LOCUS       NM_001310759            2249 bp    mRNA    linear   ROD 13-JUN-2024
DEFINITION  Mus musculus zinc finger protein 653 (Zfp653), transcript variant
            1, mRNA.
ACCESSION   NM_001310759 XM_006510406
VERSION     NM_001310759.2
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2249)
  AUTHORS   Guo,G., Huss,M., Tong,G.Q., Wang,C., Li Sun,L., Clarke,N.D. and
            Robson,P.
  TITLE     Resolution of cell fate decisions revealed by single-cell gene
            expression analysis from zygote to blastocyst
  JOURNAL   Dev Cell 18 (4), 675-685 (2010)
   PUBMED   20412781
REFERENCE   2  (bases 1 to 2249)
  AUTHORS   Yokoyama,S., Ito,Y., Ueno-Kudoh,H., Shimizu,H., Uchibe,K.,
            Albini,S., Mitsuoka,K., Miyaki,S., Kiso,M., Nagai,A., Hikata,T.,
            Osada,T., Fukuda,N., Yamashita,S., Harada,D., Mezzano,V., Kasai,M.,
            Puri,P.L., Hayashizaki,Y., Okado,H., Hashimoto,M. and Asahara,H.
  TITLE     A systems approach reveals that the myogenesis genome network is
            regulated by the transcriptional repressor RP58
  JOURNAL   Dev Cell 17 (6), 836-848 (2009)
   PUBMED   20059953
REFERENCE   3  (bases 1 to 2249)
  AUTHORS   Borud,B., Mellgren,G., Lund,J. and Bakke,M.
  TITLE     Cloning and characterization of a novel zinc finger protein that
            modulates the transcriptional activity of nuclear receptors
  JOURNAL   Mol Endocrinol 17 (11), 2303-2319 (2003)
   PUBMED   12920234
  REMARK    GeneRIF: novel zinc-finger protein that influences gene activation
            through interaction with the functionally important activation
            function-2 domain of nuclear receptors
REFERENCE   4  (bases 1 to 2249)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC163623.5.
            
            On Nov 1, 2022 this sequence version replaced NM_001310759.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AY072705.1, SRR7652917.1155322.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164135, SAMN01164138
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-363               AC163623.5         137191-137553       c
            364-407             AC163623.5         134290-134333       c
            408-623             AC163623.5         131843-132058       c
            624-1235            AC163623.5         123946-124557       c
            1236-1437           AC163623.5         123643-123844       c
            1438-1549           AC163623.5         123429-123540       c
            1550-1664           AC163623.5         122556-122670       c
            1665-1764           AC163623.5         122135-122234       c
            1765-2249           AC163623.5         121551-122035       c
FEATURES             Location/Qualifiers
     source          1..2249
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="9"
                     /map="9 8.18 cM"
     gene            1..2249
                     /gene="Zfp653"
                     /gene_synonym="E430039K05Rik; Zip67; Znf653"
                     /note="zinc finger protein 653"
                     /db_xref="GeneID:319601"
                     /db_xref="MGI:MGI:2442362"
     exon            1..363
                     /gene="Zfp653"
