LOCUS       NM_001004190            4732 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus zinc finger protein 560 (Zfp560), mRNA.
ACCESSION   NM_001004190 XM_146869
VERSION     NM_001004190.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4732)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AC166098.3.
            
            [WARNING] On Aug 14, 2024 this sequence was replaced by
            NM_001004190.4.
            
            On Nov 17, 2006 this sequence version replaced NM_001004190.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK141494.1, BC141211.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164139 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-142               AC166098.3         172029-172170       c
            143-328             AC166098.3         141076-141261       c
            329-417             AC166098.3         139765-139853       c
            418-544             AC166098.3         138850-138976       c
            545-625             AC166098.3         137544-137624       c
            626-708             AC166098.3         136593-136675       c
            709-4732            AC166098.3         132148-136171       c
FEATURES             Location/Qualifiers
     source          1..4732
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="9"
                     /map="9 7.52 cM"
     gene            1..4732
                     /gene="Zfp560"
                     /gene_synonym="2310030G09Rik; Znf560"
                     /note="zinc finger protein 560"
                     /db_xref="GeneID:434377"
                     /db_xref="MGI:MGI:1915280"
     exon            1..142
                     /gene="Zfp560"
                     /gene_synonym="2310030G09Rik; Znf560"
                     /inference="alignment:Splign:2.1.0"
     exon            143..328
                     /gene="Zfp560"
                     /gene_synonym="2310030G09Rik; Znf560"
                     /inference="alignment:Splign:2.1.0"
     exon            329..417
                     /gene="Zfp560"
                     /gene_synonym="2310030G09Rik; Znf560"
                     /inference="alignment:Splign:2.1.0"
     exon            418..544
                     /gene="Zfp560"
                     /gene_synonym="2310030G09Rik; Znf560"
                     /inference="alignment:Splign:2.1.0"
     exon            545..625
                     /gene="Zfp560"
                     /gene_synonym="2310030G09Rik; Znf560"
                     /inference="alignment:Splign:2.1.0"
     exon            626..708
                     /gene="Zfp560"
                     /gene_synonym="2310030G09Rik; Znf560"
                     /inference="alignment:Splign:2.1.0"
     exon            709..4732
                     /gene="Zfp560"
                     /gene_synonym="2310030G09Rik; Znf560"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3333..3338
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zfp560"
                     /gene_synonym="2310030G09Rik; Znf560"
                     /note="hexamer: AATAAA"
     polyA_site      3357
                     /gene="Zfp560"
                     /gene_synonym="2310030G09Rik; Znf560"
                     /note="major polyA site"
ORIGIN      
        1 gggtgtgaag ctcctttgtt cctcagaggc ggggtccgcc cctcggcggc tgcacttcct
       61 cgggctgtgc gggccagcgc ggccggaacc tccgctgcgc gcttggttct ctgtctttat
      121 tttcaggaat tggcgagttc agataatatt tgatgatgag tgatccgtgt cctcaagaat
      181 gcaagtaaca ctgtagagag aggaaagatc accagtggcc acttatgcgt ataaactgcc
      241 aggacgtgtc cttcaagttc tggaagagag tgctccagtg catttcacca tcatcttcac
      301 aggatggaag ctatcagttt gtcctatggt ttattttcta ggaacccaag ctactttcat
      361 aatgaaaaaa cagagatgga aaagacggtg tctgactgct ggacaagtag ttaccaggag
      421 tcagtgacct ttgaggatgt ggctgtagac ttcacccagg aggaatggat tttattggac
      481 acaaaacaac ggaaccttta cagagaggtg atgctggaga actaccagaa cctggctaca
      541 ttaggatgtc agctcatcaa atctagatac agcttttgct tggaggctga agagttgaga
      601 gtagtcaaga aaagagttca ccaagactgg gctatacaac ttaaccccag agggacaatg
      661 tttcagcggg atatttttca gttaaaaatg tcaaatgaga tacaactgcc aaatagccac
      721 aatggaaagg agctctgtga cattaagcca cctggagaaa tcatcaaaga gcctccatgc
      781 agtctgacat acataggtat tgaaaacaca gggaacattt atgattgtgt tcagtatgga
      841 cagctctttc ctgtttgtcc taaggagact tcctctgcag acactggtcc tggattacgc
      901 cagtatggaa aagacttcag tatgattgca agtacagctt accagacaac atgtgtacaa
      961 agcaaattca ttgaatccag tgaatttcag caagtctttg atagtcagtc atcccttcag
     1021 aggcctgggg gaagtcacag tgaagacaaa ctctctgagt cggtgcagtg tggtgatact
