LOCUS       NM_172740               3334 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus zinc finger protein 420 (Zfp420), transcript variant
            1, mRNA.
ACCESSION   NM_172740 XM_001481070 XM_001481071
VERSION     NM_172740.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3334)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 3334)
  AUTHORS   Cui,W., Dai,X., Marcho,C., Han,Z., Zhang,K., Tremblay,K.D. and
            Mager,J.
  TITLE     Towards Functional Annotation of the Preimplantation Transcriptome:
            An RNAi Screen in Mammalian Embryos
  JOURNAL   Sci Rep 6, 37396 (2016)
   PUBMED   27869233
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 3334)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
REFERENCE   4  (bases 1 to 3334)
  AUTHORS   Yokoyama,S., Ito,Y., Ueno-Kudoh,H., Shimizu,H., Uchibe,K.,
            Albini,S., Mitsuoka,K., Miyaki,S., Kiso,M., Nagai,A., Hikata,T.,
            Osada,T., Fukuda,N., Yamashita,S., Harada,D., Mezzano,V., Kasai,M.,
            Puri,P.L., Hayashizaki,Y., Okado,H., Hashimoto,M. and Asahara,H.
  TITLE     A systems approach reveals that the myogenesis genome network is
            regulated by the transcriptional repressor RP58
  JOURNAL   Dev Cell 17 (6), 836-848 (2009)
   PUBMED   20059953
REFERENCE   5  (bases 1 to 3334)
  AUTHORS   Agata,Y., Matsuda,E. and Shimizu,A.
  TITLE     Rapid and efficient cloning of cDNAs encoding Kruppel-like zinc
            finger proteins by degenerate PCR
  JOURNAL   Gene 213 (1-2), 55-64 (1998)
   PUBMED   9630514
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC149283.2.
            
            On or before Jul 31, 2009 this sequence version replaced
            XM_001481070.1, XM_001481071.1, NM_172740.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC055817.1, AK045821.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384, SAMN00849385
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-115               AC149283.2         216383-216497       c
            116-168             AC149283.2         215408-215460       c
            169-210             AC149283.2         203543-203584       c
            211-3334            AC149283.2         199174-202297       c
FEATURES             Location/Qualifiers
     source          1..3334
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 17.26 cM"
     gene            1..3334
                     /gene="Zfp420"
                     /gene_synonym="B230119D13; B230312I18Rik; mszf59-1;
                     mszf70"
                     /note="zinc finger protein 420"
                     /db_xref="GeneID:233058"
                     /db_xref="MGI:MGI:2444666"
     exon            1..115
                     /gene="Zfp420"
                     /gene_synonym="B230119D13; B230312I18Rik; mszf59-1;
                     mszf70"
                     /inference="alignment:Splign:2.1.0"
     exon            116..168
                     /gene="Zfp420"
                     /gene_synonym="B230119D13; B230312I18Rik; mszf59-1;
                     mszf70"
                     /inference="alignment:Splign:2.1.0"
     exon            169..210
                     /gene="Zfp420"
                     /gene_synonym="B230119D13; B230312I18Rik; mszf59-1;
                     mszf70"
                     /inference="alignment:Splign:2.1.0"
     exon            211..3334
                     /gene="Zfp420"
                     /gene_synonym="B230119D13; B230312I18Rik; mszf59-1;
                     mszf70"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3306..3311
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zfp420"
                     /gene_synonym="B230119D13; B230312I18Rik; mszf59-1;
                     mszf70"
                     /note="hexamer: AATAAA"
     polyA_site      3328
                     /gene="Zfp420"
                     /gene_synonym="B230119D13; B230312I18Rik; mszf59-1;
                     mszf70"
                     /note="major polyA site"
ORIGIN      
        1 ggggtacttg cgtcacgaga gggttgtgtc tggaggatct cctaagcatc ccatagagca
