LOCUS       NM_001416214            8631 bp    mRNA    linear   ROD 07-MAY-2024
DEFINITION  Mus musculus zinc finger protein 41 (Zfp41), transcript variant 3,
            mRNA.
ACCESSION   NM_001416214 XM_006520895
VERSION     NM_001416214.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 8631)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8631)
  AUTHORS   Wiese,C.B., Ireland,S., Fleming,N.L., Yu,J., Valerius,M.T.,
            Georgas,K., Chiu,H.S., Brennan,J., Armstrong,J., Little,M.H.,
            McMahon,A.P. and Southard-Smith,E.M.
  TITLE     A genome-wide screen to identify transcription factors expressed in
            pelvic Ganglia of the lower urinary tract
  JOURNAL   Front Neurosci 6, 130 (2012)
   PUBMED   22988430
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 8631)
  AUTHORS   Nishimura,M., Yokoi,N., Miki,T., Horikawa,Y., Yoshioka,H.,
            Takeda,J., Ohara,O. and Seino,S.
  TITLE     Construction of a multi-functional cDNA library specific for mouse
            pancreatic islets and its application to microarray
  JOURNAL   DNA Res 11 (5), 315-323 (2004)
   PUBMED   15747579
REFERENCE   4  (bases 1 to 8631)
  AUTHORS   Noce,T., Fujiwara,Y., Sezaki,M., Fujimoto,H. and Higashinakagawa,T.
  TITLE     Expression of a mouse zinc finger protein gene in both
            spermatocytes and oocytes during meiosis
  JOURNAL   Dev Biol 153 (2), 356-367 (1992)
   PUBMED   1397691
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC119264.8.
            
            On Jan 23, 2023 this sequence version replaced XM_006520895.5.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR17253012.7302361.1,
                                           SRR17784651.985571.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849383
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            NMD candidate :: translation inferred from conservation
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-706               AC119264.8         38151-38856         c
            707-2354            AC119264.8         35858-37505         c
            2355-8631           AC119264.8         25722-31998         c
FEATURES             Location/Qualifiers
     source          1..8631
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="15"
                     /map="15 34.62 cM"
     gene            1..8631
                     /gene="Zfp41"
                     /gene_synonym="CTfin92; Zfp-41"
                     /note="zinc finger protein 41"
                     /db_xref="GeneID:22701"
                     /db_xref="MGI:MGI:99186"
     exon            1..706
                     /gene="Zfp41"
                     /gene_synonym="CTfin92; Zfp-41"
                     /inference="alignment:Splign:2.1.0"
     exon            707..2354
                     /gene="Zfp41"
                     /gene_synonym="CTfin92; Zfp-41"
                     /inference="alignment:Splign:2.1.0"
     CDS             864..1460
                     /gene="Zfp41"
                     /gene_synonym="CTfin92; Zfp-41"
                     /codon_start=1
