LOCUS       NM_146201               3360 bp    mRNA    linear   ROD 05-JUN-2024
DEFINITION  Mus musculus zinc finger protein 553 (Zfp553), transcript variant
            1, mRNA.
ACCESSION   NM_146201
VERSION     NM_146201.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3360)
  AUTHORS   Yu,S., Ma,H., Ow,J.R., Goh,Z., Chiang,R., Yang,H., Loh,Y.H. and
            Wu,Q.
  TITLE     Zfp553 Is Essential for Maintenance and Acquisition of Pluripotency
  JOURNAL   Stem Cells Dev 25 (1), 55-67 (2016)
   PUBMED   26423361
  REMARK    GeneRIF: Novel insights to a newly identified pluripotency factor
            Zfp553 and its role in pluripotency regulation.
REFERENCE   2  (bases 1 to 3360)
  AUTHORS   Guo,G., Huss,M., Tong,G.Q., Wang,C., Li Sun,L., Clarke,N.D. and
            Robson,P.
  TITLE     Resolution of cell fate decisions revealed by single-cell gene
            expression analysis from zygote to blastocyst
  JOURNAL   Dev Cell 18 (4), 675-685 (2010)
   PUBMED   20412781
REFERENCE   3  (bases 1 to 3360)
  AUTHORS   Yokoyama,S., Ito,Y., Ueno-Kudoh,H., Shimizu,H., Uchibe,K.,
            Albini,S., Mitsuoka,K., Miyaki,S., Kiso,M., Nagai,A., Hikata,T.,
            Osada,T., Fukuda,N., Yamashita,S., Harada,D., Mezzano,V., Kasai,M.,
            Puri,P.L., Hayashizaki,Y., Okado,H., Hashimoto,M. and Asahara,H.
  TITLE     A systems approach reveals that the myogenesis genome network is
            regulated by the transcriptional repressor RP58
  JOURNAL   Dev Cell 17 (6), 836-848 (2009)
   PUBMED   20059953
REFERENCE   4  (bases 1 to 3360)
  AUTHORS   Yoshikawa,T., Piao,Y., Zhong,J., Matoba,R., Carter,M.G., Wang,Y.,
            Goldberg,I. and Ko,M.S.
  TITLE     High-throughput screen for genes predominantly expressed in the ICM
            of mouse blastocysts by whole mount in situ hybridization
  JOURNAL   Gene Expr Patterns 6 (2), 213-224 (2006)
   PUBMED   16325481
REFERENCE   5  (bases 1 to 3360)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC133494.4 and AK049208.1.
            
            On Feb 17, 2018 this sequence version replaced NM_146201.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK049208.1, BC026401.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-65                AC133494.4         20127-20191
            66-2633             AK049208.1         66-2633
            2634-3360           AC133494.4         24537-25263
FEATURES             Location/Qualifiers
     source          1..3360
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 69.4 cM"
     gene            1..3360
                     /gene="Zfp553"
                     /gene_synonym="2600009K23Rik; C330013F15Rik; Znf48"
                     /note="zinc finger protein 553"
                     /db_xref="GeneID:233887"
                     /db_xref="MGI:MGI:2384725"
     exon            1..426
                     /gene="Zfp553"
                     /gene_synonym="2600009K23Rik; C330013F15Rik; Znf48"
                     /inference="alignment:Splign:2.1.0"
     exon            427..3360
                     /gene="Zfp553"
                     /gene_synonym="2600009K23Rik; C330013F15Rik; Znf48"
