LOCUS       NM_001363319            5747 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus zinc finger protein 644 (Zfp644), transcript variant
            3, mRNA.
ACCESSION   NM_001363319
VERSION     NM_001363319.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 5747)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 5747)
  AUTHORS   Guo,G., Huss,M., Tong,G.Q., Wang,C., Li Sun,L., Clarke,N.D. and
            Robson,P.
  TITLE     Resolution of cell fate decisions revealed by single-cell gene
            expression analysis from zygote to blastocyst
  JOURNAL   Dev Cell 18 (4), 675-685 (2010)
   PUBMED   20412781
REFERENCE   3  (bases 1 to 5747)
  AUTHORS   Okazaki,N., Kikuno,R., Ohara,R., Inamoto,S., Aizawa,H., Yuasa,S.,
            Nakajima,D., Nagase,T., Ohara,O. and Koga,H.
  TITLE     Prediction of the coding sequences of mouse homologues of KIAA
            gene: II. The complete nucleotide sequences of 400 mouse
            KIAA-homologous cDNAs identified by screening of terminal sequences
            of cDNA clones randomly sampled from size-fractionated libraries
  JOURNAL   DNA Res 10 (1), 35-48 (2003)
   PUBMED   12693553
REFERENCE   4  (bases 1 to 5747)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC163330.4.
            
            Transcript Variant: This variant (3) differs in the 5' UTR compared
            to variant 1. Variants 1-5 all encode the same isoform (a).
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR10223970.7703.1,
                                           SRR10223969.5755.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164139, SAMN01164142
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-299               AC163330.4         204686-204984       c
            300-356             AC163330.4         203797-203853       c
            357-417             AC163330.4         174939-174999       c
            418-753             AC163330.4         146454-146789       c
            754-2636            AC163330.4         144571-146453       c
            2637-3350           AC163330.4         143764-144477       c
            3351-3956           AC163330.4         142985-143590       c
            3957-4059           AC163330.4         127694-127796       c
            4060-5747           AC163330.4         124895-126582       c
FEATURES             Location/Qualifiers
     source          1..5747
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 51.43 cM"
     gene            1..5747
                     /gene="Zfp644"
                     /gene_synonym="1110068L01Rik; BM-005; D5Ertd689e; Zep-2"
                     /note="zinc finger protein 644"
                     /db_xref="GeneID:52397"
                     /db_xref="MGI:MGI:1277212"
     exon            1..299
                     /gene="Zfp644"
                     /gene_synonym="1110068L01Rik; BM-005; D5Ertd689e; Zep-2"
                     /inference="alignment:Splign:2.1.0"
     exon            300..356
                     /gene="Zfp644"
                     /gene_synonym="1110068L01Rik; BM-005; D5Ertd689e; Zep-2"