                     /product="zinc finger protein 41"
                     /protein_id="NP_001403143.1"
                     /db_xref="GeneID:22701"
                     /db_xref="MGI:MGI:99186"
                     /translation="MEKPATRKKKSQAPKEEAGAQKATVKGEKTSKGKKATKKPRKPR
                     RPRKEPVLSPEDEAHIFDAFDASFKDDFEGVPVFVPFQRKKPYECGECGRIFKHKTDH
                     IRHQRVHTGEKPFKCDQCGKTFRHSSDVTKHQRIHTGEKPFKCGECGKAFNCGSNLLK
                     HQKTHTGEKPYGCEECGKSFAYSSCLIRHRKRHPRKKH"
     exon            2355..8631
                     /gene="Zfp41"
                     /gene_synonym="CTfin92; Zfp-41"
                     /inference="alignment:Splign:2.1.0"
     regulatory      4083..4088
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zfp41"
                     /gene_synonym="CTfin92; Zfp-41"
                     /note="hexamer: AGTAAA"
     polyA_site      4099
                     /gene="Zfp41"
                     /gene_synonym="CTfin92; Zfp-41"
                     /note="major polyA site"
     regulatory      8614..8619
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zfp41"
                     /gene_synonym="CTfin92; Zfp-41"
                     /note="hexamer: TATAAA"
     polyA_site      8631
                     /gene="Zfp41"
                     /gene_synonym="CTfin92; Zfp-41"
ORIGIN      
        1 accagagggg cgggcgcctt taggcgcggg agtggcgggc tcaagtgggc attgttaacg
       61 gtcgcccgcc cgccggtcag cctgcttacg gccacgttcc gccggcgtct gtgctcggca
      121 cccatcaggt actctctgcg tgtgtgcacg gtagccccga ccgggcgaag gccggcttct
      181 gagtcgtttc tctgtggacc acctcggcgg tgttgcagag gtccttggag gcggggaagg
      241 tgggccgggc tacctagcga agccccttgt tgctggatgc attgagcgcc ttatcctgcc
      301 ggctccagca gctccttgat ggacctgagt ccctaggtca gcggaattca actaagttgc
      361 ctgaatcact cgcacctact cctgtgcaca ggcctgtgaa gagagggggc aataagctaa
      421 gtcgctgggg tcttctctgg ttttaatgac tatttaagtt ttcagtgagg atggtccttg
      481 gtgagcagac acagacacct gggtcccgct tgtcattcct ctcaccagag tgatggtgtt
      541 tgaattggta ctgagtgatg ctgcagacag ggactctcag gtgtctcctg agctgtccca
      601 caaaagacaa acactttcag atgctgacat agagcaaaca gtcacctagc cgcctggatc
      661 ttggactctg aatccggata agaattttat ctgctgggtt agatataagc aagacgaccg
      721 tggttctgtc tgcttgatgc agcttcgtac gcaggagctg tccctgacag cgaagtccca
      781 gagaaggagc caggcagcca ctgtctgaaa accctcagcc ttccctggcc tccagggggg
      841 tttcctgctt cctaagagca gcaatggaaa agcctgcaac taggaaaaag aagagtcagg
      901 ccccaaagga ggaggcaggt gcgcaaaagg ccactgtcaa gggagagaaa acatcaaagg
      961 ggaaaaaggc aaccaagaag ccaagaaagc cccgcagacc ccgaaaagaa cctgtcctga
     1021 gccccgagga cgaagcacat atctttgatg ccttcgatgc ctcgtttaaa gatgactttg
     1081 agggtgtccc cgtgtttgtc ccttttcaga ggaagaagcc ctatgagtgt ggtgaatgtg
     1141 gacggatctt taaacacaag acagatcaca ttcgccacca gagagttcac actggagaga
     1201 agccctttaa gtgtgaccag tgtgggaaga ccttcaggca cagctcagat gtcaccaaac
     1261 atcaaagaat tcacaccggt gagaagccct ttaaatgtgg ggagtgtgga aaagccttca
     1321 actgtggttc taaccttcta aaacaccaga aaacgcacac tggagagaaa ccttatggct
