LOCUS       NM_009556               1816 bp    mRNA    linear   ROD 29-AUG-2023
DEFINITION  Mus musculus zinc finger protein 42 (Zfp42), mRNA.
ACCESSION   NM_009556
VERSION     NM_009556.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1816)
  AUTHORS   Qu F, Li W, Xu J, Zhang R, Ke J, Ren X, Meng X, Qin L, Zhang J, Lu
            F, Zhou X, Luo X, Zhang Z, Wang M, Wu G, Pei D, Chen J, Cui G, Suo
            S and Peng G.
  TITLE     Three-dimensional molecular architecture of mouse organogenesis
  JOURNAL   Nat Commun 14 (1), 4599 (2023)
   PUBMED   37524711
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1816)
  AUTHORS   Kim J, Muraoka M, Okada H, Toyoda A, Ajima R and Saga Y.
  TITLE     The RNA helicase DDX6 controls early mouse embryogenesis by
            repressing aberrant inhibition of BMP signaling through
            miRNA-mediated gene silencing
  JOURNAL   PLoS Genet 18 (10), e1009967 (2022)
   PUBMED   36197846
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1816)
  AUTHORS   Ringel AR, Szabo Q, Chiariello AM, Chudzik K, Schopflin R, Rothe P,
            Mattei AL, Zehnder T, Harnett D, Laupert V, Bianco S, Hetzel S,
            Glaser J, Phan MHQ, Schindler M, Ibrahim DM, Paliou C, Esposito A,
            Prada-Medina CA, Haas SA, Giere P, Vingron M, Wittler L, Meissner
            A, Nicodemi M, Cavalli G, Bantignies F, Mundlos S and Robson MI.
  TITLE     Repression and 3D-restructuring resolves regulatory conflicts in
            evolutionarily rearranged genomes
  JOURNAL   Cell 185 (20), 3689-3704 (2022)
   PUBMED   36179666
REFERENCE   4  (bases 1 to 1816)
  AUTHORS   Allegre N, Chauveau S, Dennis C, Renaud Y, Meistermann D, Estrella
            LV, Pouchin P, Cohen-Tannoudji M, David L and Chazaud C.
  TITLE     NANOG initiates epiblast fate through the coordination of
            pluripotency genes expression
  JOURNAL   Nat Commun 13 (1), 3550 (2022)
   PUBMED   35729116
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 1816)
  AUTHORS   Samanta MK, Gayen S, Harris C, Maclary E, Murata-Nakamura Y,
            Malcore RM, Porter RS, Garay PM, Vallianatos CN, Samollow PB, Iwase
            S and Kalantry S.
  TITLE     Activation of Xist by an evolutionarily conserved function of KDM5C
            demethylase
  JOURNAL   Nat Commun 13 (1), 2602 (2022)
   PUBMED   35545632
  REMARK    Publication Status: Online-Only
REFERENCE   6  (bases 1 to 1816)
  AUTHORS   Lyu MS, Park DJ, Rhee SG and Kozak CA.
  TITLE     Genetic mapping of the human and mouse phospholipase C genes
  JOURNAL   Mamm Genome 7 (7), 501-504 (1996)
   PUBMED   8672127
REFERENCE   7  (bases 1 to 1816)
  AUTHORS   Rosfjord E and Rizzino A.
  TITLE     The octamer motif present in the Rex-1 promoter binds Oct-1 and
            Oct-3 expressed by EC cells and ES cells
  JOURNAL   Biochem Biophys Res Commun 203 (3), 1795-1802 (1994)
   PUBMED   7945330
REFERENCE   8  (bases 1 to 1816)
  AUTHORS   Hosler BA, Rogers MB, Kozak CA and Gudas LJ.
  TITLE     An octamer motif contributes to the expression of the retinoic
            acid-regulated zinc finger gene Rex-1 (Zfp-42) in F9
            teratocarcinoma cells
  JOURNAL   Mol Cell Biol 13 (5), 2919-2928 (1993)
   PUBMED   8474450
REFERENCE   9  (bases 1 to 1816)
  AUTHORS   Rogers MB, Hosler BA and Gudas LJ.
  TITLE     Specific expression of a retinoic acid-regulated, zinc-finger gene,
            Rex-1, in preimplantation embryos, trophoblast and spermatocytes
  JOURNAL   Development 113 (3), 815-824 (1991)
   PUBMED   1821852
REFERENCE   10 (bases 1 to 1816)
  AUTHORS   Hosler BA, LaRosa GJ, Grippo JF and Gudas LJ.
  TITLE     Expression of REX-1, a gene containing zinc finger motifs, is
            rapidly reduced by retinoic acid in F9 teratocarcinoma cells
  JOURNAL   Mol Cell Biol 9 (12), 5623-5629 (1989)
   PUBMED   2511439
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK141232.1, BC053399.1 and BC064785.1.
            
            [WARNING] On Oct 11, 2023 this sequence was replaced by
            NM_009556.4.
