LOCUS       NM_001111029            2770 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Mus musculus zinc finger protein 661 (Zfp661), transcript variant
            2, mRNA.
ACCESSION   NM_001111029
VERSION     NM_001111029.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2770)
  AUTHORS   Guo,G., Huss,M., Tong,G.Q., Wang,C., Li Sun,L., Clarke,N.D. and
            Robson,P.
  TITLE     Resolution of cell fate decisions revealed by single-cell gene
            expression analysis from zygote to blastocyst
  JOURNAL   Dev Cell 18 (4), 675-685 (2010)
   PUBMED   20412781
REFERENCE   2  (bases 1 to 2770)
  AUTHORS   Yokoyama,S., Ito,Y., Ueno-Kudoh,H., Shimizu,H., Uchibe,K.,
            Albini,S., Mitsuoka,K., Miyaki,S., Kiso,M., Nagai,A., Hikata,T.,
            Osada,T., Fukuda,N., Yamashita,S., Harada,D., Mezzano,V., Kasai,M.,
            Puri,P.L., Hayashizaki,Y., Okado,H., Hashimoto,M. and Asahara,H.
  TITLE     A systems approach reveals that the myogenesis genome network is
            regulated by the transcriptional repressor RP58
  JOURNAL   Dev Cell 17 (6), 836-848 (2009)
   PUBMED   20059953
REFERENCE   3  (bases 1 to 2770)
  AUTHORS   Yoshikawa,T., Piao,Y., Zhong,J., Matoba,R., Carter,M.G., Wang,Y.,
            Goldberg,I. and Ko,M.S.
  TITLE     High-throughput screen for genes predominantly expressed in the ICM
            of mouse blastocysts by whole mount in situ hybridization
  JOURNAL   Gene Expr Patterns 6 (2), 213-224 (2006)
   PUBMED   16325481
REFERENCE   4  (bases 1 to 2770)
  AUTHORS   Kim,S.S., Chen,Y.M., O'Leary,E., Witzgall,R., Vidal,M. and
            Bonventre,J.V.
  TITLE     A novel member of the RING finger family, KRIP-1, associates with
            the KRAB-A transcriptional repressor domain of zinc finger proteins
  JOURNAL   Proc Natl Acad Sci U S A 93 (26), 15299-15304 (1996)
   PUBMED   8986806
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK033122.1 and AL731831.17.
            
            Transcript Variant: This variant (2) differs in the 5' UTR compared
            to variant 1. Variants 1, 2, and 3 all encode the same isoform (a).
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR1660821.27537.1,
                                           SRR1660821.58233.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164135, SAMN01164139
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-961               AK033122.1         3-963
            962-962             AL731831.17        75234-75234
            963-2765            AK033122.1         965-2767
            2766-2770           AL731831.17        77038-77042
FEATURES             Location/Qualifiers
     source          1..2770
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 62.05 cM"
     gene            1..2770
                     /gene="Zfp661"
                     /gene_synonym="2810405K07Rik; A1-5; Znf2"
                     /note="zinc finger protein 661"
                     /db_xref="GeneID:72180"
                     /db_xref="MGI:MGI:1919430"
     exon            1..48
                     /gene="Zfp661"
                     /gene_synonym="2810405K07Rik; A1-5; Znf2"
                     /inference="alignment:Splign:2.1.0"
     exon            49..119
                     /gene="Zfp661"
                     /gene_synonym="2810405K07Rik; A1-5; Znf2"
                     /inference="alignment:Splign:2.1.0"
     CDS             87..1370
                     /gene="Zfp661"
                     /gene_synonym="2810405K07Rik; A1-5; Znf2"
                     /note="isoform a is encoded by transcript variant 2; zinc
                     finger protein 2 (A1-5); zfp-661"
                     /codon_start=1
                     /product="zinc finger protein 2 isoform a"
                     /protein_id="NP_001104499.1"
                     /db_xref="CCDS:CCDS16705.1"
                     /db_xref="GeneID:72180"
                     /db_xref="MGI:MGI:1919430"
                     /translation="MAAVSPPTRCQALVTFEDVAVTFTDDEWKRLVPVQRALYKAVML
                     ENYESIISLGLPVPRPDVILQFKRRGEPWIRGFHGSEEKTWPESVSLDLETKPETLDA
                     SRGTLREIHRKQSSLCPKREIQTLTGGPEPEKESPKARTCKKPLSLDKGLHQMSAPSK
                     KALTKHQDQECSECGKTFFDHSSLIRHQRTHTGEKPYDCPECGKAFSHRSSLSRHLMF
                     HTGESPYECDACGKAFFDRSSLTVHQRIHTGEKPFKCNDCGKAFFDRSSLTRHQRIHT
                     GESPYECQQCGKAFSQKSILTRHLLTHTGRKPYECRDCGKAFYGVTSLNRHQKVHTEE
                     PRYQCSECGKAFFDRSSLTQHQKIHTGDKPYECGECGKAFSQRCRLTRHQRVHTGEKP
