LOCUS       NM_023363               3183 bp    mRNA    linear   ROD 24-DEC-2024
DEFINITION  Mus musculus zinc finger protein 788 (Zfp788), transcript variant
            8, mRNA.
ACCESSION   NM_023363
VERSION     NM_023363.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3183)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3183)
  AUTHORS   Guo,G., Huss,M., Tong,G.Q., Wang,C., Li Sun,L., Clarke,N.D. and
            Robson,P.
  TITLE     Resolution of cell fate decisions revealed by single-cell gene
            expression analysis from zygote to blastocyst
  JOURNAL   Dev Cell 18 (4), 675-685 (2010)
   PUBMED   20412781
REFERENCE   3  (bases 1 to 3183)
  AUTHORS   Yokoyama,S., Ito,Y., Ueno-Kudoh,H., Shimizu,H., Uchibe,K.,
            Albini,S., Mitsuoka,K., Miyaki,S., Kiso,M., Nagai,A., Hikata,T.,
            Osada,T., Fukuda,N., Yamashita,S., Harada,D., Mezzano,V., Kasai,M.,
            Puri,P.L., Hayashizaki,Y., Okado,H., Hashimoto,M. and Asahara,H.
  TITLE     A systems approach reveals that the myogenesis genome network is
            regulated by the transcriptional repressor RP58
  JOURNAL   Dev Cell 17 (6), 836-848 (2009)
   PUBMED   20059953
REFERENCE   4  (bases 1 to 3183)
  AUTHORS   Piao,Y., Ko,N.T., Lim,M.K. and Ko,M.S.
  TITLE     Construction of long-transcript enriched cDNA libraries from
            submicrogram amounts of total RNAs by a universal PCR amplification
            method
  JOURNAL   Genome Res 11 (9), 1553-1558 (2001)
   PUBMED   11544199
REFERENCE   5  (bases 1 to 3183)
  AUTHORS   Agata,Y., Matsuda,E. and Shimizu,A.
  TITLE     Rapid and efficient cloning of cDNAs encoding Kruppel-like zinc
            finger proteins by degenerate PCR
  JOURNAL   Gene 213 (1-2), 55-64 (1998)
   PUBMED   9630514
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK082981.1, AC108827.10 and AI605193.1.
            
            On Feb 9, 2018 this sequence version replaced NM_023363.2.
            
            Transcript Variant: This variant (8) differs in the 5' UTR and uses
            an alternate splice junction compared to variant 1. The resulting
            isoform (d) is shorter at the N-terminus compared to isoform a.
            Variants 5-9 all encode the same isoform (d).
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK082981.1, ERR3363660.2481494.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN00849381
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-83                AK082981.1         2-84
            84-84               AC108827.10        118486-118486
            85-3177             AK082981.1         86-3178
            3178-3183           AI605193.1         1-6                 c
FEATURES             Location/Qualifiers
     source          1..3183
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 28.25 cM"
     gene            1..3183
                     /gene="Zfp788"
                     /gene_synonym="2810426N06Rik"
                     /note="zinc finger protein 788"
                     /db_xref="GeneID:67607"
                     /db_xref="MGI:MGI:1914857"
     exon            1..164
                     /gene="Zfp788"
                     /gene_synonym="2810426N06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            165..195
                     /gene="Zfp788"