            
            On Sep 7, 2007 this sequence version replaced NM_009556.2.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC053399.1, M28382.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164134 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-29                AK141232.1         27-55
            30-33               BC053399.1         3-6
            34-388              AK141232.1         60-414
            389-441             BC053399.1         362-414
            442-523             BC064785.1         474-555
            524-551             BC053399.1         497-524
            552-976             BC064785.1         584-1008
            977-1588            BC053399.1         950-1561
            1589-1801           BC064785.1         1620-1832
            1802-1816           BC064785.1         1837-1851
FEATURES             Location/Qualifiers
     source          1..1816
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 23.89 cM"
     gene            1..1816
                     /gene="Zfp42"
                     /gene_synonym="Rex-1; Rex1; Zfp-42"
                     /note="zinc finger protein 42"
                     /db_xref="GeneID:22702"
                     /db_xref="MGI:MGI:99187"
     exon            1..169
                     /gene="Zfp42"
                     /gene_synonym="Rex-1; Rex1; Zfp-42"
                     /inference="alignment:Splign:2.1.0"
     exon            170..253
                     /gene="Zfp42"
                     /gene_synonym="Rex-1; Rex1; Zfp-42"
                     /inference="alignment:Splign:2.1.0"
     exon            254..331
                     /gene="Zfp42"
                     /gene_synonym="Rex-1; Rex1; Zfp-42"
                     /inference="alignment:Splign:2.1.0"
     exon            332..1801
                     /gene="Zfp42"
                     /gene_synonym="Rex-1; Rex1; Zfp-42"
                     /inference="alignment:Splign:2.1.0"
     CDS             406..1272
                     /gene="Zfp42"
                     /gene_synonym="Rex-1; Rex1; Zfp-42"
                     /note="mREX-1; reduced expression protein 1"
                     /codon_start=1
                     /product="zinc finger protein 42"
                     /protein_id="NP_033582.2"
                     /db_xref="CCDS:CCDS22267.1"
                     /db_xref="GeneID:22702"
                     /db_xref="MGI:MGI:99187"
                     /translation="MNEQKMNEQMKKTAKTSGQKGPGGRALDRLTLKQDEARPVQNTR
                     VEAPRVTYTIRDESEISPETEEDGFPDGYLECIIRGEFSEPILEEDFLFKSFESLEEV
                     EQNLSRQVLEASSLLESSLEYMTKGTKQEKREVTQETPPLRVGASSLLAGGPAEKPEG
                     GVYCGVLSMLECPQAGCKKKLRDKTALRKHMLVHGPRRHVCAECGKAFTESSKLKRHF
                     LVHTGEKPYQCTFEGCGKRFSLDFNLRTHIRIHTGERRFVCPFDGCEKSFIQSNNQKI
                     HILTHAKAGKKC"
     regulatory      1790..1795
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zfp42"
                     /gene_synonym="Rex-1; Rex1; Zfp-42"
     polyA_site      1801
                     /gene="Zfp42"
                     /gene_synonym="Rex-1; Rex1; Zfp-42"
ORIGIN      
        1 ccggaacaga gttcgtccat ctaaaaaggg aggggtccaa ggagctgaac tcctagccgc
       61 ctagatttcc actgtggctc tgggtacgag tggcagtttc ttcttgggat ttcagaaagg
      121 aaaccaagga ggaaataggt agagcgcatc gcatcgctgt gggcattaga gaaatggact
      181 aagagctggg acacgtggca aaagaagata gtcttcttct ctcaatagag tgagtgtgca
      241 gtgcagccag cagctcctgc acacagaaga aagcaggatc gcctcactgt gctgcctcca
      301 agtgttgtcc ccaaatacca ctgaccaaaa agcaggtgtt tgcggatcag tgccccctgg
      361 aagtgagtca taggcattgt tcaagaagga agcagctaag acaacatgaa tgaacaaaaa
      421 atgaatgaac aaatgaagaa aacggcaaag acaagtggcc agaaagggcc gggcggaaga
      481 gccctcgaca gactgaccct aaagcaagac gaggcaaggc cagtccagaa taccagagtg
      541 gaagctcccc gtgtaacata caccatccgg gatgaaagtg agattagccc cgagactgag
      601 gaagatggct tccctgacgg atacctagag tgcatcatac gaggtgagtt ttccgaaccc
      661 attctggaag aggatttcct ttttaaatcc ttcgaaagct tggaggaagt ggagcaaaac
      721 ctttctcgcc aggttctgga agcgagttcc cttctcgagt cttctttgga gtacatgaca
      781 aaggggacga agcaagagaa gagagaggtc acgcaagaga cgcctccgct gagggttggg
      841 gcgagctcat tacttgcagg cggccctgca gagaagccag agggcggtgt gtactgtggt
      901 gtcttatcga tgctggagtg tcctcaagcc gggtgcaaga agaagctgag ggataaaacc
      961 gccctgagga agcacatgct tgtccacggg ccccggcggc acgtgtgtgc agagtgtggc
     1021 aaagccttca cggagagctc gaaactaaag cgacattttc tggtgcacac cggagagaag
     1081 ccgtatcagt gcacgttcga aggctgtggg aagcgcttct ccctggattt caacttgcgc
     1141 acccatatcc gcatccacac cggggagagg cgctttgtgt gtccttttga tggctgcgag
     1201 aagagcttta ttcagtcaaa taaccagaag attcacatcc taacccacgc aaaggccggg
     1261 aagaaatgct gaaggtggag acagattgtc ctcaggctgg gtagtcttaa tgacagaggc
     1321 actggggata cacgcattat gtacagattg ttatttgtag ggatagattc tatggctaaa
     1381 ataattttgc aactcttcat tatacagttt taaggcctct tttggtattc catggtatag
     1441 ttccaacagg aaagtcaatg gtgaaagcag tttcaaaagc ataaccctta ctatatgtgc
     1501 tattgaaggg gatggggact tttgcatacg tcggaaaatc agttattttt aactatgcag
     1561 ttcctaattg cctagctttt acctttagaa atatgcttca tggtaaattt gataatccta
     1621 aagaatggcc aactttggca gtagtcaaca aatgaataca tatttctaaa ttttatgttt
     1681 tgatttttgt ttttctcatt gtaccaaact atattaatca tagttaaatg tgaatagtta
     1741 caaaaaagtt gatccatctg aagattttag atgtttcaaa ataaaaggaa ataaaacact
     1801 aaaaaaaaaa aaaaaa
//
