LOCUS       NM_199029               4229 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus zinc finger protein 395 (Zfp395), mRNA.
ACCESSION   NM_199029 XM_354825
VERSION     NM_199029.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4229)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 4229)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
REFERENCE   3  (bases 1 to 4229)
  AUTHORS   Shang,Y., Doan,C.N., Arnold,T.D., Lee,S., Tang,A.A., Reichardt,L.F.
            and Huang,E.J.
  TITLE     Transcriptional corepressors HIPK1 and HIPK2 control angiogenesis
            via TGF-beta-TAK1-dependent mechanism
  JOURNAL   PLoS Biol 11 (4), e1001527 (2013)
   PUBMED   23565059
REFERENCE   4  (bases 1 to 4229)
  AUTHORS   Yamamoto,M., Watt,C.D., Schmidt,R.J., Kuscuoglu,U., Miesfeld,R.L.
            and Goldhamer,D.J.
  TITLE     Cloning and characterization of a novel MyoD enhancer-binding
            factor
  JOURNAL   Mech Dev 124 (9-10), 715-728 (2007)
   PUBMED   17693064
  REMARK    GeneRIF: Highly related cDNAs Pbf and Gig1 interact with required
            element MyoD core enhancer; they represents a new family of DNA
            binding proteins that may be components of transciptional pathways
            that regulate a number of developmental and physiologic processes.
REFERENCE   5  (bases 1 to 4229)
  AUTHORS   Carninci,P., Waki,K., Shiraki,T., Konno,H., Shibata,K., Itoh,M.,
            Aizawa,K., Arakawa,T., Ishii,Y., Sasaki,D., Bono,H., Kondo,S.,
            Sugahara,Y., Saito,R., Osato,N., Fukuda,S., Sato,K., Watahiki,A.,
            Hirozane-Kishikawa,T., Nakamura,M., Shibata,Y., Yasunishi,A.,
            Kikuchi,N., Yoshiki,A., Kusakabe,M., Gustincich,S., Beisel,K.,
            Pavan,W., Aidinis,V., Nakagawara,A., Held,W.A., Iwata,H., Kono,T.,
            Nakauchi,H., Lyons,P., Wells,C., Hume,D.A., Fagiolini,M.,
            Hensch,T.K., Brinkmeier,M., Camper,S., Hirota,J., Mombaerts,P.,
            Muramatsu,M., Okazaki,Y., Kawai,J. and Hayashizaki,Y.
  TITLE     Targeting a complex transcriptome: the construction of the mouse
            full-length cDNA encyclopedia
  JOURNAL   Genome Res 13 (6B), 1273-1289 (2003)
   PUBMED   12819125
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY117447.1, BY780785.1, AI425685.1, AC158983.2 and CF737135.1.
            
            On Nov 30, 2007 this sequence version replaced NM_199029.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data because no single transcript was available
            for the full length of the gene. The extent of this transcript is
            supported by transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK155538.1, SRR7345562.1204437.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-180               BY117447.1         1-180
            181-407             BY780785.1         131-357
            408-869             AI425685.1         1-462               c
            870-906             AC158983.2         142944-142980       c
            907-1517            CF737135.1         1-611
            1518-4229           AC158983.2         135518-138229       c
FEATURES             Location/Qualifiers
     source          1..4229
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="14"
                     /map="14 34.32 cM"
     gene            1..4229
                     /gene="Zfp395"
                     /gene_synonym="Gm910"
                     /note="zinc finger protein 395"
                     /db_xref="GeneID:380912"
                     /db_xref="MGI:MGI:2682318"
     exon            1..80
                     /gene="Zfp395"
                     /gene_synonym="Gm910"
                     /inference="alignment:Splign:2.1.0"
     exon            81..345
                     /gene="Zfp395"
                     /gene_synonym="Gm910"