     1381 gtgaggagtg tggaaaatcc ttcgcctaca gctcctgcct catccggcat cggaagcgtc
     1441 atccgaggaa gaagcactga gcagggcggt ctacagctat ggatccttgt caaacacctg
     1501 atgatggtcc agaggtctta cgcagtatgc tcatccagcc acccatctgt cattgagagg
     1561 aaaatctacc catcagacat gagagcccac agaggctttc tgcccttcga gtcttcactt
     1621 agtagtaaca tggtgcttcc cggagcttcc tgaagctcca gccattttcc agactacttt
     1681 atgttactca gggccatctt tggaacagtt ttgggtcgct gagaactttg tagagctaaa
     1741 gagacacccc tgttggcaag ggccactgcc ttcctttgct gcctctgtct gcaccaacca
     1801 cggtgctttt gtctcttctc ttgaagactt ctgactctgt atgctcagcc ccatgctgtc
     1861 tgctagggcg aggaaccctg aggtggatga caggcagcat tctgaccaac tctgaggaca
     1921 gcaccaagtc ctgcttgctc atctctgtgc agctgacttc agtgatccta gagtttcact
     1981 cttctggctg aaaccacagt ctttgagctc aacccttggg cctagagctg ggttacactg
     2041 ctttctcttg tcccagccac atcgtagaca agtagcctgg atccatccaa agcctcagca
     2101 gaccctggca ccctggcata gtggcaggtt tcttaggcta ggccttgtag ctccagggtg
     2161 ccatcagtag cttctgccca ctgcaccttg aaaaacaact gtggccccac cccacagcag
     2221 cctgccattc cggtcaattc cacttcctgc tggtcagcag ggcaagacca cgtgactctg
     2281 tctactgtct gccccacgat gatgctgtgt gaggtctgtg ttctaaagac agcaagtgac
     2341 tgctgaccag gagggctgct agagcagatc tctccagtaa gaagctcaga gaactcggga
     2401 gtcagtgtct acctctacag agcacagcag agacactggg catgctccag ggaggctttc
     2461 gtcgccacag aacccactgg caacaggaag gctgtaggtg ggcgagctca gggaggcctt
     2521 ttggacgccg tgtggtgact acaggtcact ttcacttgtt cccaccctca agtttaagat
     2581 ggccacatca cagcattcat gagcaaccat tagttctggc tcactgaagc ctgccgaaga
     2641 gttcccggca ccagctctct acatcagtga aagacactgt gaacagccac ctgggaacaa
     2701 atgaaatgtt cagaaccttc tagatgtctt aagatgtgtc ctgggacaac taagaatact
     2761 ccagcaaagt attgggattc taattataga agcatgctca gctgcaggca gagatgtctt
     2821 agaagtccca ggcagtccac ttattagctg ccatgtccag tgggccttgt cctgcagagt
     2881 tccgagcagc ccaactgctg ctgagcctca cttagaacag agagcactac cagggcctga
     2941 caaccagcaa gtgaatgcca gctcggagct gtactaagat ccattccttc agctccctcc
     3001 cagccaagag agaaggcaga agccacctca aggagagtta gagggagctc tgggctgggt
     3061 ccaggactct tctgtttgag gagagcagtg ggttagacct gactagctgc ctccttctgt
     3121 ttctgaaagt ctgtagctcc agagcacgtg cagactcctt tcctcctgac cttggatctg
     3181 tcatcaagac actgacttcc tgtgccaatg agttgggaca tcaggatgcc ctaaaaagga
     3241 aggcagaact ggggctcaag gaagaaaggc tgtgtaccct gactcaaggg acagatgctc
     3301 tgtgccttct aggggaggct caggggaatg gggtcacctc tggtgtggac cccagctaca
     3361 gtgcagacaa gaaaactggc ctatgtgcca catttacctt taggccaagc aatggtgccc
     3421 accttcagct taccctttcc agtccctagt gcctgtggag ttgggtgttt gctttctcct
     3481 ggttccttct caaggaagac aagtggattg acctcctgac tcagatcctg taggactaat
     3541 gcttgcactg ggcagctccc agaaacacct aagtgtgtct gtttccctgc atctgggcct
     3601 gcagtcactt ggctttggac ctgcagaggg tccccagcac ccgcatactg gtagcactca
     3661 gctggcttgt ccacatctca cctcagccac ctcatgatct ggtggaacct cctctttctt
     3721 gtttctggct ggtgcagaca cccgtgtgtc ctaataccca tctgtacact gcagtgtgtg
