LOCUS       NM_001379357            2089 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus zinc finger protein 54 (Zfp54), transcript variant 3,
            mRNA.
ACCESSION   NM_001379357 XM_030249759
VERSION     NM_001379357.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2089)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2089)
  AUTHORS   Albertsen,M., Teperek,M., Elholm,G., Fuchtbauer,E.M. and
            Lykke-Hartmann,K.
  TITLE     Localization and differential expression of the Kruppel-associated
            box zinc finger proteins 1 and 54 in early mouse development
  JOURNAL   DNA Cell Biol 29 (10), 589-601 (2010)
   PUBMED   20624068
  REMARK    GeneRIF: Taken together, this suggests a role for ZFP1 and ZFP54 in
            transcriptional regulation in early development.
REFERENCE   3  (bases 1 to 2089)
  AUTHORS   Guo,G., Huss,M., Tong,G.Q., Wang,C., Li Sun,L., Clarke,N.D. and
            Robson,P.
  TITLE     Resolution of cell fate decisions revealed by single-cell gene
            expression analysis from zygote to blastocyst
  JOURNAL   Dev Cell 18 (4), 675-685 (2010)
   PUBMED   20412781
REFERENCE   4  (bases 1 to 2089)
  AUTHORS   Yokoyama,S., Ito,Y., Ueno-Kudoh,H., Shimizu,H., Uchibe,K.,
            Albini,S., Mitsuoka,K., Miyaki,S., Kiso,M., Nagai,A., Hikata,T.,
            Osada,T., Fukuda,N., Yamashita,S., Harada,D., Mezzano,V., Kasai,M.,
            Puri,P.L., Hayashizaki,Y., Okado,H., Hashimoto,M. and Asahara,H.
  TITLE     A systems approach reveals that the myogenesis genome network is
            regulated by the transcriptional repressor RP58
  JOURNAL   Dev Cell 17 (6), 836-848 (2009)
   PUBMED   20059953
REFERENCE   5  (bases 1 to 2089)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   6  (bases 1 to 2089)
  AUTHORS   Barclay,J., King,T.F., Crossley,P.H., Barnard,R.C., Larin,Z.,
            Lehrach,H. and Little,P.F.
  TITLE     Physical analysis of the region deleted in the tw18 allele of the
            mouse tcl-4 complementation group
  JOURNAL   Genomics 36 (1), 39-46 (1996)
   PUBMED   8812414
REFERENCE   7  (bases 1 to 2089)
  AUTHORS   Marine,J.C., Gilbert,D.J., Bellefroid,E.J., Martial,J.A.,
            Ihle,J.N., Copeland,N.G. and Jenkins,N.A.
  TITLE     Chromosomal location of fifteen unique mouse KRAB-containing zinc
            finger loci
  JOURNAL   Mamm Genome 7 (6), 413-416 (1996)
   PUBMED   8662221
REFERENCE   8  (bases 1 to 2089)
  AUTHORS   Bellefroid,E.J., Marine,J.C., Matera,A.G., Bourguignon,C.,
            Desai,T., Healy,K.C., Bray-Ward,P., Martial,J.A., Ihle,J.N. and
            Ward,D.C.
  TITLE     Emergence of the ZNF91 Kruppel-associated box-containing zinc
            finger gene family in the last common ancestor of anthropoidea
  JOURNAL   Proc Natl Acad Sci U S A 92 (23), 10757-10761 (1995)
   PUBMED   7479878
REFERENCE   9  (bases 1 to 2089)
  AUTHORS   Crossley,P.H. and Little,P.F.
  TITLE     A cluster of related zinc finger protein genes is deleted in the
            mouse embryonic lethal mutation tw18
  JOURNAL   Proc Natl Acad Sci U S A 88 (18), 7923-7927 (1991)
   PUBMED   1680234
REFERENCE   10 (bases 1 to 2089)
  AUTHORS   Ihle,J.N., Smith-White,B., Sisson,B., Parker,D., Blair,D.G.,
            Schultz,A., Kozak,C., Lunsford,R.D., Askew,D., Weinstein,Y. et al.
  TITLE     Activation of the c-H-ras proto-oncogene by retrovirus insertion
            and chromosomal rearrangement in a Moloney leukemia virus-induced
            T-cell leukemia
  JOURNAL   J Virol 63 (7), 2959-2966 (1989)
   PUBMED   2542606
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CT009594.4 and CT010433.6.