                     /inference="alignment:Splign:2.1.0"
     CDS             438..2213
                     /gene="Zfp553"
                     /gene_synonym="2600009K23Rik; C330013F15Rik; Znf48"
                     /codon_start=1
                     /product="zinc finger protein 48"
                     /protein_id="NP_666313.1"
                     /db_xref="CCDS:CCDS21860.1"
                     /db_xref="GeneID:233887"
                     /db_xref="MGI:MGI:2384725"
                     /translation="MEASPGDEFEHSPQERDGPEIKEEEQLAPTLQVGNTSLKPDGIQ
                     CWDDLWDRREGLGKRQPRDPVPRILGEPRWGQGSNDRAAVCGECGKSFRQMSDLVKHQ
                     RTHTGEKPYKCGVCGKGFGDSSARIKHQRTHTGEKAYRVRPPAPGPPKMPRSRIPAGE
                     RPTICGECGKSFRQSSDLVKHQRTHTGEKPYKCGICGKGFGDSSARIKHQRTHRGDQL
                     PRPVVPRRQPSPAAPAAPHRPKAQDKPYICTDCGKRFVLSCSLLSHQRSHLGPKPFGC
                     DVCGKEFARGSDLVKHLRVHTGEKPYLCPECGKGFADSSARVKHLRTHSGQRPHACPE
                     CNRSFSLSSTLLRHRLTHVEPQDFSLAAYPVVPLIPSPPPPPLGTSPSLTPRSPSHSS
                     DGPFGLPGLEPEPGGPQAGEPPPPLAGDKPHKCPECGKGFRRSSDLVKHHRVHTGEKP
                     YLCPECGKGFADSSARVKHLRTHQGERTRPPPPPSTLLRPHNPPGSVPIVPQSRVQGR
                     PSGPSQLHVCGFCGKEFPRSSDLVKHRRTHTGEKPYKCAECGKGFGDSSARIKHQRGH
                     LALKPFGVGDGPPRPLKEESPAGLE"
     regulatory      3184..3189
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zfp553"
                     /gene_synonym="2600009K23Rik; C330013F15Rik; Znf48"
                     /note="hexamer: AATAAA"
     polyA_site      3204
                     /gene="Zfp553"
                     /gene_synonym="2600009K23Rik; C330013F15Rik; Znf48"
                     /note="major polyA site"
     regulatory      3337..3342
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zfp553"
                     /gene_synonym="2600009K23Rik; C330013F15Rik; Znf48"
                     /note="hexamer: AATAAA"
     polyA_site      3360
                     /gene="Zfp553"
                     /gene_synonym="2600009K23Rik; C330013F15Rik; Znf48"
ORIGIN      
        1 gggctccttc ctggttgtcc cgcgcgggca gtccggctcc gccgtgccag ctgtccatcc
       61 gaggaggcac gccgctagcg ccgcagggca cggctagaac tggtccacgc cgccgccgcc
      121 gccgccgagc ccgcggctcc tccgggtcct agagcagctc gccgaggccc gtgcttccgc
      181 ttcccgtccc gcccagcggc gcccgggacg tgggccgagc cccctcctgg cgtggcgtgg
      241 agcccgtacc cgtgcggctg gctgctgggt tcctgttgta ccgaggggaa cggggcggca
      301 ggtgccctcg gactcaccgg ggccgcgtcc cggtcgtggg ccgacggtgc agcgcgctgc
      361 acagccctgg ggcgccgagc ttcgcggtac agaggacttg aaagcggctg agagccatcg
      421 gtacagggac tgagactatg gaggcttctc cgggggatga gtttgaacac tcaccacaag
      481 agagggatgg cccagagatc aaggaagagg aacagttagc cccaactctc caagtaggaa
      541 acacttctct caaacccgat ggcattcagt gctgggatga tttatgggac cgcagagagg
      601 ggcttggaaa gcgacagcct cgagacccag tcccccggat tctgggagaa ccccggtggg
      661 gacagggcag taatgaccga gctgctgtgt gtggtgagtg tggcaagagt ttcaggcaga
      721 tgtctgattt ggtgaaacac cagaggacgc acacagggga gaagccctac aagtgtggcg
      781 tctgtggcaa gggctttggg gacagctcag cccgaatcaa acatcagcga actcacactg