                     /gene_synonym="2810426N06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            196..295
                     /gene="Zfp788"
                     /gene_synonym="2810426N06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            296..430
                     /gene="Zfp788"
                     /gene_synonym="2810426N06Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             397..2895
                     /gene="Zfp788"
                     /gene_synonym="2810426N06Rik"
                     /note="isoform d is encoded by transcript variant 8"
                     /codon_start=1
                     /product="zinc finger protein 788 isoform d"
                     /protein_id="NP_075852.1"
                     /db_xref="CCDS:CCDS39922.1"
                     /db_xref="GeneID:67607"
                     /db_xref="MGI:MGI:1914857"
                     /translation="MLEIYNNLACVGNKWEDQSMEDEHTNPRRSQRICKFERLYESTE
                     GDQSGEIFTKTPTLTNIFPGLKSELDESGGMQYKCEQTWKTDLNSVTSIPIYTQNLSM
                     SRSYNVCATSFGFPSSFGRYQETPVGEQHCEQKVKNCPSAKSFYIHEMNDNADIDNEH
                     KPFGRAPSSFGSCESRGRINTRKKPYECRLCSKSFMYPSLLQKHEITHSNEKPYGCLQ
                     CGKAFRNFSSLQKHKIAHTEEKPYKCHYCNKVFICQGSLQSHIRVHTGEKPYECKQCG
                     KAFRVNSSFWRHKKVHTGEKPYECKQCGKSFIYPSLLQTHERTHSAEKPYSCKQCGKA
                     FKSHSSLRVHERNHTGKKPYECKQCGRSFIYPCLLQIHERTHSGVKPYGCKQCGKAFR
                     RLSDLRVHERTHTGEKPYECKQCAKSFINRYLLKMHQKSHTGEKPYKCKICSKAFVYP
                     SLLKLHERSHTGEKPYPCKQCDKAFIFPSLLKLHERTHTGEKPYACKQCGEAFKSYNS
                     LQRHKRIHTDVKAYVCKHCSKAFICQRSLQLHNRTHTGEKPYKCEQCGNSFRYHNSLQ
                     RHKIIHTGKNLYECKQCDRSFIYPYLLQIHDRTHSGGKPYECTQCGKSYIYPSLLRIH
                     ERTHSAEKPYSCKQCGKAFKSHSSLRVHERNHTGEKPYECKQCGRSFIYPCLLQTHER
                     IHSGVKPYECKQCGKAFRGHSSFRVHKKLHSGEKPYECKQCGKCFIYPSLLRMHERTH
                     SSEKPYDCKQCGKAFKSRSSLREHERNHIEEKSYQCQQCGKIFRRYSSFQNHKQIHAI
                     QKLNECKQCGKIFIYPSFLQRHERTHICERTLCM"
     exon            431..491
                     /gene="Zfp788"
                     /gene_synonym="2810426N06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            492..3180
                     /gene="Zfp788"
                     /gene_synonym="2810426N06Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3160..3165
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zfp788"
                     /gene_synonym="2810426N06Rik"
                     /note="hexamer: TATAAA"
     polyA_site      3180
                     /gene="Zfp788"
                     /gene_synonym="2810426N06Rik"
                     /note="major polyA site"
ORIGIN      
        1 gagtgccagc gggaggcggg atttcttggc cgccatgcca ccttccaagc tctaagactg
       61 aggtagtcgc gttggagacg ttgctctgta cgaagtgcac cgctgtgaca aattatgagg
      121 caaattatgt gaagagagcg ggtgagcctg caagccgcgc tatgaggcct gaagaggatg
      181 tcggaggcct tgaagatgac tttcctgtat taagttgaca aagatagcac acatgtcaag
      241 agaagggtct caagacacac ctggcctggg tggtataaca ttggttgctg tcgagtgctt
      301 taggatttag ttgtctttga ggatgtggct gtgaacttca ccgaggaaga gtgggctttg
      361 ctggattctt ctcagaagca tctgtacaga gatgtaatgc tggaaatcta caataacctt
      421 gcttgtgtcg gaaacaaatg ggaagaccaa agcatggaag atgagcacac aaatcctagg
      481 agaagtcaaa gaatatgtaa gtttgagaga ctctatgaga gtactgaagg tgatcaatct
