LOCUS       NM_028935               3839 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus zinc finger protein 558 (Zfp558), transcript variant
            1, mRNA.
ACCESSION   NM_028935 XM_356228 XM_906919
VERSION     NM_028935.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3839)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 3839)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC162941.5, CF741986.1, BC048749.1 and AK005691.1.
            
            On or before Jul 26, 2009 this sequence version replaced
            XM_906919.2, XM_356228.4.
            
            Transcript Variant: This variant (1) represents the longer
            transcript.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7345562.604970.1,
                                           SRR10662772.3787146.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164139 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-27                AC162941.5         25382-25408
            28-292              CF741986.1         29-293
            293-775             BC048749.1         1-483
            776-1701            AK005691.1         1-926
            1702-3839           AC162941.5         42750-44887
FEATURES             Location/Qualifiers
     source          1..3839
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="9"
                     /map="9 7.05 cM"
     gene            1..3839
                     /gene="Zfp558"
                     /gene_synonym="1700007A21Rik; 4932704I17Rik; Zfp558-ps"
                     /note="zinc finger protein 558"
                     /db_xref="GeneID:72230"
                     /db_xref="MGI:MGI:1921681"
     exon            1..206
                     /gene="Zfp558"
                     /gene_synonym="1700007A21Rik; 4932704I17Rik; Zfp558-ps"
                     /inference="alignment:Splign:2.1.0"
     exon            207..315
                     /gene="Zfp558"
                     /gene_synonym="1700007A21Rik; 4932704I17Rik; Zfp558-ps"
                     /inference="alignment:Splign:2.1.0"
     exon            316..433
                     /gene="Zfp558"
                     /gene_synonym="1700007A21Rik; 4932704I17Rik; Zfp558-ps"
                     /inference="alignment:Splign:2.1.0"
     CDS             403..1626
                     /gene="Zfp558"
                     /gene_synonym="1700007A21Rik; 4932704I17Rik; Zfp558-ps"
                     /note="zinc finger protein 558, pseudogene"
                     /codon_start=1
                     /product="zinc finger protein 558"
                     /protein_id="NP_083211.1"
                     /db_xref="CCDS:CCDS52729.1"
                     /db_xref="GeneID:72230"
                     /db_xref="MGI:MGI:1921681"
                     /translation="MAATIIPLIYAQSSLYPLSPEEGQMGKKGLATEFLTSLLEELVS
                     FEDVTVQFTQEEWALLDPLQRTLYRNVTLENWKNLASLGQHLDKPNLISQLEEEDKVI
                     REDRGIIPGIHPDLEKVLKAKWLTPKNLIFSKEHDNGGKTVQLEERGHHGMKVNECNQ
                     CFKVFSTKSNLTQHKRIHTGEKPYDCTQCGKSFRSKSYLTVHRRIHNGEKPFECNHCG
                     KAFSDPSSLRLHVRIHTGEKPYECSQCFHVFRTSCNLKSHKRIHTGGENQHECSQCGK
                     AFSTRSSLTGHNSIHTGEKPFECQECGKTFRKSSYLTQHLRTHTGEKPYECNECGKSF
                     SSSFSLTVHKRIHTGEKPYECSHCGKAFNNLSAVKKHLMTHTGQKPYGCNHCGKSFTS
                     NSYLSVHKRVHNRWI"
     exon            434..522
                     /gene="Zfp558"
