LOCUS       NM_026856               5700 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus zinc finger protein 644 (Zfp644), transcript variant
            2, mRNA.
ACCESSION   NM_026856 XM_358356
VERSION     NM_026856.2
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 5700)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 5700)
  AUTHORS   Guo,G., Huss,M., Tong,G.Q., Wang,C., Li Sun,L., Clarke,N.D. and
            Robson,P.
  TITLE     Resolution of cell fate decisions revealed by single-cell gene
            expression analysis from zygote to blastocyst
  JOURNAL   Dev Cell 18 (4), 675-685 (2010)
   PUBMED   20412781
REFERENCE   3  (bases 1 to 5700)
  AUTHORS   Okazaki,N., Kikuno,R., Ohara,R., Inamoto,S., Aizawa,H., Yuasa,S.,
            Nakajima,D., Nagase,T., Ohara,O. and Koga,H.
  TITLE     Prediction of the coding sequences of mouse homologues of KIAA
            gene: II. The complete nucleotide sequences of 400 mouse
            KIAA-homologous cDNAs identified by screening of terminal sequences
            of cDNA clones randomly sampled from size-fractionated libraries
  JOURNAL   DNA Res 10 (1), 35-48 (2003)
   PUBMED   12693553
REFERENCE   4  (bases 1 to 5700)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BB663850.1, BC057405.1 and AK122471.1.
            
            On or before Sep 16, 2004 this sequence version replaced
            XM_358356.2, NM_026856.1.
            
            Transcript Variant: This variant (2) differs in the 5' UTR compared
            to variant 1. Variants 1-5 all encode the same isoform (a).
            
            ##Evidence-Data-START##
            CDS exon combination :: BC057405.1, SRR1660815.40640.1
                                    [ECO:0000331]
            RNAseq introns       :: single sample supports all introns
                                    SAMN01164139, SAMN01164142 [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-344               BB663850.1         2-345
            345-2441            BC057405.1         224-2320
            2442-2541           AK122471.1         1922-2021
            2542-5700           BC057405.1         2420-5578
FEATURES             Location/Qualifiers
     source          1..5700
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 51.43 cM"
     gene            1..5700
                     /gene="Zfp644"
                     /gene_synonym="1110068L01Rik; BM-005; D5Ertd689e; Zep-2"
                     /note="zinc finger protein 644"
                     /db_xref="GeneID:52397"
                     /db_xref="MGI:MGI:1277212"
     exon            1..299
                     /gene="Zfp644"
                     /gene_synonym="1110068L01Rik; BM-005; D5Ertd689e; Zep-2"
                     /inference="alignment:Splign:2.1.0"
     exon            300..360
                     /gene="Zfp644"
                     /gene_synonym="1110068L01Rik; BM-005; D5Ertd689e; Zep-2"
                     /inference="alignment:Splign:2.1.0"
     CDS             317..4195
                     /gene="Zfp644"
                     /gene_synonym="1110068L01Rik; BM-005; D5Ertd689e; Zep-2"
                     /note="isoform a is encoded by transcript variant 2; zinc
                     finger motif enhancer binding protein 2"
                     /codon_start=1
                     /product="zinc finger protein 644 isoform a"
                     /protein_id="NP_081132.2"
                     /db_xref="CCDS:CCDS39196.1"
                     /db_xref="GeneID:52397"
                     /db_xref="MGI:MGI:1277212"
                     /translation="MRLFLHQDVNKPKFRLKVLNDLANNMDDLKINTDITGAKEELQD