                     FECSVCGKEFSSKSSIIQHQRRYAKQGIDRGGSMS"
     exon            120..246
                     /gene="Zfp661"
                     /gene_synonym="2810405K07Rik; A1-5; Znf2"
                     /inference="alignment:Splign:2.1.0"
     exon            247..360
                     /gene="Zfp661"
                     /gene_synonym="2810405K07Rik; A1-5; Znf2"
                     /inference="alignment:Splign:2.1.0"
     exon            361..2770
                     /gene="Zfp661"
                     /gene_synonym="2810405K07Rik; A1-5; Znf2"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2751..2756
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zfp661"
                     /gene_synonym="2810405K07Rik; A1-5; Znf2"
                     /note="putative"
     polyA_site      2765
                     /gene="Zfp661"
                     /gene_synonym="2810405K07Rik; A1-5; Znf2"
                     /note="putative"
ORIGIN      
        1 cgacacgagg cggtgagtgt tcgcaggttc ccagtactct tgccaaagga ctcttatcct
       61 tccctaccag agcagcatag gagagaatgg ctgccgtgtc tccgcctacc agatgtcagg
      121 cattggtgac atttgaagat gtggcggtga ctttcacaga tgacgagtgg aagcgtctgg
      181 tacccgtgca gagggctctc tacaaggccg tgatgctaga gaactatgag agcatcatct
      241 ctctgggtct tcctgttcct cgacctgatg tgattcttca gttcaagaga aggggcgagc
      301 cctggattcg gggttttcat ggatctgagg agaaaacatg gccagagagt gtctctctag
      361 acttggaaac taagcctgag accctagatg cttcaagagg cacactgaga gaaatccata
      421 gaaagcaaag ttctctatgc cctaaacgag aaatccaaac actaacaggt gggccggaac
      481 cagagaagga aagtcccaaa gcaaggactt gcaaaaagcc cctttccttg gataaaggct
      541 tgcatcaaat gtcagctcca tccaagaaag ccctcactaa acaccaagac caggaatgta
      601 gtgagtgtgg gaagaccttc tttgaccatt cgtccctcat ccgacaccag aggactcaca
      661 ctggagagaa gccatatgac tgtcccgagt gtgggaaggc cttcagccac aggagcagtc
      721 tcagtagaca tctgatgttc cacaccggag agagtccgta cgagtgtgat gcatgtggca
      781 aggccttctt tgaccgttca tccctaactg tgcatcagcg gattcacaca ggggagaagc
      841 cgtttaaatg caatgactgt ggcaaagcct tcttcgaccg ctcatccctc actcgccacc
      901 agagaatcca taccggagag agtccctacg aatgccagca gtgtgggaaa gccttcagcc
      961 agaaaagcat tctcactcgg cacctgctga cccacactgg caggaagcct tacgaatgca
     1021 gggactgtgg gaaagcattc tatggcgtca cctccctaaa cagacaccaa aaagtgcaca
     1081 ctgaggagcc ccgctatcag tgcagcgagt gtggcaaagc tttctttgac cgctcttctc
     1141 ttacgcagca ccagaagata cacactggag acaagccata tgagtgcggc gagtgtggaa
     1201 aggccttcag ccagaggtgc cggctcacga gacatcagag agttcatacg ggggagaaac
     1261 cctttgagtg cagtgtgtgc ggcaaagagt tcagctctaa gtcctccatt attcagcatc
     1321 agagacgtta cgccaaacaa gggatagaca gagggggaag catgagctag acagcgggcc
     1381 ttcctgcgag cctggaaggg ttccctgtcg tctacaaggc cagcatttgt tctttctgcc
     1441 aactctggcc gctgtcttca gcccaacctc tgctccaggg tccgagtaaa cggtgcacct
     1501 ccttcctgtg ctacagaact aacgtggagt gcagaaacta aaccatgaat ctccacattc
     1561 aaaattctgc acagaggctg cgcatagctc agtgatagac tcccgcctag catgcatgag
     1621 gagctgcagt ttgatcccaa gcactgcgaa aggaagctgg agagatcata ggacagatgt
     1681 taggagagga atctgcagac acagtgagaa taggcctgtt atcactgcac tttaaatatc
     1741 tgcaggctat tacagttgga gaatgtcaca attatgagag agtaccattt tctctagaag
     1801 tttctatagc tcttctggag ctttttggca cctagacctt attctcttgt gcctcagtaa
     1861 agctctccta gactagtagt agtggtagca cttactaagc actgatctta gggtaaagtc
     1921 tcagcagtga attgtaaaag ggctaggttg actgatcctc tcactaaatc tctgaaacgg
     1981 gtccttttac tgtctgaatt tcacagagga gcaccctgaa gtttagagaa attaagtact
     2041 atagtctagg agatgcaagg tgaagccagg tgtcttggtt atttctctat tgctgtgcag
     2101 agacatgatg gccaaggcaa cttagaaagc atttgcaggc cttgcttaca gttccagggg
     2161 gtgagtctct gaacatcatc ataggagcat ggtgacaggc agacccagtg ctggagcaga
     2221 acttaaatct gatccacaag cagtaggcca agagataggg agagacagac agactggtct
     2281 tggcacactg gtctaggcaa gggcttctga aacttcaaag cccaccccca gtgacacacc
     2341 tcttccaaca aagccacacc tcctgatcct ttctaaacat tccatcaatc aggaaccaaa
     2401 cattcaaata agtatatgag cctaaggggg caattctcat tcaaaccacc acattctgct
     2461 cacggacatg atcaacaacc aatcctcaca ctgaaatagg ccttgttgaa gttcacagat
     2521 cagcttactg aaggttagag agattaagta aaatacccta catgacacaa ggagaaatga
     2581 ggtcttcagt atgaatctgc cttcagtatt tctactatag attacactct aaaattttgt
     2641 cttataattg gcatacctga actatcttct tagctagatt gtaagcattt ggaggtgtga
     2701 tttaataggt ctctgtgtct tacagcgtgc cttgcaaata ttaggtgatc aataaatgtt
     2761 tatctaaatg
//