     3781 gtgcattcct cttaaacagc tgcagccatg gcttgttgta ttgtagacgc tgtccccagt
     3841 ctggtgtttc tgtttgacat ttgtgaatgc ttacgtccgt gtaataccct tggtgctgtg
     3901 tcagtgttgt gcacattgga ctagacattc tgctttgttg tgcacttggt ggcttccttc
     3961 ctatgtgact cctctgctcc atggacagtg gcactgatgc tccacgttgc cttccagttg
     4021 ctgccatggt gctgtgagca gatgctgttg gtgctgctcc cggacatcta ttttctcata
     4081 aaagtaaatg tgtttccaac tcgcttcctg tgctctgttg ggttccctac agtgtggaca
     4141 aatgtcctca aggaagccac cagctttctt tactggagac agctgcaaga ccagggtccc
     4201 agctggtcac tgctacttgg gaatgtctag gatacttcca gtgaccaagc tcatgagaat
     4261 ataactcgta attgaaaaaa agtcatcact gctgtaccat gggtgagggt ggaggtttat
     4321 aaaagcaaga catcgcctgc ctttgtgacc ccagataatg ggatgccagg ttacggttta
     4381 gttagttgtt cagtacctgt agtggggacc gtgagggaaa cctgagaagt gcccattcat
     4441 tcttcattta gggcagctgt tctcaacaag gggtgatcct gcaagggaca ctgatcagtg
     4501 tctggggaca gttttgtttg gaggatctgg tgagaagaag caaggattta gctaaacctc
     4561 acagtacaca ggtcaacccc agcccggcaa caggagcact ggtgccgcgt tactcaggaa
     4621 gccagggact ggactgagtt aggcttgcag gcagcagaag cactagagca accccgctct
     4681 ttcctgatcc attctcccac agcctcaaga ctaaccttaa aatgaagtaa aaatgtcact
     4741 tgagcttgaa agtcctagag tagccaggat aaaaatagta accccccctc ccccaagtct
     4801 caaatatggg gctcgagggg tggagttgga ggtgtaccga gtgataaaac acacacttag
     4861 cacccttgag atcctttgtt ccagatgccg tccacagcat tgtcaaagag catctggaga
     4921 ggtggctctc ccagaggaca caagtttgag tctcagtacc cacgtggcag ctcacaacca
     4981 tctgtaactc cagttccagg agctctgact cctcctcctt ctctccacag gcccaggcat
     5041 gtaagtagta cacagacata ccaataggca aaaagtagat ccctcccatt gagaagcacc
     5101 agtgtatcct ggacactcgg aatgacagcc acgtctggag agtgattgta gttaggctgt
     5161 tctgtccctt gctcatcttg ttccatcctc cccttgctta ctatctcacc ctgcctgctc
     5221 tggtccatag ggctgctagc ccttcccaca ccctgagacc tttgcacaca ctatttcttt
     5281 taactattac ctccctgtca cctctccctc ctttgacagc acctccttta ggttatcttg
     5341 gctatcaagc ctcaactctc caggctactg cctgtggggc atccaccaga gaagactact
     5401 ggggcacaag tataagccaa cagaacgtct ttattagcca gccagcaact atcctatgtg
     5461 tttaggatgc ccctgtagcc tcaaaccttt ctcagggtca gctgttaagc acagaaacca
     5521 tatcttgggt tgacatacct cagttaagaa cagttagcca gaagcagaac tgccgaagcc
     5581 aaaaagcaag gttagtacat ttagggactt tcccagagct atggactttg ctgtactagg
     5641 tctttggggg tttattgggg tgggggtggg gtgtatgttt tgttttgttt gtccagtggt
     5701 gatgtctgtg tgctgagttt gatgacctga atggtacttt caatatgaag tcagtataga
     5761 tagtgctaag gaccattaat tttatcaaat tgttacataa ttggccatat agtttaagac
     5821 acagggcccc accattaata cagttagaat aagcaaggcc aggcagtgct gatggtgcga
     5881 gagctgaaga aacccctttt tatgctaggt atacatcttg gtactcagta gccacttctc
     5941 tttgactcca gtccctggaa tataagctcc caacaaccct gactcagtca ctcccactca
     6001 gaagtgtaca gccaggacca tctacttgtt atgacttctt tggcttctgt aacttgctta
     6061 tgcagatatt caaggcctat tttgaggccg cccctgacta cctaaccttg gcagagcagc
     6121 acagctcctg gcttgcttgt gcagacaccc agtgtgggtt ttcccattac aaatcctgcc