      541 ggagaaatct tcaccaagac accaactctg acaaacatct tccctggtct aaaatctgag
      601 cttgatgaaa gtggcgggat gcaatataaa tgtgaacaga cttggaaaac agacctgaat
      661 tctgttacaa gtattccaat atatacacaa aatctcagta tgagtaggtc ttataacgtt
      721 tgtgccacat cctttggttt tcccagctca tttggaagat atcaagaaac tcctgttgga
      781 gaacagcact gtgaacagaa ggtaaaaaac tgtccttcag ctaaatcatt ttacatccat
      841 gaaatgaatg acaatgcaga catcgataat gaacacaaac catttggtag agctccgagc
      901 tcttttggtt cctgtgaaag tcgtggaaga attaatacaa ggaaaaagcc ctatgaatgt
      961 aggctgtgta gtaaatcttt catgtatcct tctttacttc aaaaacatga aataactcat
     1021 tccaatgaaa aaccctacgg gtgcctacag tgtggtaaag ctttcagaaa tttcagttct
     1081 cttcaaaaac ataaaatagc tcatactgag gaaaagcctt ataaatgtca ttattgtaat
     1141 aaagtgttca tctgtcaggg atcacttcag tcacatataa gagttcacac tggggaaaag
     1201 ccttacgaat gtaaacagtg tgggaaagcc tttagagtta acagttcctt ttggcgccat
     1261 aaaaaagttc atactgggga aaagccctat gaatgtaaac aatgtggtaa gtcctttatt
     1321 tatccttctc tacttcaaac acatgaaaga actcacagtg cagaaaagcc ctatagctgt
     1381 aaacaatgtg gtaaggcctt taaatctcac agttcccttc gagtccacga aagaaaccat
     1441 actgggaaaa agccctatga atgtaaacaa tgtggcaggt cctttattta tccctgctta
     1501 ctccagattc atgaacgaac tcacagtggt gtgaaaccct acggatgtaa acagtgtggg
     1561 aaagcgttca ggcgcctcag tgaccttcga gtccatgaaa gaactcatac cggggaaaaa
     1621 ccttatgaat gtaagcagtg cgctaaatct tttattaatc ggtatttgct taaaatgcat
     1681 caaaagtctc atactggcga gaaaccctat aagtgtaaga tttgcagcaa agccttcgtt
     1741 tatccctcct tacttaaatt gcatgagaga tctcacactg gggaaaagcc ctatccatgt
     1801 aaacaatgtg ataaagcctt catttttccc tccttactta aactgcatga aagaactcac
     1861 actggggaaa aaccctatgc ctgtaaacag tgtggtgaag ccttcaaaag ttacaactcc
     1921 cttcagagac ataaaagaat tcatactgac gtaaaggctt atgtatgtaa acactgtagc
     1981 aaagccttca tatgccagag gtcccttcag ttacataata gaactcatac cggagaaaaa
     2041 ccatataaat gtgaacagtg tggtaactcc ttcagatatc acaattccct tcaaagacat
     2101 aaaataattc acactgggaa aaacctctat gaatgtaaac agtgtgacag gtccttcatt
     2161 tatccatatt tactccaaat acatgataga acgcactctg ggggaaaacc atatgaatgt
     2221 acacagtgtg gtaagtccta tatttatcct tctctacttc gaatacatga aaggactcac
     2281 agtgcagaaa aaccctatag ctgtaaacaa tgtggtaagg cctttaaatc tcacagttcc
     2341 cttcgggtcc atgaaagaaa ccatactggg gaaaagccct atgaatgtaa acaatgtggc
     2401 aggtccttta tttatccttg cttactccag acccatgaaa gaattcacag tggtgtgaaa
     2461 ccctacgaat gtaaacagtg tgggaaagcc tttagaggtc atagttcctt tcgggtccat
     2521 aaaaaacttc acagtgggga aaagccctat gaatgcaaac aatgtggtaa gtgcttcatt
     2581 tatccatcct tacttcgaat gcatgaaaga actcatagta gtgaaaaacc ctatgattgt
     2641 aaacaatgtg gtaaggcctt taaatctcgt agttccctcc gagaacatga aagaaaccat
     2701 attgaggaaa aatcctatca gtgtcaacag tgtggtaaaa tcttcagacg ttatagttca
     2761 tttcaaaacc ataaacaaat ccatgctata caaaaactca atgaatgcaa acaatgtggt
     2821 aagatcttca tttatccttc ttttcttcag aggcatgaaa gaactcacat ttgtgaaaga
     2881 accctatgta tgtaaacaat gtgattaaat ctttgccata tcacaattct tttaggagag
     2941 gtaaatctca tttgggagaa tagatattga ataatgtgat aaattctttt tacagttatc
     3001 aactgcagag aaaaatttat atgtaacagt atgagtataa agtgggatag ccttctgaag
     3061 taatcatcct tttcaaatgt atggaataac tcataatgaa gtagaaccat gtttcctacg
     3121 acattaaaaa attgttatgt tagaagggaa ttctgtgaat ataaacaatg tgaaaactca
     3181 aaa
//