                     DNNFISEKDSGVHKPKDCQTSFQKNSSLTRSEELSEDQSEQALSGGQSALFLPASTPA
                     VPTENFPLPTGAVVNGPVSCSSSTKTSNMNEGSVSLTPGQPADQLAAESCSTLKAAAD
                     HQLSTPQKASQHQVLFLLSDVAHAKNPTHSIKKVPTSALVGCDVQNSVGNNMKSESTL
                     LSQAEVGQGDASTVVRDDCVSALAVISSGTDEFRSENDTNWDPQKEFIQFLMTSEETV
                     DKPPAHSKVVGLEKKRKRKMDVSKITRYTEDCYSDSGRAPGKSKILQVDFLGQNEEMQ
                     AIDSQNYTLSKVKPESAGGDLESVDTFQHLVYNSDKCGEDNSPVHTRTLISNTLKKKC
                     EESDPESPVAFSTEEPSFYPCTKCNVNFREKKHLHRHMMYHLDGNSHFRHLNVPRPYA
                     CRECGRTFRDRNSLLKHMIIHQERRQKLMEEIRELKELQDEGRSARLQCPQCVFGTNC
                     PKTFVQHAKTHEKDKRYYCCEECNFMAVTENELECHRGIAHGAAVKCPVVSSEVTQRK
                     TQKKTSVKDSVIGSSKKPATYLCKMCPFTTSARSILKKHTEYLHSSACVDSFGNPLGL
                     DKRKNDSLEESVDVDSTKSLAKQQPSTFPKNSALKQDAKRTFGSSSQSSNFSKFHKRP
                     HRIQKARKSIAQSGVNSCSQNKSPHKNVMVKSSTDQQPKYFHQAPREKPNARADSSYL
                     YRHKYNNYRTIRKSDPHNADTKRPENEKDHKRVAVKRVAKASKKESSAGEDLDSYPDF
                     LHKMTVVVLQKLHSDKKDSYETEDDSSWDNVELGDYTTQAMEEEAYSDLSQEHVNLLP
                     LFKSKIEGQGPGDSAALSYDQNDGFYFEYYEDGGTNSFLQDIHDPQHLENPETPLSKH
                     SSVFHWTDLSLEKKSCPYCPATFETGVGLSNHVRGHLHRAGLSYEARHVVSPEQIATS
                     DKMQHFKRTGNGTPVKRVRKAIEKSETTSEHTCQLCGGWFDTKIGLSNHVRGHLKRLG
                     KTKWDAHKSPICVLNEMMQNEEKYEKILKALNSRRIIPRPFVAQKLSSGDDFLSHNVL
                     PLDEYHNGLKTEALSVSASEEEGLHFLSECGERKPELPSGRKNQSLTLIELLKSRRLG
                     EERNSAVSPHKTHNQTARKRFVQKCVLPLNEDSPLIYQPQKMDLTVHSAIDCKQKKSR
                     SRSGSKKKMLTLPHGADEVYILRCRFCGLVFRGPLSVQEDWIKHLQRHIVNANLPRTG
                     AGMVEVTSLLKKPASITETSFSLLMAEAAS"
     exon            361..2579
                     /gene="Zfp644"
                     /gene_synonym="1110068L01Rik; BM-005; D5Ertd689e; Zep-2"
                     /inference="alignment:Splign:2.1.0"
     exon            2580..3293
                     /gene="Zfp644"
                     /gene_synonym="1110068L01Rik; BM-005; D5Ertd689e; Zep-2"
                     /inference="alignment:Splign:2.1.0"
     exon            3294..3899
                     /gene="Zfp644"
                     /gene_synonym="1110068L01Rik; BM-005; D5Ertd689e; Zep-2"
                     /inference="alignment:Splign:2.1.0"
     exon            3900..4002
                     /gene="Zfp644"
                     /gene_synonym="1110068L01Rik; BM-005; D5Ertd689e; Zep-2"
                     /inference="alignment:Splign:2.1.0"
     exon            4003..5690
                     /gene="Zfp644"
                     /gene_synonym="1110068L01Rik; BM-005; D5Ertd689e; Zep-2"
                     /inference="alignment:Splign:2.1.0"
     regulatory      5336..5341
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zfp644"
                     /gene_synonym="1110068L01Rik; BM-005; D5Ertd689e; Zep-2"
                     /note="hexamer: AATAAA"
     polyA_site      5359
                     /gene="Zfp644"
                     /gene_synonym="1110068L01Rik; BM-005; D5Ertd689e; Zep-2"
                     /note="major polyA site"
     regulatory      5669..5674
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zfp644"
                     /gene_synonym="1110068L01Rik; BM-005; D5Ertd689e; Zep-2"
                     /note="hexamer: AATAAA"
     polyA_site      5690
                     /gene="Zfp644"
                     /gene_synonym="1110068L01Rik; BM-005; D5Ertd689e; Zep-2"
                     /note="major polyA site"
ORIGIN      