                     /gene_synonym="E430039K05Rik; Zip67; Znf653"
                     /inference="alignment:Splign:2.1.0"
     CDS             71..1942
                     /gene="Zfp653"
                     /gene_synonym="E430039K05Rik; Zip67; Znf653"
                     /note="isoform 1 is encoded by transcript variant 1; zinc
                     finger protein Zip67; 67 kDa zinc finger protein"
                     /codon_start=1
                     /product="zinc finger protein 653 isoform 1"
                     /protein_id="NP_001297688.1"
                     /db_xref="CCDS:CCDS80968.1"
                     /db_xref="GeneID:319601"
                     /db_xref="MGI:MGI:2442362"
                     /translation="MAERAPEPGAEAEAGAGGEAAAEEGAAGRKARGRPRLTESDRAR
                     RRLESRKKYDVRRVYLGEAHGPWVDLRRRSGWSDAKLAAYLISLERGQRSGRHGKPWE
                     QVPKKPKRKKRRRRNVNCLKNVVIWYEDHKHRCPYEPHLAELDPTFGLYTTAVWQCEA
                     GHRYFQDLHSPLKPLSDSEPDSDKVGSGLVAGSSDSSSSGSSSDSEEPPETQPAKASA
                     AAAALTPASPTGSSGLITQEGVHIPFDVHHVESLAEQGTPLCQNPAGSGPEALETVVC
                     VPVPMQVGTGPGTLFENMPQEALGEVVASCPVSGMVPGSQVIIIAGPGYDALTAEGIR
                     LNVAAGGGTPSSSLGEEVPCAMMEGVAAYTQTEPEGTQHSTMDTTSIASIETKKDTTP
                     CHPVEKEDLYMLKEEKEDSVAPELAELAATVPENAEAEAEVDGEELDSSEMSAIIYEI
                     PKEPEKRRRSKRSRVMDADGLLEMFHCPYEGCSQVYVALSSFQNHVNLVHRKGKTKVC
                     PHPGCGKKFYLSNHLRRHMIIHSGVREFTCETCGKSFKRKNHLEVHRRTHTGETPLQC
                     EICGYQCRQRASLNWHMKKHTAEVQYNFTCDRCGKRFEKLDSVKFHTLKSHPDHKPT"
     exon            364..407
                     /gene="Zfp653"
                     /gene_synonym="E430039K05Rik; Zip67; Znf653"
                     /inference="alignment:Splign:2.1.0"
     exon            408..623
                     /gene="Zfp653"
                     /gene_synonym="E430039K05Rik; Zip67; Znf653"
                     /inference="alignment:Splign:2.1.0"
     exon            624..1235
                     /gene="Zfp653"
                     /gene_synonym="E430039K05Rik; Zip67; Znf653"
                     /inference="alignment:Splign:2.1.0"
     exon            1236..1437
                     /gene="Zfp653"
                     /gene_synonym="E430039K05Rik; Zip67; Znf653"
                     /inference="alignment:Splign:2.1.0"
     exon            1438..1549
                     /gene="Zfp653"
                     /gene_synonym="E430039K05Rik; Zip67; Znf653"
                     /inference="alignment:Splign:2.1.0"
     exon            1550..1664
                     /gene="Zfp653"
                     /gene_synonym="E430039K05Rik; Zip67; Znf653"
                     /inference="alignment:Splign:2.1.0"
     exon            1665..1764
                     /gene="Zfp653"
                     /gene_synonym="E430039K05Rik; Zip67; Znf653"
                     /inference="alignment:Splign:2.1.0"
     exon            1765..2249
                     /gene="Zfp653"
                     /gene_synonym="E430039K05Rik; Zip67; Znf653"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2172..2177
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zfp653"
                     /gene_synonym="E430039K05Rik; Zip67; Znf653"