                     /inference="alignment:Splign:2.1.0"
     exon            357..417
                     /gene="Zfp644"
                     /gene_synonym="1110068L01Rik; BM-005; D5Ertd689e; Zep-2"
                     /inference="alignment:Splign:2.1.0"
     exon            418..2636
                     /gene="Zfp644"
                     /gene_synonym="1110068L01Rik; BM-005; D5Ertd689e; Zep-2"
                     /inference="alignment:Splign:2.1.0"
     exon            2637..3350
                     /gene="Zfp644"
                     /gene_synonym="1110068L01Rik; BM-005; D5Ertd689e; Zep-2"
                     /inference="alignment:Splign:2.1.0"
     exon            3351..3956
                     /gene="Zfp644"
                     /gene_synonym="1110068L01Rik; BM-005; D5Ertd689e; Zep-2"
                     /inference="alignment:Splign:2.1.0"
     exon            3957..4059
                     /gene="Zfp644"
                     /gene_synonym="1110068L01Rik; BM-005; D5Ertd689e; Zep-2"
                     /inference="alignment:Splign:2.1.0"
     exon            4060..5747
                     /gene="Zfp644"
                     /gene_synonym="1110068L01Rik; BM-005; D5Ertd689e; Zep-2"
                     /inference="alignment:Splign:2.1.0"
     regulatory      5393..5398
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zfp644"
                     /gene_synonym="1110068L01Rik; BM-005; D5Ertd689e; Zep-2"
                     /note="hexamer: AATAAA"
     polyA_site      5416
                     /gene="Zfp644"
                     /gene_synonym="1110068L01Rik; BM-005; D5Ertd689e; Zep-2"
                     /note="major polyA site"
     regulatory      5726..5731
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zfp644"
                     /gene_synonym="1110068L01Rik; BM-005; D5Ertd689e; Zep-2"
                     /note="hexamer: AATAAA"
     polyA_site      5747
                     /gene="Zfp644"
                     /gene_synonym="1110068L01Rik; BM-005; D5Ertd689e; Zep-2"
                     /note="major polyA site"
ORIGIN      
        1 gtttggtttt ggcacgggag agcagcggtg cagcgttgct gccgcccccc gtgggtctga
       61 ttggcacggg agctccggcg gcccgagagc acgggcgcgc ctcgctggct tcccccggcg
      121 gccggcggcc aggcagaggc gggaaagccg cgcgcctgcg ccgtgggaac cgaggccgga
      181 ggcgagaagc ggggagcgga gggggccgtt ggagccgagt agcgtacaga gcggcgtgtg
      241 acgcggggac gccgcgcgct cccaacgtcg ccccggtttg acgcacacgg caccaaactg
      301 tctgattccc tggcctttgt gtccctggga gcttaatctc tgccagagga aagcaggctt
      361 gatttaaatt tggatgagat tattcttgca tcaagatgtt aataagccaa aatttagact
      421 aaaggtgtta aatgatcttg ccaacaatat ggatgatttg aagataaaca ccgacattac
      481 tggtgctaaa gaagaactcc aagatgacaa caattttatc tctgagaaag acagtggagt
      541 tcataaacca aaagattgtc agacatcatt tcagaaaaac agttcattga ctcgatctga
      601 ggaattgtca gaggatcaat cagaacaagc cttaagtgga ggccagtctg ctttgtttct
      661 ccctgccagc actcctgctg ttcctactga aaactttccc ttgcccacag gagctgttgt
      721 taatggacca gtctcatgct cctcctccac aaagacttcc aatatgaatg aaggtagtgt
      781 ttcattaacc cctggacagc ctgcagatca gctagcagca gagtcttgct ccactttgaa