        1 gtttggtttt ggcacgggag agcagcggtg cagcgttgct gccgcccccc gtgggtctga
       61 ttggcacggg agctccggcg gcccgagagc acgggcgcgc ctcgctggct tcccccggcg
      121 gccggcggcc aggcagaggc gggaaagccg cgcgcctgcg ccgtgggaac cgaggccgga
      181 ggcgagaagc ggggagcgga gggggccgtt ggagccgagt agcgtacaga gcggcgtgtg
      241 acgcggggac gccgcgcgct cccaacgtcg ccccggtttg acgcacacgg caccaaactg
      301 cttgatttaa atttggatga gattattctt gcatcaagat gttaataagc caaaatttag
      361 actaaaggtg ttaaatgatc ttgccaacaa tatggatgat ttgaagataa acaccgacat
      421 tactggtgct aaagaagaac tccaagatga caacaatttt atctctgaga aagacagtgg
      481 agttcataaa ccaaaagatt gtcagacatc atttcagaaa aacagttcat tgactcgatc
      541 tgaggaattg tcagaggatc aatcagaaca agccttaagt ggaggccagt ctgctttgtt
      601 tctccctgcc agcactcctg ctgttcctac tgaaaacttt cccttgccca caggagctgt
      661 tgttaatgga ccagtctcat gctcctcctc cacaaagact tccaatatga atgaaggtag
      721 tgtttcatta acccctggac agcctgcaga tcagctagca gcagagtctt gctccacttt
      781 gaaggcagca gctgatcatc agctgtctac accacaaaaa gcaagtcaac accaagttct
      841 gtttttgtta tcagatgtag cacatgctaa gaatccaacc cattccatta aaaaagtacc
      901 tacctctgct ttagttggtt gtgatgttca gaattcagta gggaataaca tgaagtcaga
      961 gagcacttta ctaagtcaag cagaggtggg tcagggcgac gcctccacag tggtcagaga
     1021 cgactgtgtc agcgcgttag cagtgatttc ctcaggtaca gacgaattta ggtcagaaaa
     1081 tgatacaaac tgggatcccc aaaaagagtt cattcagttt cttatgacta gtgaagagac
     1141 ggtggataag cccccagctc attctaaagt agtaggtcta gaaaaaaaga gaaagagaaa
     1201 aatggatgtg agcaagatca ctcgctacac agaggactgc tacagtgact caggccgtgc
     1261 acctggaaaa tcaaaaattc ttcaggttga ctttctaggg caaaacgagg agatgcaagc
     1321 aatagactca cagaactaca cattatcaaa agtgaaaccc gagtcagctg gtggagactt
     1381 ggagtctgtg gacacttttc agcatctagt ttataactca gataaatgtg gagaggataa
     1441 ttcacctgtt catactcgca ctttaatttc aaatacctta aaaaagaaat gtgaagagag
     1501 tgatcctgag tcacctgttg ctttcagtac tgaagagcca tcattctacc cctgtacaaa
     1561 gtgcaatgtg aattttaggg agaaaaagca tctccacagg catatgatgt atcatttaga
     1621 tgggaatagt cactttcgcc accttaatgt ccccaggcca tatgcttgta gagaatgtgg
     1681 acggacattt cgagatcgta attcactact aaagcatatg atcattcacc aagaaagacg
     1741 gcagaagctg atggaagaga ttcgtgagct gaaagagctc caggatgaag gcagaagtgc
     1801 tcgactccag tgccctcagt gtgtgtttgg taccaattgc cctaagacgt ttgtgcaaca
     1861 tgcaaaaacc catgagaaag acaaacggta ctactgctgt gaggagtgta acttcatggc
     1921 agtgacggag aatgagctgg aatgccatag gggcatcgcc cacggagcag cagtgaagtg
     1981 tcctgttgtg agttcagaag taactcagag aaaaacacaa aagaagactt cagtgaaaga
     2041 ctctgttata ggatcatcca aaaaacctgc tacttaccta tgtaagatgt gtcccttcac
     2101 tacttcagcc agaagtattc tgaagaagca cacggagtat ttgcattcct cggcgtgtgt
     2161 tgactccttt ggtaatccac tgggacttga caaaagaaaa aatgacagcc tcgaggagtc
     2221 tgtagatgtc gatagcacca agtcattagc taagcagcag ccaagtacat ttccaaagaa
     2281 ctctgcttta aaacaggatg ctaaacggac atttggatca agctcacagt caagtaattt
     2341 ttcaaaattt cataagcggc cacatagaat acaaaaagcc cggaaaagca ttgcccaatc
     2401 tggtgtaaat tcgtgcagtc aaaacaagtc tcctcacaag aacgttatgg ttaagagcag
     2461 cactgaccaa caaccaaagt atttccatca ggccccaaga gaaaaaccta acgccagggc
     2521 agacagcagt tatttatata gacacaagta taacaactac cggacgatca gaaaatcaga
     2581 ccctcataat gcagacacca aaaggccaga aaacgagaaa gaccacaagc gtgtagctgt
     2641 gaaaagagta gctaaggcct caaagaagga aagctctgct ggagaggact tggatagcta
     2701 tcccgacttt ctgcataaaa tgactgttgt tgttttgcaa aagcttcatt ctgataagaa
     2761 agatagttac gaaacagaag atgacagctc ctgggataac gttgagttag gtgactacac
     2821 tacacaggcc atggaagaag aagcctacag tgaccttagt caagaacatg taaacttatt
