LOCUS       NM_146183               1165 bp    mRNA    linear   ROD 03-JUN-2024
DEFINITION  Mus musculus zinc finger protein 428 (Zfp428), transcript variant
            3, mRNA.
ACCESSION   NM_146183
VERSION     NM_146183.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1165)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CX204922.1, CX200381.1 and AK139174.1.
            
            On May 24, 2009 this sequence version replaced NM_146183.1.
            
            Transcript Variant: This variant (3) differs in the 5' UTR and uses
            an alternate in-frame splice junction at the 5' end of the last
            exon compared to variant 1. The resulting isoform (b) has the same
            N- and C-termini but is shorter compared to isoform a.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK139174.1, BC096675.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849379
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-67                CX204922.1         1-67
            68-270              CX200381.1         1-203
            271-1165            AK139174.1         2-896
FEATURES             Location/Qualifiers
     source          1..1165
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 11.18 cM"
     gene            1..1165
                     /gene="Zfp428"
                     /gene_synonym="2410005H09Rik; Znf428"
                     /note="zinc finger protein 428"
                     /db_xref="GeneID:232969"
                     /db_xref="MGI:MGI:1916463"
     exon            1..350
                     /gene="Zfp428"
                     /gene_synonym="2410005H09Rik; Znf428"
                     /inference="alignment:Splign:2.1.0"
     exon            351..558
                     /gene="Zfp428"
                     /gene_synonym="2410005H09Rik; Znf428"
                     /inference="alignment:Splign:2.1.0"
     CDS             483..1013
                     /gene="Zfp428"
                     /gene_synonym="2410005H09Rik; Znf428"
                     /note="isoform b is encoded by transcript variant 3"
                     /codon_start=1
                     /product="zinc finger protein 428 isoform b"
                     /protein_id="NP_666295.2"
                     /db_xref="CCDS:CCDS20952.1"
                     /db_xref="GeneID:232969"
                     /db_xref="MGI:MGI:1916463"
                     /translation="MTETREPTETGGYASLEEDDEDLSPEPDSEEEEEEEEEETTDDP
                     EYDPGYKVKQRIGGGRGGPSRRAPRATQPAGPPAQPCQLCGRSALGEAPPGTPPCRLC
                     CPATATQEAPGPESRALGEEEEEPSRTGETRPAGRDGDEDEEEGGTYHCTECEDSFDN
                     LGELHGHFMLHARGEV"
     exon            559..1165
                     /gene="Zfp428"
                     /gene_synonym="2410005H09Rik; Znf428"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1131..1136
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zfp428"
                     /gene_synonym="2410005H09Rik; Znf428"
                     /note="hexamer: AATAAA"
     polyA_site      1150
                     /gene="Zfp428"
                     /gene_synonym="2410005H09Rik; Znf428"
                     /note="major polyA site"
ORIGIN      
        1 ccaaggcatc cactatttat aaggcgcgtt cgctctaccg cgcacgcacg cacgcgcgat
       61 tcttaaagct tcttcaccct tcgggccgca gactgtacca agtctagcgg ggccgtgagc
      121 ggcagagccc gccacccccg ccggcgtgag ctctacagcc ttcgccatcc tctgagcccc
      181 tcttcccatc gacctccggg aatggtccat ctgaccgcgc acgcgcccct cgctcgcccc
      241 tcgctcgttc gcccgttcgc tcgcccgctc gcctagcctc ccgaaacgca ggcgcagtgc
      301 ccgggcgtgc agccgccacc gccgagcctg atccggggcc gccggcgtcg cacccctctc
      361 tacctgccaa catcctgtat tagaggagct tgtggctgga ggtgtgaccg cgggagagct
      421 ggccggggag ggaccctgct cagtcgctgc tctgctcctg tctcttgtcc cctccccccg
      481 ccatgacaga gacccgtgaa cccactgaga ctggaggcta cgccagcttg gaggaagatg
      541 atgaagacct ttccccagag cccgactctg aggaggagga ggaggaagag gaagaggaga
      601 ccactgatga ccccgaatat gaccctggct ataaggtgaa acagcgaata ggtgggggca
      661 ggggtggccc gtcccgccga gccccccgag caacccagcc tgctggccca cctgcacagc
      721 cttgccagct ctgcggccga tcagcgctgg gagaggcccc gccgggtacc ccaccttgcc
      781 gactctgctg ccctgcaaca gcaacccaag aagccccagg ccctgagagc agggctcttg
      841 gagaggaaga ggaggaaccg tctcgcactg gggaaactcg gccagcaggg cgggatgggg
      901 acgaagacga ggaggagggg ggcacctacc actgtacgga gtgtgaggac tcctttgaca
      961 acctcgggga gctgcatggc cacttcatgc tgcatgcccg gggcgaggtg taggcggggc
     1021 caccagagtg ctggtagaag ggtgagggga gcagggctga ggaagctgga atcagcgctg
     1081 ggggtcccgc ccatctgtgt tgtcttagct gtagataatg tgaagggctg aataaaagcc
     1141 agattctaca tgttggctcc gcata
//