                     /inference="alignment:Splign:2.1.0"
     CDS             103..1629
                     /gene="Zfp395"
                     /gene_synonym="Gm910"
                     /note="papillomavirus regulatory factor"
                     /codon_start=1
                     /product="zinc finger protein 395"
                     /protein_id="NP_950194.2"
                     /db_xref="CCDS:CCDS49522.1"
                     /db_xref="GeneID:380912"
                     /db_xref="MGI:MGI:2682318"
                     /translation="MLSRRLGKRSLLGARVLGPSAAEVPSGATLPLEPQIEVPEGAMS
                     LSPLTSKDPVCQEQPKELLKALGTSGHPQVAFQPGQKVCVWYGGQECKGLVEQHSWAE
                     DKVTVRLLDQKLQIRCKVEEVWLAELQGSASHVPALEPGAQVPAYRPVSRNIDVPKRK
                     SDAVEMDEMMAAMVLTSLSCSPVVQSPPGAEPIFSVSRAACGDLWKESGDVSDSGSSG
                     HWSGSSGSSTPSPPHPQASPKYLGDAFGSPQTDHGFETDPDPFLLDEPAPRKRRNSVK
                     VMYKCLWPSCGKVLRSIVGIKRHVKALHLGDTVDSDQFKREEDFYYTEMQMKEESAQA
                     VAAPPAPGTPMGEPASTSRVTSPSLAALSLPPAKVQSSGPEHPGLESSLPSVALSKSA
                     PGSFWHIQADHAYQALPSFQIPVSPHIYTSISWAAAPTTTSSLSPVRSRSLSFSEPQQ
                     PPPTVKSHLIVTSPPRAQSSTRKARGEAKKCRKVYGIEHRDQWCTACRWKKACQRFLD
                     "
     exon            346..578
                     /gene="Zfp395"
                     /gene_synonym="Gm910"
                     /inference="alignment:Splign:2.1.0"
     exon            579..688
                     /gene="Zfp395"
                     /gene_synonym="Gm910"
                     /inference="alignment:Splign:2.1.0"
     exon            689..918
                     /gene="Zfp395"
                     /gene_synonym="Gm910"
                     /inference="alignment:Splign:2.1.0"
     exon            919..1019
                     /gene="Zfp395"
                     /gene_synonym="Gm910"
                     /inference="alignment:Splign:2.1.0"
     exon            1020..1320
                     /gene="Zfp395"
                     /gene_synonym="Gm910"
                     /inference="alignment:Splign:2.1.0"
     exon            1321..1413
                     /gene="Zfp395"
                     /gene_synonym="Gm910"
                     /inference="alignment:Splign:2.1.0"
     exon            1414..1517
                     /gene="Zfp395"
                     /gene_synonym="Gm910"
                     /inference="alignment:Splign:2.1.0"
     exon            1518..4229
                     /gene="Zfp395"
                     /gene_synonym="Gm910"
                     /inference="alignment:Splign:2.1.0"
     regulatory      4208..4213
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zfp395"
                     /gene_synonym="Gm910"
                     /note="hexamer: AATAAA"
     polyA_site      4229
                     /gene="Zfp395"
                     /gene_synonym="Gm910"
                     /note="major polyA site"
ORIGIN      
        1 agtgcagggg ccgcgccggt ggcgggcagg gccgcggccg ctgcagggag ccgagctgtc
       61 tgggtcagtg gccggccgag caggcggagc agagtatcca gcatgctgtc ccgacgcctt
      121 ggtaagcgct ccctcttggg agcccgggtg ttgggaccta gtgccgctga agtaccatca
      181 ggggccaccc tgcctctgga gccacagata gaagtgccgg aaggagccat gtccctgtcc
      241 ccactcacct ctaaggaccc tgtgtgccag gagcagccca aggagctcct caaagctctg
      301 ggaacctcag gccacccaca ggtggccttt cagcctggac agaaggtctg tgtgtggtat
      361 ggaggtcagg agtgcaaggg cctggtggag cagcacagct gggccgagga caaggtgacc
      421 gtccggctgc tggaccagaa gttacagatt cgctgtaaag tggaagaggt gtggctggcg
      481 gagctgcagg gtagcgcatc ccacgtgcca gccttggagc ccggagccca ggtgccagcc
      541 tacagaccgg tgtctaggaa catcgacgtc ccgaagagga agtcggatgc ggtggagatg
      601 gacgagatga tggccgccat ggtgctgacg tctctgtctt gcagtcccgt tgtgcagagt
      661 cctcctgggg ctgagcccat cttctctgtt tcccgtgcag cctgcggtga cctgtggaag
