LOCUS       NM_001416089            2856 bp    mRNA    linear   ROD 14-JUN-2024
DEFINITION  Mus musculus zinc finger protein 647 (Zfp647), transcript variant
            9, mRNA.
ACCESSION   NM_001416089
VERSION     NM_001416089.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2856)
  AUTHORS   Memic,F., Knoflach,V., Morarach,K., Sadler,R., Laranjeira,C.,
            Hjerling-Leffler,J., Sundstrom,E., Pachnis,V. and Marklund,U.
  TITLE     Transcription and Signaling Regulators in Developing Neuronal
            Subtypes of Mouse and Human Enteric Nervous System
  JOURNAL   Gastroenterology 154 (3), 624-636 (2018)
   PUBMED   29031500
REFERENCE   2  (bases 1 to 2856)
  AUTHORS   Yokoyama,S., Ito,Y., Ueno-Kudoh,H., Shimizu,H., Uchibe,K.,
            Albini,S., Mitsuoka,K., Miyaki,S., Kiso,M., Nagai,A., Hikata,T.,
            Osada,T., Fukuda,N., Yamashita,S., Harada,D., Mezzano,V., Kasai,M.,
            Puri,P.L., Hayashizaki,Y., Okado,H., Hashimoto,M. and Asahara,H.
  TITLE     A systems approach reveals that the myogenesis genome network is
            regulated by the transcriptional repressor RP58
  JOURNAL   Dev Cell 17 (6), 836-848 (2009)
   PUBMED   20059953
REFERENCE   3  (bases 1 to 2856)
  AUTHORS   Briers,S., Crawford,C., Bickmore,W.A. and Sutherland,H.G.
  TITLE     KRAB zinc-finger proteins localise to novel KAP1-containing foci
            that are adjacent to PML nuclear bodies
  JOURNAL   J Cell Sci 122 (Pt 7), 937-946 (2009)
   PUBMED   19258395
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC157554.7.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR13948564.1123845.1,
                                           SRR7345562.2714869.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164139, SAMN01164141
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-50                AC157554.7         111575-111624
            51-716              AC157554.7         115486-116151
            717-809             AC157554.7         118939-119031
            810-936             AC157554.7         119239-119365
            937-1050            AC157554.7         119597-119710
            1051-2856           AC157554.7         124825-126630
FEATURES             Location/Qualifiers
     source          1..2856
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="15"
                     /map="15 36.28 cM"
     gene            1..2856
                     /gene="Zfp647"
                     /gene_synonym="6030449J21; Es492; Znf250"
                     /note="zinc finger protein 647"
                     /db_xref="GeneID:239546"
                     /db_xref="MGI:MGI:3052806"
     exon            1..50
                     /gene="Zfp647"
                     /gene_synonym="6030449J21; Es492; Znf250"
                     /inference="alignment:Splign:2.1.0"
     exon            51..716
                     /gene="Zfp647"
                     /gene_synonym="6030449J21; Es492; Znf250"
                     /inference="alignment:Splign:2.1.0"
     exon            717..809
                     /gene="Zfp647"
                     /gene_synonym="6030449J21; Es492; Znf250"
                     /inference="alignment:Splign:2.1.0"
     CDS             768..2375
                     /gene="Zfp647"
                     /gene_synonym="6030449J21; Es492; Znf250"
                     /note="KRAB zinc-finger protein"
                     /codon_start=1
                     /product="zinc finger protein 250"
                     /protein_id="NP_001403018.1"
                     /db_xref="GeneID:239546"
                     /db_xref="MGI:MGI:3052806"
                     /translation="MAAAGLLPLPAAPQAKVTFEDVAVLLSQEEWARLGPAQRGLYRH
                     VMMETYGNVVSLGLPGSKPVVISQLERGEDPWVLDGQGTELSQSLGSDHSECKAKEEN
                     QNTDLNVPPLISDEASATLTETPLRKVAEERYKTEPKVCPSPKPIGPQNAHGLNPSVP
                     VARPQTAPSVERPYICIECGKCFGRSSHLLQHQRIHTGEKPYVCHVCGKAFSQSSVLS
                     KHRRIHTGEKPYECNECGKAFRVSSDLAQHHKIHTGEKPHECLECGKAFTQLSHLIQH
                     QRIHTGERPYVCPLCGKAFNHSTVLRSHQRVHTGEKPHGCSECGKTFSVKRTLLQHQR
                     VHTGEKPYTCSECGKAFSDRSVLIQHHNVHTGEKPYECSECGKTFSHRSTLMNHERIH
                     TQEKPYACYECGKAFVQHSHLIQHQRVHTGEKPYVCGECGHAFSARRSLIQHERIHTG
                     EKPFQCTECGKAFSLKATLIVHLRTHTGEKPYECNSCGKAFSQYSVLIQHQRIHTGEK
                     PYECGECGRAFNQHGHLIQHQKVHKKL"
     exon            810..936
                     /gene="Zfp647"