     2881 gcccctgttt aaaagcaaga tagagggcca gggccctgga gacagtgctg ccctgagtta
     2941 cgatcagaat gatggcttct actttgaata ttatgaagac ggtggcacta acagcttttt
     3001 acaggatata catgatcctc agcatttgga aaacccagaa acgcctttgt caaagcatag
     3061 ttctgttttt cattggactg atttgtctct tgagaagaag tcatgtcctt attgcccagc
     3121 aacatttgaa acaggtgttg ggttgtcaaa tcatgtccga ggacatcttc acagagcagg
     3181 attgagctat gaagcccgtc atgttgtatc accagaacaa atagccacaa gtgacaagat
     3241 gcagcacttc aaaagaactg gcaacgggac gcctgtgaaa cgagttagaa aagctataga
     3301 gaagtctgaa actacttccg aacatacttg tcagctctgt ggtggttggt ttgacacaaa
     3361 gattgggtta tcaaatcatg tcagaggcca tctgaaaaga cttgggaaaa ctaaatggga
     3421 tgctcacaaa tctccaatct gtgttctgaa tgagatgatg caaaacgaag agaagtatga
     3481 aaagatcctg aaggcgctca acagtcgccg cattatcccc agaccgtttg tagctcagaa
     3541 actctcctca ggcgatgact tcctatctca caatgtctta cctcttgatg aataccacaa
     3601 tggcctaaag acagaggctc tctcagtgtc tgcatcagag gaagaagggc tgcatttctt
     3661 aagtgagtgt ggtgaaagaa agcctgaact gcccagtggg agaaagaacc agtctcttac
     3721 actgatagaa cttcttaaaa gtagaaggct aggcgaagaa aggaattctg cagtctctcc
     3781 tcacaagacc cataaccaga cagcaagaaa gagatttgtt cagaaatgtg ttcttccatt
     3841 aaacgaagac agtccgttga tctatcagcc acaaaaaatg gacttgactg tgcactcagc
     3901 catagattgt aagcagaaga aatcaaggtc aagatctgga agcaagaaga aaatgctaac
     3961 gttgcctcat ggtgctgacg aggtttacat tctccgatgc aggttttgtg gcctagtctt
     4021 tcggggacca ttgtctgttc aggaagactg gattaagcac ttacagcgtc acattgtaaa
     4081 cgctaatctt ccacggactg gagctggcat ggtggaagtc acatcactac ttaaaaagcc
     4141 tgcctctatc acagaaacgt cgttttcttt actaatggca gaagcagcat catagaacca
     4201 ggaatccttt tcaatagcaa atttaattgg atgtaaattt aaaatttgtg tctttttttt
     4261 gtaagccaca tgaaagtatc cattataaat actaaagtag gaagaatgag ggaccgtaaa
     4321 ttagagtggc atcggagcaa acaatacttc agacaagaca gtaagtagtc atatatttta
     4381 tatagggtgg agatgtgttc ttaaggttta ctaagttttg ttggctgagt ttactcaact
     4441 aaaggtccta catctgagag ccatttgtaa agtgttgcac atgaatcctt acagacagac
     4501 ttactgaaag attatgttct ctacagtgtt accagaatca aggctctggt ttttccccac
     4561 acatagaaaa ataagaaatt atattttgtt ggtatgtatt tagtgttttg tataatacca
     4621 ggaactgcta actaaattta ctcaacttag ggcattaaat atcatgtact tcatagtttg
     4681 agactgttcc ctcaaatagg gcagagtact attctatcta gatgtgttaa gtgttttttt
     4741 aaaatcataa tggaacggtt tttttttata tatatataca tatatatata tatatactaa
     4801 aaagttggag cgagatttgt ttaaacaagt atttctaaaa gaaatattgt acatagtcct
     4861 ggaaattatt tgtggtaagg aaatattctt taatccagtt gcatttctca gacaatgaag
     4921 tggtgcgtcc atgctacctc ctgctttgtc aacaaagatg ctatttaccc tttccatttg
     4981 tatcataata gattttaaaa atctaatgtt ctttattgca agacatactt ttgttaacag
     5041 atttgtttct ttgtaacgtt ttccatacgt ttgacatgct tacaggacag ggttgtcttt
     5101 atttaacatt gtagaaatgt aattaataaa caaggctcac tacacaattt agaataggct
     5161 ttctcattta tattccaaat ttgatcattt agcaaaacta ttgatacaca aaatatttct
     5221 acatatgaga atgtttacaa tttgaatttt agaagttgtt tttggatgtg attctatgta
     5281 tgaaaattgt gtaacactat gctcatgcta agaaccgact taacagaatt actgaaataa
     5341 atgtgctgtg aggaatggac agtacggtgc aggtgtcttg gtcatgataa actgtgatga
     5401 ttcttttaaa cactttccaa aaacaactta gttcctttca tcctgaatga gcgtcgttta
     5461 caaacagcag tttgtatgca agcaccattc cgcttcattt catggtgttg ctaatatagt
     5521 tgaaccaagg atatgcattg atacttttca taatttgtaa ataaagttaa aaacagttaa
     5581 aggagtgttt ggtagaggta tatgtatata tacctcactg ccagtgaaat tactttccta
     5641 tggtatatct ccttgccaga aatcactaaa taaaaagact tcaagaatta aaaaaaaaaa
//
