgcttcgtg
      361 ggaacctcat cagagctgga ggtctgaaaa gaactgtgtt tggtatgcag ctatgataga
      421 agactgcctg aaagctgctt ccttgccact tcctgtggag gcctgtcttt gccatttgcg
      481 gtttctttct tcttttggtc agcaccgtac gaggaggtag tgacctgtcc aggggtgaaa
      541 ctggggaaga acggagcttg gatatcaggg aaacatgtcc cgtaggaaac agacaaaccc
      601 aaataaagtt cactgggatc aagtctttgc tgggttagaa gaacaagccc gacaggcaat
      661 gatgaaaacc gattttcctg gagaccttgg cagtcagcga caagctatcc aacaactacg
      721 agatcaggac tccagtagca gtgacagtga aggtgacgaa gaggagacca cacaagatga
      781 agtatcttcc cacacatcag aggaagatgg tggggtagtc aaagtggaaa aggaattaga
      841 gactgcggaa gcacctgtca gtagtgggga cgcactagca gagcgcgagg tcacagaaaa
      901 cctaaattct gaccccttac ttcaactctg ccagtgtccc ctctgccagc tagactgtgg
      961 gagtcgggag cagctgattg cacatgtgta ccagcatact gcagcagtgg tgagtgccaa
     1021 gagttacatg tgtcctgtct gtggccgggc ccttagctcc ccagggtctt tgggtcgcca
     1081 cctcctaatc cattcagaag atcagcggtc caactgcgct gtgtgcggag cccgttttac
     1141 cagccacgcc acttttaaca gtgagaaact ccctcaagta cttaatatgg aatccgtacc
     1201 ccaagtccac agtgaaggtc cctccagtgc tgaaggaaag gacattgcct gtagtcctcc
     1261 agtataccct gctggaattc tgcttgtttg caacaactgt gctgcttacc gcaagctact
     1321 ggaaacacag actcccagcg tacgcaagtg ggcccttcgg cgacagaatg agcctctgga
     1381 agtaaggctg caacgacttg aacgagaacg cacagccaag aagagccgtc gagacaatga
     1441 gaccccagag gagagggagg taagacgcat gagggatcgt gaagccaagc gcctgcagcg
     1501 catgcaagag acagatgagc agcgagctcg caggctgcag cgagaccggg aggccatgag
     1561 gctgaagcgg gccaatgaaa ccccagagaa gcggcaggcc cgactcattc gagagcgaga
     1621 ggctaagagg ctcaagagga gactggagaa aatggacatg atgttgcgcg ctcagtttgg
     1681 tcaggaccct tctgccatgg cagccttagc agccgaaatg aacttcttcc agttgcccgt
     1741 gagtggggta gagttggaca gccagcttct agggaaaatg gccttcgaag agcagaacaa
     1801 cagctctctg cactgaacca caccctcttg cctgacctcc catccactcc agccctcggg
     1861 gattggtgct gcagtcactc aggaggccac agtccttgct gccacaggca ggtccgggtt
     1921 ggttgcaggg aaacctgtgc accctctgca tttgggaaaa ggatggggtc aggaggggac
     1981 ctggctcaat gcagttctgg acaagggagc aggcactcca gaaacctgga ctcttcagcc
     2041 cacggtggca ggccaggact atgggactgt gggacccagt atggtccatg aagctgtgag
     2101 ggcaaataaa ttaattttat ctttactggc aaaaaaaaaa aaaaaaaaaa aaa
//