            
            On Mar 31, 2020 this sequence version replaced XM_030249759.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR1660819.122447.1,
                                           SRR11927935.3097324.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849380, SAMN01164131
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-74                CT009594.4         170339-170412
            75-114              CT009594.4         174427-174466
            115-206             CT009594.4         174832-174923
            207-333             CT010433.6         2858-2984
            334-2089            CT010433.6         6066-7821
FEATURES             Location/Qualifiers
     source          1..2089
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 11.4 cM"
     gene            1..2089
                     /gene="Zfp54"
                     /gene_synonym="2810034D10Rik; KRAB10; mszf83; Zfp-54;
                     Zfp76"
                     /note="zinc finger protein 54"
                     /db_xref="GeneID:22712"
                     /db_xref="MGI:MGI:99201"
     exon            1..74
                     /gene="Zfp54"
                     /gene_synonym="2810034D10Rik; KRAB10; mszf83; Zfp-54;
                     Zfp76"
                     /inference="alignment:Splign:2.1.0"
     exon            75..114
                     /gene="Zfp54"
                     /gene_synonym="2810034D10Rik; KRAB10; mszf83; Zfp-54;
                     Zfp76"
                     /inference="alignment:Splign:2.1.0"
     exon            115..206
                     /gene="Zfp54"
                     /gene_synonym="2810034D10Rik; KRAB10; mszf83; Zfp-54;
                     Zfp76"
                     /inference="alignment:Splign:2.1.0"
     exon            207..333
                     /gene="Zfp54"
                     /gene_synonym="2810034D10Rik; KRAB10; mszf83; Zfp-54;
                     Zfp76"
                     /inference="alignment:Splign:2.1.0"
     exon            334..2089
                     /gene="Zfp54"
                     /gene_synonym="2810034D10Rik; KRAB10; mszf83; Zfp-54;
                     Zfp76"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2061..2066
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zfp54"
                     /gene_synonym="2810034D10Rik; KRAB10; mszf83; Zfp-54;
                     Zfp76"
                     /note="hexamer: AATAAA"
     polyA_site      2089
                     /gene="Zfp54"
                     /gene_synonym="2810034D10Rik; KRAB10; mszf83; Zfp-54;
                     Zfp76"
                     /note="major polyA site"
ORIGIN      
        1 ggaggaagtg tgttgaatgg agctgggatt agaggagtgg cgtgatagct gggactgttc
       61 tttagtgaac ctaggtggat tattggtaga attcttcctt ctctgagaga attggtccac
      121 ttgtcatcta ttcattattc ttcaaagaga aattcaaaga agagaaacaa caagaaatgg
      181 ctgattcttc agtcaacttg tcccagggtc tgttgacatt ccgggatgtg actgtggact
      241 tctcccagga ggagtgggaa tgcctggact ctgctcagag ggctctgtac attgaagtga
      301 tgttggagaa ttacagcaac ctggtatatg tcgagaacta ctgcatatgt gatacagtct
      361 gtcaacatgt gaagactgaa aaggagtctt gtaatgagct tggtgaaatg cttcatgaac
      421 cctccaactg tgccctttat aatagaagcg acactacaga agcctctaac aactacagat
      481 gctgtaagga ccaggatgcc tctcttgact catcaaaccc agatagactt aaaagcacgc
      541 acactggaaa agaacgttgt gaatctaaag actgtgcgaa atcttccagt ttgtgttcca
      601 gcattgctca agatcagaga acaaacagta caaacaaaga acagagacag gaaaaatatg
      661 atgaccattt catctctaca cacagtctca tgcaacaagc aatctatatt ggagagaatc
      721 cacaccagtg tatgaaatat gggaaatgtt tcagtagtgc ctcaagcctc ggggtacagc
      781 agagaactga tactggaaac aaaccctaca agtgcaatat ttgtgacaaa tcctttactg
      841 agtgctcaag tcttaaagaa catcgaaaaa cacatcaaag acttcgtgct ggaacaaacc
      901 cttacaaatg caatgactgt ggaaagtcat tttcatattt gtctgcactt caaagtcatc
      961 ataaaaggca tactggagag aagaggtaca aatgtaaaga atgtggcaaa tcctatgcct
     1021 accgtactgg tctgaagaga catcagaaaa tccatactgc agaggaatgt tatagttgtc
     1081 aatactgtgg caaggtcttt catcagcttt cacactttaa aagtcatttc acactccata
     1141 ctggagagaa gccttacaaa tgcaatgagt gtcacagatc ttttccccac tatgtattct
     1201 ttagaaggca taagaaaaat cattctctac agaaatcaca caaatgcaaa gagtgtggta
     1261 agtccttttt tatattatca catcttaaaa ctcattacag aatccatact ggtgagaagc
     1321 cttacaaatg tacaaaatgt gacaaactct ttacacagta ctcacatctt cgaagacatc
     1381 aaagaattta tactggaaag aaactttata gatgtgaggt atgtgacaaa tggtttactc
     1441 tgtcctcaag tctcagcaga catcagaaaa tccatactga agcaaaaact tacaaatgca
     1501 aggactgtga catattcttt aaccactact caagtcttag aagacatcag aaggttcata
     1561 ctggagaaag acattatacg tgtaaacagt gtggcaagtc ttttactagg ggctcaactc
     1621 ttagagtaca tcagagaatt catactggag aaaaacctta caaatgtagt gaatgtgaca
     1681 aatcatttac ccaggcctca caacttagaa cacatcagag agttcatact ggagagaaac
     1741 cttatgtatg taaggaatgt ggcaaatcac ttactacatg tgcaattctt agagcacatc
     1801 agaaaattca tactggagaa aaaccttaca aatgtatgga atgtgacaga tcctatatcc
     1861 aatactcaca tcttaaaaga catcagaaag ttcatactgg agagaaacat aaaattgtaa
     1921 ataatgtgac atagcattca tccagtattc tctctgtgtt caaatcccaa cattatacat
     1981 aatagaaata tatgcatgag agacagggga aagcctttaa taaagtttta aatcttacaa
     2041 tttatcacaa agtttgtcaa aataaattcc aaatgtgatt atatgaaaa
//