     6181 ctcacccctt tgcacagcag tcttagagac tggtgtcctt ctagtggttt caataaattt
     6241 aactaactat aatctggatt gggtctgtgg tcttttcccg gggtgtcttg agctcatcca
     6301 ggatccctgg gaaatcccag actcggaatc agggatcttg agattggtcc ctaaacggag
     6361 acaagtccca ggtgaacttg gaggcctagg gggaccccag actgtgatca ccacaaatct
     6421 ggtaaatgcc caacactcag gaaacagagg caggaagctg tctgaatttc aggccagcct
     6481 ggtctacaga ggaatttcca ggacagccag ggctacacag aaaagccctc tctcgggggt
     6541 ggcagggagt aaaatttaca gccagtgcac atgtgaaacc cagaccaatt ggtgagttgt
     6601 tctgttctgc aagtcccaac atctggggag attggacaag atcatagcct gtttccagga
     6661 ctatcctcct ggttctggta tatgggtcaa ggtggccacg tgtctgtctg ctgtcctctg
     6721 actgtgtgga cattctgtct ttttaagttg tttgcttttg tctgatggat ttgtttacta
     6781 atgtacttat aagttttgtt tcagacatgg gagccaggcc acaaccacca ccgccactgg
     6841 cttactctgt ctctgcccct ctcattggct caatgagcct gctgtttaag tctcatgggt
     6901 ttctcacaga tggttgtctc tgcgctttct ttattctctg cttgctggca tcactggatt
     6961 cagttttgtg gggattcagg tgtctttggg atatagataa tattgaaata gtgctctatg
     7021 ctgtcctatt attaaaaacc gggctctggg gttgcattat gcctggcttg cctgacccaa
     7081 gcatgaaggt ttataagttt tccccagaat ctctgtctta ggtcagacag gcctcctgct
     7141 tctgtcagcg aaaggaaaaa ccaaacagcc caggaaaaga tgtcaggtgc tttaaaacag
     7201 ctaaaaagta gactctccag tgggagttac agctgcttac cgcttctcct ttcctcggct
     7261 ttccttagct ctctcagact tttgtcaaaa tacaaacgta tctcaagact tgtaagacta
     7321 ttatataaac tttgtgcctt aaaatttgta agtttattgg atatggttaa aaatctgaga
     7381 acacaaaagc aacctgatgc caacattttc tgggttccca cgggtgtggt ttttattgtt
     7441 ctctgtttag tggcctctgg gttacagatc cgtacactat tctgcaactt ggtgacctta
     7501 taaggaaaaa aatacctgtg aagcttttca ggttgtctgc ctccatctgc agacacacaa
     7561 actggttatg aacccctgtg tttaaaatct ctcaccttta atctcagcac ttaggaggca
     7621 gaaacaggtg gatctctgag cttgaggcca gcctggtcta cagagtgagt tccaggacag
     7681 ccaggactat acagagagac catgttctga aaaaccaaaa aataaataaa aataaaatat
     7741 ctcactagta actacagata tgcctgctta aaatattcag agctgggctt gttaaaagtt
     7801 gatactcctt caaaaacaag atggacaagg tcactagacc ttcacgccag tatccagtca
     7861 atcctctcag ctagctgtat gcaattagga cctaaatgca tgagacctca aggttttctg
     7921 aaaaaactag ggtgtgcaag ctaaaacctg tatcctgggt aaaggctgca cccagttgtc
     7981 tctcatccct taggaaaaat ttcttgcaac aaatggtatt ttattggtta ctattatgtc
     8041 tcccttaaaa tttttaatta aattttttaa tcaaatttta atcaaaaatt atataaaaat
     8101 taaaatggtc aaattaatta cagatatcta gctctgactt cttcctcctt ttttggttct
     8161 tgttaggaaa aagcaaatgt tcccccattc aaggtcatgc atattcagag ttcttgacaa
     8221 aatgtaaact tcatttctca ggatctgtaa gactattgtg ggggctaggg gggatgacat
     8281 ggtctggggt gctgtaaaat tccaagcaaa aaattctgta atggtcaaga tttacaaatt
     8341 cctagggtta taaaagtcta ctcaggttaa cagaaactga ctttttaaag tatgcctaac
     8401 cacttatgtc tttcttaact gtgttcaata ctaattttaa aataacatgt ttggtaacta
     8461 agatatattt gataataagg tttattaact ccttaggact attcaggcta gcggaacctg
     8521 acttaaagat gtaggtctag tcttgttttt gtctttgctg actttgttaa atgttagcta
     8581 tttggatgaa ttgagtcata ataaaaacat tgatataaaa aaatgaaaaa a
//