     1081 tttagtccag ccttgagtca tgctgagagt gctcaaacat gcactggaaa aaaatcctat
     1141 gaatgtaagg aatgtgggaa gagttttaaa tattctgcca accttaatat tcatatgcgt
     1201 actcacactg gcgagaaacc ttaccaatgt aaggaatgtg ggaaagcctt ttctaggtgt
     1261 tatccactaa ctcagcactt aaaaactcac actgaagaga agccctttga atgtaaggtt
     1321 tgtgggaaat gctttagaaa ttcctcatgt cttaatgacc actttcgggt tcacactgga
     1381 ataaaaccct ataaatgtaa ggactgtggc aaagccttta ccgggcgatc tggccttagt
     1441 aaacatttac caacacatac tggagagaag ccttacgaat gtaaggagtg tgggaaagcc
     1501 tttccttcaa cctcaggcct tattaaacat atgaaaagtc acatgggaga gagacccttt
     1561 gaatgtgatc actgtggaaa ggcctttgct tcttcctcaa cccttattac acatttgaga
     1621 acacacactg gagagaagcc cttcgagtgt caagtctgtg ggaaggcatt cacatgttct
     1681 tcttatcttc gaattcacat gcggactcac actggagaga agccctatgt atgtaaggag
     1741 tgtggcagag ccttcactga gcgcacaagc cttactaaac atttacgaac acatactgga
     1801 gaaaatccct ttgagtgcaa tatgtgtgga aaagcgtttg catgttcctc ctaccttcat
     1861 aatcacatac ggactcacac tggagagaaa ccttatgtat gtaaggaatg tgggaaagcc
     1921 ttcactgttt cttcacatct aagtaagcat gtaagaattc acacaggaga gaaaccccat
     1981 aagtgtgagg agtgtgggaa agcattcact gtgcgctctg gccttacaaa acatatacga
     2041 actcacactg gggagaagcc ctacaattgt aaagaatgtg ggaaagcgtt cactacatcc
     2101 tcaggcctcc ttgagcataa aagaagtcac acaggagaga agccatatga atgtgaccag
     2161 tgtggaaagg cctttgcttc ttcctcctat cttattgcac atttgagaat tcacactgga
     2221 gagaagccct ttgagtgtaa tgagtgtggg aaagctttta cttgttcctc ctaccttcat
     2281 attcatatgc ggactcacac tggagagaag ccctatgact gtaaggagtg tgggaaaaca
     2341 tttgctgttt actctcatct aagtaaacat gtaaggattc acagtggaga gaaagcctac
     2401 acttgtaaaa gtgatggaat agccttcagt cgttctcatc gtacagaaca cttgaaaagt
     2461 cttgagataa attcttttgt tggagggaat gaagaaactg ctttagaaag ttctattgct
     2521 ttaacggtgc atccaaattc acaatggcaa gaaagcttat cagtgtaagc catttgtaaa
     2581 gtgattgttt atatcctagt tgttggtttt ctgtctaaac tacaccccca cagttcctgg
     2641 cagcagccag gtatgctcct ccccacagtt acctggcaac aaccatgtag gcttggccca
     2701 gtataaaagg agctgcttgg tccctcctct ctctcttgcc ccttgtgccc cctcccattc
     2761 cctccccccc ctccatgtgg ccatagctgg actcgacatc tctactcact ccttctctct
     2821 gcctctctct gcctctgcta ccgtcttaac tcccctcctc atgccctgaa taaactctat
     2881 tctatactat actggcgtat gtctggtccc tcagggtgaa gggatacttc tgcatggtcc
     2941 tcctgtgtca cccctttccc tcacacccca ccagaacata ctcctatagc tctttctctt
     3001 tttataatca caacactagt tgacttcaaa gacataaaag aaatcatgtt gcaaagttgc
     3061 ctcatgagga ttaaagaacg gaggaagtga tcagaatgct caaaacccag ctcacacaaa
     3121 ctcactttga agcttcacaa agtcacaaac atggacagtc tttgctgttt ctaaggcttt
     3181 ttataagtat gtgagagaaa ttctgttgac agacaatgtg gaaaattgta ttttgctcag
     3241 ttctttgatg attacccaca gtacaacagt ggaggacttt gtgaacgtaa gaaatgttgg
     3301 aaagtaatta tttgcattag tcatcaacat tcaataaagt gattcacatt tggaaaactt
     3361 catgtataga atattgggga ttgtttgtat gtcttaagat tttatatact agtagaaatg
     3421 gctttcttgg tggttttata agcttatttt ggctgttttt ttgcattttc aatttttgag
     3481 atttttaata tttgcacata gttttaagat gtacaagctt ctatagaata tactatgaaa
     3541 caattattag gctaattaaa atgtgataca gtaatttggt tttggtatta tgaagcactt
     3601 tttactatca gaaatttcag gtaattcaca caattaactg tattcactaa ttgtactttt
     3661 aagttgttca ttttataatt gaaagtttgt aacctttatc agtaactcat aaacattaac
     3721 ttgttaaaga caggctctca ctgtttagct ctggaactca ctgtgtaaac tagcttggct
     3781 ttgaactcac agaggtcctc tgcctcccaa gtgctgggat taaatgcata cactgccatg
     3841 cccaactata cttcatattt aaataagata atacattgtt tttagttttt atgtgtctga
     3901 cttattttca cctaacaaaa tgtcttctag tttcatcact gctgtcttgg atgacagaca
     3961 gacttttctt taaaaaacaa aagggggtag acattttttt atgcacagac tcaaaatatt
     4021 tgtatgtatg tgtatatgta ttgtgtgttt gcatgcgtct ctgtgtgtat gaatgtggcc
     4081 tctacagcta agagacttgg gttttatcct agctttccac ttgtagacag agtcaattta
     4141 ttatctttcc agcccctatg aaagtttctt tacacaaaag aacacttaga ttgtttacat
     4201 actttattgt tggtactgtt acattgaata tatattacag gtatctcttt aagcattcct
     4261 taagtgtatg gtcataatca gtttgttgga gtatttagtt ggtgtagtta tagttttatg
     4321 aggagttttg atgctgcttt ccagataact ctaccaatgt ttctttcatt caaaacagaa
     4381 atatatgcaa acagttttgt ctttcttgtt tacatgtcat tcctttttct tatttaattg
     4441 tctcaaactt gcaatattat gatgaatata agttccaagc agggttattg ttgtacttga
     4501 tcttaaagga atagctctgg acttgcactg agaatgatga cagctactgg cttgtcatat
     4561 gtatacagtc actagcaaat taaggtgcaa tcatttctgt atccaacttg agagtatcat
     4621 gaaaggatgt taacctttta agtgcctttt atatttgtaa cattttcttt tttctttttt
     4681 acaactcatt accttttgtt ttttattaaa ctaataaaat ttattttaac at
//