      841 ggcagcagct gatcatcagc tgtctacacc acaaaaagca agtcaacacc aagttctgtt
      901 tttgttatca gatgtagcac atgctaagaa tccaacccat tccattaaaa aagtacctac
      961 ctctgcttta gttggttgtg atgttcagaa ttcagtaggg aataacatga agtcagagag
     1021 cactttacta agtcaagcag aggtgggtca gggcgacgcc tccacagtgg tcagagacga
     1081 ctgtgtcagc gcgttagcag tgatttcctc aggtacagac gaatttaggt cagaaaatga
     1141 tacaaactgg gatccccaaa aagagttcat tcagtttctt atgactagtg aagagacggt
     1201 ggataagccc ccagctcatt ctaaagtagt aggtctagaa aaaaagagaa agagaaaaat
     1261 ggatgtgagc aagatcactc gctacacaga ggactgctac agtgactcag gccgtgcacc
     1321 tggaaaatca aaaattcttc aggttgactt tctagggcaa aacgaggaga tgcaagcaat
     1381 agactcacag aactacacat tatcaaaagt gaaacccgag tcagctggtg gagacttgga
     1441 gtctgtggac acttttcagc atctagttta taactcagat aaatgtggag aggataattc
     1501 acctgttcat actcgcactt taatttcaaa taccttaaaa aagaaatgtg aagagagtga
     1561 tcctgagtca cctgttgctt tcagtactga agagccatca ttctacccct gtacaaagtg
     1621 caatgtgaat tttagggaga aaaagcatct ccacaggcat atgatgtatc atttagatgg
     1681 gaatagtcac tttcgccacc ttaatgtccc caggccatat gcttgtagag aatgtggacg
     1741 gacatttcga gatcgtaatt cactactaaa gcatatgatc attcaccaag aaagacggca
     1801 gaagctgatg gaagagattc gtgagctgaa agagctccag gatgaaggca gaagtgctcg
     1861 actccagtgc cctcagtgtg tgtttggtac caattgccct aagacgtttg tgcaacatgc
     1921 aaaaacccat gagaaagaca aacggtacta ctgctgtgag gagtgtaact tcatggcagt
     1981 gacggagaat gagctggaat gccatagggg catcgcccac ggagcagcag tgaagtgtcc
     2041 tgttgtgagt tcagaagtaa ctcagagaaa aacacaaaag aagacttcag tgaaagactc
     2101 tgttatagga tcatccaaaa aacctgctac ttacctatgt aagatgtgtc ccttcactac
     2161 ttcagccaga agtattctga agaagcacac ggagtatttg cattcctcgg cgtgtgttga
     2221 ctcctttggt aatccactgg gacttgacaa aagaaaaaat gacagcctcg aggagtctgt
     2281 agatgtcgat agcaccaagt cattagctaa gcagcagcca agtacatttc caaagaactc
     2341 tgctttaaaa caggatgcta aacggacatt tggatcaagc tcacagtcaa gtaatttttc
     2401 aaaatttcat aagcggccac atagaataca aaaagcccgg aaaagcattg cccaatctgg
     2461 tgtaaattcg tgcagtcaaa acaagtctcc tcacaagaac gttatggtta agagcagcac
     2521 tgaccaacaa ccaaagtatt tccatcaggc cccaagagaa aaacctaacg ccagggcaga
     2581 cagcagttat ttatatagac acaagtataa caactaccgg acgatcagaa aatcagaccc
     2641 tcataatgca gacaccaaaa ggccagaaaa cgagaaagac cacaagcgtg tagctgtgaa
     2701 aagagtagct aaggcctcaa agaaggaaag ctctgctgga gaggacttgg atagctatcc
     2761 cgactttctg cataaaatga ctgttgttgt tttgcaaaag cttcattctg ataagaaaga
     2821 tagttacgaa acagaagatg acagctcctg ggataacgtt gagttaggtg actacactac
     2881 acaggccatg gaagaagaag cctacagtga ccttagtcaa gaacatgtaa acttattgcc
     2941 cctgtttaaa agcaagatag agggccaggg ccctggagac agtgctgccc tgagttacga
     3001 tcagaatgat ggcttctact ttgaatatta tgaagacggt ggcactaaca gctttttaca
     3061 ggatatacat gatcctcagc atttggaaaa cccagaaacg cctttgtcaa agcatagttc
     3121 tgtttttcat tggactgatt tgtctcttga gaagaagtca tgtccttatt gcccagcaac
     3181 atttgaaaca ggtgttgggt tgtcaaatca tgtccgagga catcttcaca gagcaggatt
     3241 gagctatgaa gcccgtcatg ttgtatcacc agaacaaata gccacaagtg acaagatgca