       61 ggctgcctgt agtggagccc ggcgcaggag gcgggaccct gagcttccct cggagtacaa
      121 cacagaagag gaaaaatggc cattgtccat ctagaaggga agtttgagaa atcagggatg
      181 tttaatgatg ttgcttttga cttctctaag gcttgccctc tgaacaagga cttgtcttca
      241 aaatagcaca ccaagggatc agaattgtgt cagtgggaaa tgagtgagac attcgaaaac
      301 tgtataccta agactaattc tagaaaatat ttggaagtca gagttagaga gggaacgaga
      361 aaatccgaag gaatattaca agcaagagat ggtaacacat gacacaatgt ccgttttctg
      421 cccaggcacg cgcctacctc agcatccacg gggttactct acagagaagc cctataaatg
      481 tgaggagtgt ggcaaagcct tcaggcgagc ctcacacctg tcccagcatc agagtattca
      541 cactggtgag aaaccctatg aatgtaagca gtgtgggaag gcctttagtc gtgattccca
      601 gctaagtctt catcagagac ttcacaccgg tgagaaaccc tacacatgca aggaatgtgg
      661 aaaggctttc actcaaagct cacaacttat tttgcaccat agaattcata cgggtgagaa
      721 accatacaag tgtgaagcct gtgggaaggc ctttattcga agctcacaac tcagccgcca
      781 tcaaaaggtc cacactggag agaaaccctt tgaatgtaaa gagtgtggga aggccttcac
      841 ccagaactca caacttactc tgcaccagag actgcacact ggtgagaagc tctacgactg
      901 taaggagtgt aggaaggtct ttactcagct ctcgcagctt attctccata gaagaatcca
      961 cactggcgag aaaccctatg aatgcaatga gtgtgggaaa gctttcattt gtggctcaca
     1021 gctctcgcag caccggaaaa tccacaatgg agaaaagcca tatgaatgta aggagtgtgg
     1081 gaaggctttt attcgaggct cactacttat gcaacatcaa aggattcaca ctggtgaaaa
     1141 accctataaa tgtgacgagt gtggaaaggc ttttatccgt ggttcccaac tcactcaaca
     1201 tcagagggtt catactaacg aaaagcctta cgaatgtaaa gaatgtggaa agaccttcag
     1261 tcatggctca caactaactc aacatcagag aatccatact ggtgagaagc cctatcaatg
     1321 taaggagtgt gggaaagcct ttaatcgcgg gtcactcctt actcgacatc agaggattca
     1381 caccggtgaa aaaccctaca aatgtaaaga atgtggaaaa aattttagcc ggggctcaga
     1441 acttactcag catgagagaa tccacacggg tgagaagccc tatgagtgta aggaatgtgg
     1501 gaagtccttt atccgtggct cccagctcac tcagcatcaa agaatccaca caggtgaaaa
     1561 accgtatgag tgtaaagaat gccgaatggc ctttacccag agttcacatc tttcccagca
     1621 tcagagactt cataccggtg agaaacccta cgtgtgtagc gaatgtggga aggcctttgc
     1681 acgtggattg ttgctcatac agcatcagag aattcatact ggcgagaagc cgtatcagtg
     1741 tagggaatgt gggaaggctt ttatccgcag ttcacagctc actcaacatc agcgaactca
     1801 cactggagag aaaccttatg aatgtaggga atgtgggaag gcctttggtc atggctctca
     1861 acttactctg catcagaggg tccacacagg tgagaagccc tatgaatgta aggagtgtag
     1921 aaaggccttc actcagagtt cacatctttc tcggcaccaa cgagttcata ctggcgagaa
     1981 accgtatcag tgtaaagaat gtgaaaaggc ctttacacgt gagtctcaac taatgcgaca
     2041 tcagagaatt catatccgtg gcaaatcttt ggactgtaag gaatgccgaa tagactttaa
     2101 tcatcattcg caaattttta tatgagttaa tttatactct gctaattaat gtagctttcc
     2161 ctggtcatac attatcagtg aagagttctt acaaatgtga atatgggact gtgaattcag
     2221 catttgagaa tttatgtagg agaatagaaa tgctgatgta atccacatag gaaaaccatg
     2281 tgtttacttg tttacattgt attacatttt agcaaattaa agtagggaag tgaatccgtt
     2341 gctgtgatat agaaggtctt tagcagagaa aatttctcta tcacattaca caggtcctat
     2401 cagttggttt cctttgttac atttgttatg actaacctgg ctttcatgta atcatttgta
     2461 atatagatct aagattcttc taaagatcat gttttaacat gtaaaagcac ttggatcagc
     2521 tcctttcata tcataaatat tagctgctat tttcattatt tgcatgaaag gagggaacgg
     2581 ataagcatta tcattaagaa atctttcgtt attatttggg aggctttata tactatcatc
     2641 agtgtgagaa agctttcatt cagatcttat ttattataga agggaattta tactaaaaag
     2701 aagccttggt atcagtgggt tattgaatac tatggttaca gaactgattt gtcacagagt
     2761 cccaaaactt acatgtttca ctatctctaa cttcaactca agaatattac ttatacatga
     2821 taactaagca ctcaagataa acctaggaaa tgaaaaagac ttgaatgtgt agttttgtga
     2881 actaatctga aagtacaaaa tagacaactt agaataaaaa acaacacatg atcttgtatc
     2941 agagatcggt gttcgaccca gttttcatct ctttttcatc ataaaaccta ggcaagacaa
     3001 aaacctccca tacacaaaaa tttagtctcc attgcagatc aacaagacga aaatggtgtc
     3061 tgtatgacta gaacacttta aaaaatccat cctctctgct tctttccctt cttaacactg
     3121 tagacagtga ggcagagcac agacggcctc gtgaggggtt gggagtggtc tctgggtgtt
     3181 actgatggct gagtctgcaa gcctgttgat ttgtaaacag tcatggtaac tctgctttgc
     3241 ctctgtgctt tacttaaaag taaagtagcc ctcagactgg ttgatgctct ccgagatcac
     3301 tgaataataa aacttccctt aaggacaaga aaga
//