                     /gene_synonym="1700007A21Rik; 4932704I17Rik; Zfp558-ps"
                     /inference="alignment:Splign:2.1.0"
     exon            523..649
                     /gene="Zfp558"
                     /gene_synonym="1700007A21Rik; 4932704I17Rik; Zfp558-ps"
                     /inference="alignment:Splign:2.1.0"
     exon            650..745
                     /gene="Zfp558"
                     /gene_synonym="1700007A21Rik; 4932704I17Rik; Zfp558-ps"
                     /inference="alignment:Splign:2.1.0"
     exon            746..840
                     /gene="Zfp558"
                     /gene_synonym="1700007A21Rik; 4932704I17Rik; Zfp558-ps"
                     /inference="alignment:Splign:2.1.0"
     exon            841..3839
                     /gene="Zfp558"
                     /gene_synonym="1700007A21Rik; 4932704I17Rik; Zfp558-ps"
                     /inference="alignment:Splign:2.1.0"
     polyA_site      1665
                     /gene="Zfp558"
                     /gene_synonym="1700007A21Rik; 4932704I17Rik; Zfp558-ps"
                     /note="major polyA site"
     polyA_site      1702
                     /gene="Zfp558"
                     /gene_synonym="1700007A21Rik; 4932704I17Rik; Zfp558-ps"
     regulatory      2475..2480
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zfp558"
                     /gene_synonym="1700007A21Rik; 4932704I17Rik; Zfp558-ps"
                     /note="hexamer: AAGAAA"
     polyA_site      2494
                     /gene="Zfp558"
                     /gene_synonym="1700007A21Rik; 4932704I17Rik; Zfp558-ps"
                     /note="major polyA site"
     regulatory      3820..3825
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zfp558"
                     /gene_synonym="1700007A21Rik; 4932704I17Rik; Zfp558-ps"
                     /note="hexamer: ATTAAA"
     polyA_site      3839
                     /gene="Zfp558"
                     /gene_synonym="1700007A21Rik; 4932704I17Rik; Zfp558-ps"
                     /note="major polyA site"
ORIGIN      
        1 cgccagccgg gagcgccctc tgcctagtgg ccctggactc ctgctacctc ccgaaagccc
       61 caggctgctt ccgcagccag cgataaaacc cgagctcttc cagctcgcag ccctgggaat
      121 gctttttgtt ctcacagagg ggggcgtggc aggcgagctg agggatggtc agccagcggg
      181 tcctgttcta tctcctgagc tgcaagacaa gaaaaacatc atgcaaactc aaacttgtgt
      241 tggaccctca atgttgtgtt gaaaacgcct gaatgtccac ctgccctcat taatctatta
      301 atttcatgta accagagtgc tgtcctttgt atctgtggga atcagaagtg tatctgcccc
      361 atccactgcc ctgtgttcag gagctctagt gttggagttt ggatggcagc aactatcatt
      421 cctctaatat atgctcagtc ttctctgtac ccactgtctc ctgaggaagg acagatgggg
      481 aaaaaagggc tagctactga gttcttgaca agtttgttag aggaattggt gtccttcgaa
      541 gatgtgactg tacagttcac acaggaggag tgggctctgt tggatccttt acaaagaact
      601 ctgtacagga acgtaacgct ggaaaactgg aagaacctgg cctcacttgg gcagcacctt
      661 gataaaccaa atctgatatc ccagttggaa gaagaagaca aagttataag agaggacaga
      721 ggaattattc caggcatcca tccagatttg gagaaggtac ttaaagccaa atggctaact
      781 cctaagaatc ttatttttag taaagaacat gataacggtg gaaaaacagt acaactggag
      841 gaaagaggtc atcatggaat gaaagtcaat gagtgcaatc aatgttttaa agtcttcagc
      901 acaaaatcta accttactca gcacaagaga attcatactg gagaaaaacc atatgactgt
      961 acccagtgtg gaaaatcctt ccgcagcaaa tcttatctta ctgttcacag aagaatccat
     1021 aatggggaaa aaccttttga atgcaatcac tgtgggaaag catttagcga tccctcatcc
     1081 ctcagacttc atgtaagaat tcacactggg gaaaaaccct atgaatgcag ccagtgtttt