     3301 gcacttcaaa agaactggca acgggacgcc tgtgaaacga gttagaaaag ctatagagaa
     3361 gtctgaaact acttccgaac atacttgtca gctctgtggt ggttggtttg acacaaagat
     3421 tgggttatca aatcatgtca gaggccatct gaaaagactt gggaaaacta aatgggatgc
     3481 tcacaaatct ccaatctgtg ttctgaatga gatgatgcaa aacgaagaga agtatgaaaa
     3541 gatcctgaag gcgctcaaca gtcgccgcat tatccccaga ccgtttgtag ctcagaaact
     3601 ctcctcaggc gatgacttcc tatctcacaa tgtcttacct cttgatgaat accacaatgg
     3661 cctaaagaca gaggctctct cagtgtctgc atcagaggaa gaagggctgc atttcttaag
     3721 tgagtgtggt gaaagaaagc ctgaactgcc cagtgggaga aagaaccagt ctcttacact
     3781 gatagaactt cttaaaagta gaaggctagg cgaagaaagg aattctgcag tctctcctca
     3841 caagacccat aaccagacag caagaaagag atttgttcag aaatgtgttc ttccattaaa
     3901 cgaagacagt ccgttgatct atcagccaca aaaaatggac ttgactgtgc actcagccat
     3961 agattgtaag cagaagaaat caaggtcaag atctggaagc aagaagaaaa tgctaacgtt
     4021 gcctcatggt gctgacgagg tttacattct ccgatgcagg ttttgtggcc tagtctttcg
     4081 gggaccattg tctgttcagg aagactggat taagcactta cagcgtcaca ttgtaaacgc
     4141 taatcttcca cggactggag ctggcatggt ggaagtcaca tcactactta aaaagcctgc
     4201 ctctatcaca gaaacgtcgt tttctttact aatggcagaa gcagcatcat agaaccagga
     4261 atccttttca atagcaaatt taattggatg taaatttaaa atttgtgtct tttttttgta
     4321 agccacatga aagtatccat tataaatact aaagtaggaa gaatgaggga ccgtaaatta
     4381 gagtggcatc ggagcaaaca atacttcaga caagacagta agtagtcata tattttatat
     4441 agggtggaga tgtgttctta aggtttacta agttttgttg gctgagttta ctcaactaaa
     4501 ggtcctacat ctgagagcca tttgtaaagt gttgcacatg aatccttaca gacagactta
     4561 ctgaaagatt atgttctcta cagtgttacc agaatcaagg ctctggtttt tccccacaca
     4621 tagaaaaata agaaattata ttttgttggt atgtatttag tgttttgtat aataccagga
     4681 actgctaact aaatttactc aacttagggc attaaatatc atgtacttca tagtttgaga
     4741 ctgttccctc aaatagggca gagtactatt ctatctagat gtgttaagtg tttttttaaa
     4801 atcataatgg aacggttttt ttttatatat atatacatat atatatatat atactaaaaa
     4861 gttggagcga gatttgttta aacaagtatt tctaaaagaa atattgtaca tagtcctgga
     4921 aattatttgt ggtaaggaaa tattctttaa tccagttgca tttctcagac aatgaagtgg
     4981 tgcgtccatg ctacctcctg ctttgtcaac aaagatgcta tttacccttt ccatttgtat
     5041 cataatagat tttaaaaatc taatgttctt tattgcaaga catacttttg ttaacagatt
     5101 tgtttctttg taacgttttc catacgtttg acatgcttac aggacagggt tgtctttatt
     5161 taacattgta gaaatgtaat taataaacaa ggctcactac acaatttaga ataggctttc
     5221 tcatttatat tccaaatttg atcatttagc aaaactattg atacacaaaa tatttctaca
     5281 tatgagaatg tttacaattt gaattttaga agttgttttt ggatgtgatt ctatgtatga
     5341 aaattgtgta acactatgct catgctaaga accgacttaa cagaattact gaaataaatg
     5401 tgctgtgagg aatggacagt acggtgcagg tgtcttggtc atgataaact gtgatgattc
     5461 ttttaaacac tttccaaaaa caacttagtt cctttcatcc tgaatgagcg tcgtttacaa
     5521 acagcagttt gtatgcaagc accattccgc ttcatttcat ggtgttgcta atatagttga
     5581 accaaggata tgcattgata cttttcataa tttgtaaata aagttaaaaa cagttaaagg
     5641 agtgtttggt agaggtatat gtatatatac ctcactgcca gtgaaattac tttcctatgg
     5701 tatatctcct tgccagaaat cactaaataa aaagacttca agaatta
//