      841 gagagaaggc ctacagggtc cggccaccgg ccccaggtcc tcccaagatg cctcgatctc
      901 ggattcctgc tggtgaacgc cccacgatct gtggcgagtg tggcaagagc ttccggcaga
      961 gctctgacct ggtcaaacac cagcggacgc acacaggaga gaagccctac aagtgtggca
     1021 tctgtggcaa gggctttggg gacagttcag cccgaataaa gcaccagcgg acacacagag
     1081 gggatcagct gccccggcca gtggttcccc gacggcagcc atccccggca gctccggcgg
     1141 ctccacacag acccaaggcc caggacaagc cgtatatctg caccgactgc ggcaaaaggt
     1201 ttgtgctcag ctgcagcctg ctgagccacc aacggagtca cttaggcccc aaacccttcg
     1261 gttgtgatgt gtgtggaaag gagtttgcgc ggggctctga cctggtgaaa catctgcggg
     1321 tacacacagg tgagaagccc tacctgtgcc ctgagtgtgg caaaggcttt gctgatagct
     1381 ccgcccgggt gaagcatctc cgcacccaca gcggccagag gcctcacgcc tgcccagagt
     1441 gtaaccgtag ctttagcctc agctccactc ttcttcgcca tcgcctcacc catgtggagc
     1501 cccaggactt cagtctcgca gcctaccccg tggtcccgct catccccagc cctcctccac
     1561 ctcctctcgg caccagcccc tcactgacgc ctcggagccc ttcacactcc agtgatgggc
     1621 cttttggcct acctggcttg gaaccagagc ctgggggccc gcaggctggg gagccgcccc
     1681 cacctctggc aggtgacaag ccccacaagt gtcctgagtg tggcaaaggt ttccgacgaa
     1741 gctctgatct ggtgaaacac catcgtgtgc acacagggga gaaaccctac ctctgccctg
     1801 agtgtggcaa aggctttgct gacagttctg cccgagtcaa acacctccgc acccaccagg
     1861 gcgaacgcac tagaccacca ccaccaccat ctactctcct gcggccccat aatccacctg
     1921 gttctgtacc cattgtccct cagtctcgag tgcagggtcg gccctccgga cccagccagc
     1981 ttcacgtgtg tggcttctgt gggaaagagt tcccccggag ctcagattta gtcaaacaca
     2041 ggcgtacaca taccggggag aagccataca aatgtgcaga atgtggtaag ggctttggtg
     2101 acagctctgc tcgaataaag caccagcgtg ggcatctggc cttaaagccc tttggggtgg
     2161 gggatggtcc gccaaggccc cttaaggagg agtcaccagc tggactggag tgatgggaat
     2221 tctagggagg gtagaagccc agggtaccgg agggagggtg tctgcaggtg aaggcagaga
     2281 agagcctggg aaacggtggg agggaagagg aggatgagaa tagctagaaa cagattagag
     2341 actacataac cttcatgctc aggaaactgt cttggttagg cgctgggacc ttgccagtgt
     2401 gagctgtatc gcagcttcta gaacactgcc tagcacagat taggccccca atagttgtaa
     2461 aagctggacc cagttttaaa atcctactgc ctcctgttaa cacgcccctc aactggacac
     2521 agctgtgtcc agcctttagt tcctgcactc aggaggcaaa ggcaggcaga tctcttgaat
     2581 tcatagccag actgatctac agagagttct aggtaagcca gaactctttg gtgaaacaaa
     2641 aaaacaaata aaaacccttg atcctttcag ccttagtctg ggagagcaga ttgttggaat
     2701 tttaggtgtc cagacaaggc gggggcatct tggccaccct gggggtgaag tattgctgtg
     2761 gagaaggcag ttctcacctc agcctgtggg gcactgggcg tggttttatc caagaagggc
     2821 actttgggaa agagcttatg tctgtatgat ttgagggtcc ttcccactca gacactggga
     2881 cctggtaaaa tagaagagcc acgggaggca gaggcaggcg gatttctgag ttcgaggcca
     2941 gcctggtcta cagagtgagt tctaggacag ccagggctat acagagaaac cctgtctcga
     3001 aaaaaacgaa aacaaacaaa caaacaaaca aaaaatagaa gagccagcag gaaccctcag
     3061 agcctccagc ctaggtcatc gtgtggacat ctgcaaaggc cagcctgccg agcaagggcg
     3121 gagccagtgc aggccagagg agcttcaagt ctccacagct aagtgtctgt ctgtctcctt
     3181 attaataaat tgtcccttgt ctgaggtttg tgtgtggtta tgtgtatgtg tgtgcatggg
     3241 taagtacaaa ggccagcaag gactgaagca agtacagaga ctctgtaaag ccctcagcca
     3301 tgagatttaa atgggtcccg agccttatgt ccattaaata aaagacattg tcatagacaa
//