                     /note="hexamer: ATTAAA"
     polyA_site      2198
                     /gene="Zfp653"
                     /gene_synonym="E430039K05Rik; Zip67; Znf653"
                     /note="major polyA site"
     polyA_site      2249
                     /gene="Zfp653"
                     /gene_synonym="E430039K05Rik; Zip67; Znf653"
ORIGIN      
        1 gcagactagg cgcgccactt ccggtcgagg ctcctaacaa cgggggaggc cggtaaccag
       61 ggaggggggg atggcggagc gggctccaga gcccggggcg gaggcggagg cgggcgcagg
      121 cggggaggcg gcggcagagg aaggcgcggc aggcagaaag gcgcggggcc ggccgcggct
      181 caccgagtcg gaccgggccc ggaggcggct cgagtcccgg aagaagtacg acgtgcggcg
      241 cgtgtacctg ggcgaggcgc acggcccctg ggtggacctg agacgccgca gcggctggag
      301 cgacgccaaa cttgccgcct acctcatttc gctggagcgt ggccagcgta gcggtcgcca
      361 cgggaagcct tgggagcaag tccccaaaaa gccaaagcgg aagaaaaggc ggcggcgcaa
      421 tgtgaactgc ctgaagaacg tggtcatctg gtatgaggac cacaaacacc gctgcccgta
      481 tgagccacac ctggctgagc ttgacccaac ctttggcctt tacacaacgg ctgtgtggca
      541 gtgcgaggct ggacaccgct acttccagga tctacactcc ccgctcaagc ccctcagtga
      601 ctcagagcct gacagtgaca aagtgggcag tggcctggtg gctggcagct ctgactcatc
      661 cagctcgggc tccagctctg actcggagga gcctcctgag acccagccag ccaaagcctc
      721 agctgctgct gcagctctca cccctgccag ccccacgggc agcagtgggc ttatcactca
      781 ggaaggagtt catatcccct ttgacgtcca ccatgtggag agcctggctg agcagggcac
      841 ccctctgtgc caaaaccctg caggcagcgg gcctgaggcc ctggagacgg tggtgtgtgt
      901 gccagttccc atgcaagtgg gcactggccc cggcaccctc tttgagaaca tgccccagga
      961 ggcactgggt gaggtggtgg ccagctgccc ggtgtcaggc atggtgcccg gctcccaggt
     1021 gatcatcatt gctggtcctg gctatgacgc tctcacagcc gagggcatcc gcctcaatgt
     1081 agctgctggc ggcggcactc ccagcagcag cctgggtgag gaggtgccct gtgccatgat
     1141 ggagggtgtg gcagcctaca cacagacgga gcccgagggc actcagcaca gcaccatgga
     1201 taccacctct atagccagca ttgagaccaa gaaagacacc accccgtgtc accccgtaga
     1261 gaaggaggac ctgtatatgc tcaaggagga gaaagaggat tcagtggccc cagagctggc
     1321 agagctggca gccacggtgc ctgagaatgc agaggcagag gcagaagtgg atggagaaga
     1381 attggacagc agtgaaatgt cagccatcat ctatgagatt cccaaggagc ccgagaagag
     1441 acggcggagc aagcggtcac gtgtgatgga tgctgatggc ctgctggaga tgttccactg
     1501 tccatacgag ggctgcagcc aggtgtatgt ggctctcagc agcttccaga accacgtcaa
     1561 ccttgtgcac cgaaaaggga agaccaaagt gtgtcctcac cctggctgtg gcaagaagtt
     1621 ttatttatcc aaccacctgc gacgccacat gatcatccat tcaggcgtcc gcgagttcac
     1681 ctgtgagacc tgcggcaagt ctttcaagag gaagaaccat ctggaggtgc accggcgcac
     1741 gcacactggg gagacgcccc tgcagtgcga gatatgcggg taccagtgtc ggcagcgtgc
     1801 ttcgctcaat tggcacatga agaagcacac agccgaggtg cagtacaact tcacgtgcga
     1861 tcgctgcggg aagcgcttcg agaagctgga cagtgtcaag ttccacacgc tcaaaagcca
     1921 cccggaccac aaacctacct gacgtgccca tgcccatgga cctcagcctc tatttatttg
     1981 tactcttgga cattatgtcc agacgatcag agccctagat agccagccac aggggctgcc
     2041 ccaaccgcag gccggaagga ggcattccca ctcttccctg ggcaggtgcc ccaccctgcc
     2101 ccatcacatc ccacccatgg agctggcaca tgggattgca ctgctgaact gtgtcaagag
     2161 cacagaatga gattaaagtg aaaaaagagt tgcccttccc ctaagcctgg ataattgtgg
     2221 gcactgggca tccctttgtg accaattaa
//