                     /gene_synonym="6030449J21; Es492; Znf250"
                     /inference="alignment:Splign:2.1.0"
     exon            937..1050
                     /gene="Zfp647"
                     /gene_synonym="6030449J21; Es492; Znf250"
                     /inference="alignment:Splign:2.1.0"
     exon            1051..2856
                     /gene="Zfp647"
                     /gene_synonym="6030449J21; Es492; Znf250"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2827..2832
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zfp647"
                     /gene_synonym="6030449J21; Es492; Znf250"
                     /note="hexamer: ATTAAA"
     polyA_site      2856
                     /gene="Zfp647"
                     /gene_synonym="6030449J21; Es492; Znf250"
                     /note="major polyA site"
ORIGIN      
        1 gtcttaggga gccgaagctg ccgccacagg gcgagaggtt gcggcagatg gtggtctttc
       61 atacatgagg aactatatta aagggttgct gccctaggga gattgagaac cacagctctc
      121 aacaaacatg caagatattt aggatgattg gcttctgatt tcgcttacag aatgaaagca
      181 tagaagcaag cctcagttct ctggaggtca cagaagttgc aatagccaag agccaacagc
      241 ttctaggtca gccctaagag cctggagccc tgtcagaggc cagaacgtgg cttctctgta
      301 ttctcgtcac tagaccccgc ccaggcgtag tcggctgtgt gctgactacc tgtcactctg
      361 acaggcctcc aggagccaga gctgctcatt agtgaaggtc catctctcaa gcacctgagg
      421 atggaaatgt cacccaagtg aatgacgagg tgagtgacga aggcctcact gagggagagg
      481 agtgcccatg gactgcctgc catagaccat caccaagcac tgacattgga tttcgcagtg
      541 tggagagcaa aggaattcct gtcaaggatt gctccagggt ccagtggagg tgacatcctg
      601 tgaacacatc tcctagaaag cagaaggggt gaagaccaca tggggtgaat ctgcttccat
      661 ggaaaagggt gactgaggaa ccaaaaaggc tgacctagca gctgcagagg actgggcccc
      721 acaggatcgc ctgatttctg ttgtcctcgc agtcttgaga taccaagatg gcagcagccg
      781 ggcttctacc gctgccagca gcaccacagg ccaaagtgac ctttgaggat gtggctgttc
      841 tgctgtctca ggaggagtgg gcccgcctgg gccctgctca gcggggcctc taccgacacg
      901 tcatgatgga gacctacggg aatgtagtct cactgggact tccaggatct aagcctgttg
      961 tgatctccca gctggagcga ggagaagacc cgtgggtcct ggatggacag ggaaccgagc
     1021 tgagccagag cctgggaagt gaccactcag aatgcaaagc caaggaagag aaccaaaaca
     1081 cagacttgaa tgtgccacca ttaatctcag acgaagcatc agcgacgctg acggaaacac
     1141 cgctgaggaa ggttgctgaa gaacgttaca aaacagaacc gaaggtctgc cccagtccaa
     1201 agcccattgg cccccagaat gcccacgggt tgaaccctag tgtacccgtt gcccgacccc
     1261 agacggctcc cagtgttgag agaccctata tctgcattga gtgtggaaag tgctttggtc
     1321 ggagctccca tctccttcag catcagcgaa tacacactgg cgagaagccc tacgtatgcc
     1381 atgtatgcgg aaaggctttc agccagagtt ccgtcctgag caagcacagg cggatccaca
     1441 cgggcgagaa gccctacgag tgtaacgaat gtgggaaagc ctttcgcgtg agttccgacc
     1501 ttgcccagca ccacaagatc cacaccggag agaagcctca cgagtgtctg gaatgtggga
     1561 aggcgttcac ccagctctcc cacctcatcc aacatcagcg gatccacacg ggggagcggc
     1621 cctacgtgtg tcccttgtgt gggaaagcct tcaaccacag caccgtcctg cggagccacc
     1681 agagggtgca cactggggag aagcctcacg ggtgcagcga gtgtgggaag accttcagcg
     1741 tgaagaggac gctgctgcag caccagcggg tgcacaccgg ggagaagccc tacacgtgca
     1801 gcgagtgcgg gaaggccttc agcgaccgct ccgtgctcat ccaacatcac aacgtacaca
     1861 ctggggagaa gccgtacgag tgcagcgagt gcggcaagac ctttagccac cgctccaccc
     1921 tgatgaatca cgagaggatt cacacgcagg agaagcccta cgcgtgctac gagtgcggga
     1981 aggcctttgt ccagcactcg catctcatcc agcatcagag agtccacacg ggagagaaac
     2041 cctacgtgtg tggcgagtgt ggccatgctt tcagcgcacg ccggtccctg atccagcatg
     2101 agcgaatcca cacaggcgag aaaccctttc agtgcacaga gtgtggcaaa gccttcagcc
     2161 tgaaagcaac tctgatcgtg cacctgagga cccacacggg cgagaaaccc tatgagtgca
     2221 atagctgcgg caaggcgttc agccagtact cggtgctcat ccaacaccag aggatccaca
     2281 ccggagagaa accctatgag tgtggcgagt gcggacgggc cttcaaccag cacggccacc
     2341 tgatccaaca tcagaaagta cacaagaagc tgtgacccat ggctgtcaga agcccgcact
     2401 tagaacatgc acaagaccta aacagccttc ctccaggagg gagttctgtt ccatgtgcag
     2461 aatcgtcgtt cccttgggga ctctgttaca gtcccatgtc cctcctgggg agaaacattc
     2521 agcatgtgtt aaatttattt tcctcaacat cttggaagtt aaactggaga gtaatcctac
     2581 aactgtagat actggtaaag acagccataa ttctaccttt gtctatttga catgaattag
     2641 tttattgaag caactgaaaa gctataaagc ttagggacta ttcacatttc aaatgaagtt
     2701 ccttttacac agcttcatga cgttcctaaa tgtatctgat cattctaata ttgtgcttaa
     2761 atttagaatg ttggaccatt ttcggtatcc ttttaaaaca cttaagtgct atgttgataa
     2821 agtaatatta aaaaaaaaaa aagatcttgg gccaga
//