     1141 catgtctttc gtaccagttg taacctcaaa agccacaaaa gaattcacac agggggtgaa
     1201 aatcaacatg aatgttctca gtgtggaaaa gccttcagta caaggtcctc gctcactgga
     1261 cataatagca ttcatactgg agaaaaacca tttgagtgcc aggagtgtgg gaaaaccttc
     1321 aggaagagct catatctaac ccagcattta agaactcaca ctggagagaa gccctatgaa
     1381 tgtaatgagt gtggaaaatc tttcagcagt agtttttctc taactgtaca caagagaata
     1441 catactggag aaaaaccata tgaatgcagt cactgtggaa aagcttttaa taatctctca
     1501 gctgtgaaaa agcacttaat gactcatact ggacaaaagc cctatggatg taaccactgt
     1561 ggaaaatctt ttaccagtaa ctcctacctg tctgtgcaca aaagagtaca taataggtgg
     1621 atatgaattg tggtgaaaaa ttactaagga aatttctgtg caaaaccttt gttgatccta
     1681 agataatttg agagaatttg caccaggtgt atacattatc tattgctcta tatatcctcc
     1741 gccctacccc acccccaaat ttgtggtttc agacaaatac ctcacatttt gtaggtcagg
     1801 aatatgaagg caccttagta ctgtagtttt tttctaagaa cttctcatga gcttgcattc
     1861 aagacttcaa gcagagctgc agttttctaa atgtgttatt gaaggaacca ttactaggat
     1921 gtctcacaca caggcctagt gattttccac tggttattga caggaaactg tcagtgcttc
     1981 accatgtagg cctctctgtg tgattatata tctctataat atggcaaaag aacaactcac
     2041 tacccccaag ttccaagaga gccagttaaa aatgaggtat catttatgac cttggctcca
     2101 gaaggttgac tttcacttct tccctgttat actctcaatc acagaccaac cttgatactg
     2161 tgtgagagaa aactacagaa tacctgaggg ccaggaggta gctttctgag acgcgtttga
     2221 gaaacttgcc atgaaattag tgaagagaaa tcagcaatag atcgtcattc ttttgataag
     2281 tatgaaatgc cattcagtta attgttaaat atgtatgcaa atatgtctat gtgataggag
     2341 ttttttagtt catgttgtat atgccccaaa gatatgttgg ggagatcttg tgggtagaat
     2401 aatgagcgtg tggcaatggc ctctagtgat cccaatcttt tcagtctttc tggtgggcaa
     2461 caactgaaaa atacaagaaa ttcagaaaac tgtacagcaa agtgttcaca ttactgacca
     2521 caagtagtga agtgctctgc agtgatcatg ggaaatgttt gactgtttcc ggtcttgaag
     2581 aggaatgata atggtttctg aaaaaactcc ttaaactcaa agctattggc aagcctttga
     2641 ggtgtcctct aatgaaggaa aaactttgca gtgattcctt ctaagcatat aaattagagg
     2701 cataccttag gaaagtgaag gaatgcatgc cagagtgctt tagcttcagc tctctattga
     2761 gaaattgtgt aatttatact gaaaatgaaa tggatgagtg tggggtttct ctcagtaggt
     2821 agtatcttca ggctcgatta ccagattatt gatttacagt tttgttctat aaccatgtat
     2881 gtttatatgt atgtcttcac tgcaccccct gcccacaaac aagcccttaa catttccaaa
     2941 tcctcagtgc agcgttcttg tagcttatct tccaaagagc tgggggtact agcacacaat
     3001 actacttgta gtacttagag ctgggggtaa tagcacacaa tactacttgt agtacttaga
     3061 gctgggggta ctagcacaca atactacttg tagtacttag agctgggggt actagcacac
     3121 aatactaatt gtagtactta gagctgggga tactagcaca caatactact tgtagtactt
     3181 aggagactgg caatatggat tttgaatttg atgccagcct gacaagctga catagtattt
     3241 ttgtcagagt atggtacttt ttgatgttaa tcctttttat tctttctgtc ctgcgagtac
     3301 ctggtctcct ttttgtccta cttagagcca acaagatggc tcagtgggtg aagttgcttg
     3361 ccataaaacc tgatcacctc cgtttggttc cccataaccc agacagtgaa aagagagaat
     3421 ggacttccag atgttatcct ctgacaccag cgtgcatgtc agcccaacaa ccaagtaaat
     3481 acgtttttaa atatgtaagc agtactaaaa taatacatca ggatttcttg aagtctaaac
     3541 actgttgcca tgaaatttgg aggctggagg gaaagcctga cttcttactc attttctcct
     3601 cttctcacac tttctgttgg taactagctg taagatctga aataagaact agtttggttt
     3661 ggtttggttt ggtttggttt ggtttggttt ggtatggttt ggcttggctt ttcaagatgg
     3721 ggtttctttg tatagccctg gctatcctgg aactcactct gcagaccagg ctgacctcaa
     3781 actcagaaat ccgcctgcct ctgcctccca agtgctgaga ttaaagacat gcgctacca
//