      721 gagagcggtg atgtttcaga cagcggcagc agcgggcact ggagcgggag cagtggcagc
      781 tctaccccct cgccgcccca tccgcaggcc agccccaagt acctggggga tgcctttggg
      841 tctccccaaa ctgatcatgg ctttgagact gatcctgacc ctttcctgtt agacgaacca
      901 gccccacgaa agaggaggaa ctccgtgaag gtgatgtaca agtgcctgtg gcccagctgt
      961 ggcaaagttc tccgttcaat tgtgggcatc aaacgacacg tcaaagccct ccacctgggg
     1021 gacactgttg actctgatca gttcaagcgg gaggaagact tttactacac agagatgcag
     1081 atgaaagagg aatctgctca ggctgtggct gctccccctg cccctgggac acctatgggc
     1141 gagccagcgt ccacctccag ggtgaccagc ccgtcccttg ctgctctttc attgcctcca
     1201 gccaaggtcc agtcatctgg cccagaacac cctggcctgg agtcttctct gccctcagtt
     1261 gcactcagca agtcagctcc tggctctttc tggcacattc aggctgacca tgcatatcag
     1321 gctctgccat ccttccagat ccctgtttcc ccccacatct ataccagcat cagctgggct
     1381 gctgccccta ccaccacctc ctccctctct ccggtccgaa gccgctctct cagcttcagc
     1441 gagccccagc agccgccacc tacagtgaag tctcacctga ttgtcacctc cccaccccgt
     1501 gctcagagca gcaccaggaa agcccgtgga gaggccaaga agtgccgtaa ggtgtacggc
     1561 atcgagcacc gggaccagtg gtgcacagcc tgccggtgga agaaggcctg ccagcgcttc
     1621 ctggactgag cctgcctcac tagccccgct tctcaccctg cctggcagcc gggaagcctc
     1681 caggcctgca gccatcagca gaacacaggg agatgatgtg gcgtggatgt gggcagctgg
     1741 ggctccattg gctaagatag aacacttaaa aacacttttc tcccccttgt tgggagtgct
     1801 ttatttttta aaagcaaacc taaatgaaac tatttttccc cttaaaatag gagagagcca
     1861 aaattgacca agggtattct gcagcgaacc ggagaccaaa gagttacccc tacccctacc
     1921 ccattccacc ctctctggga ctacatatgc atcaagagta ggacaggatg ctgccttgcc
     1981 tggttttgtt ctgagctggt gaatcctttg ctctttcagc tattctagag tggcctgtga
     2041 gcaaatgaac ttctctctct ctctctctct ctctctcttt ctttctctct ctctctccct
     2101 tccttccttc cttccttcct tcccccctct ttctctctct ccctccctcc ctccctctcc
     2161 ctctcccccc cctctttctc tctctctctt tctttctttc tttctttctt tctttctttc
     2221 tttctttctt tctttctttc tttctttctt ttctttcaaa aaaaaaaaag aagaactttc
     2281 tggcaggtag atggccaccc agggaatgtg gcaggaccct aagaagagca ggcagctgtg
     2341 cttgttgaga tatgaggaca gaaaagggac acccttttat ggtgtcaact tttggatctg
     2401 ggtttccccc agatgttggg ttgcatgcca ataaacatgt ggcttcttct caaagcctgt
     2461 cttcaaaaaa gctgaggcaa aatgctaata ttaattcagc ctggcctcga aacactgtcc
     2521 tgagcacccg tcaactctga gaggaagtgt ggagagtctc catccaactc tgctcctact
     2581 gagtaaagtc cccttccctc cagagtgtca cagagacact agaatgtcag gtgctcttgt
     2641 ctgatgtaga agtctttgat gaggaagcct tctttccctt ggggtctctg gaagatccta
     2701 gcagactttg cctgtgggcc tgctcagcat gacttccagg accccactgt tctggactga
     2761 catcccaggt gtcacaggct cagggagtgg caccaggtca cctctccagg gactgagcat
     2821 cattggctca ttgtcatggg gagctccctc ctgaccacgg aggctccact ggtggtgcca
     2881 catgggaaac atctacttct cagtctaagg cacactaagt actagtagca agcctgtgag
     2941 cctaggagac tgtgtgtgtg aggtaaaggg tgtagtggtg gcctgggctg ctgatggagg
     3001 ggaagcacca gtatctaggt gtctttggta ggggtgtatt tttattacac agagtttttg
     3061 aacatatagg gaccccacca agaggctctc ctctcccctt cttaatccca gtatagactg
     3121 agtgtccact tcagcaaagg tgttttcatc ccagccttgg tttggagctt gcagacgtaa
     3181 ctgaatataa tttcctccat ttgcagcatg gttcccatgc cattggcgca ccagacagaa
     3241 aagggagaga gaaaagacag gaactgatga gatagtttga aagctgaagg agttctgagt
     3301 ttgtttagtt ctttattcca tctctgtgcg gcctcccgag cctacgttcg ttccctcctc
     3361 ccttatggtg ttggcctcct gcctgctgtc atgtgtcccc ccttttgctc cccctcccca
     3421 tcctgatgct ttcatgttgg ttcctgacac atggtctggc tttgggtttg aagggcaagg
     3481 gtggctgtga accaccccca cccagccgtc aggcccgctt cgtcgtcatc tctatctccc
     3541 tgctccctgg ccctgagggt ttggaatctg accgggtgaa ggcaccaccg gcgagctttt
     3601 gaaagcaaca gggcctagcc tgcaaacagt tatcttggga aactgtccag ccacgtttcc
     3661 attactcgga gctctcggtt accttcagac atggtgccgt gttgggagca acctcagtgg
     3721 gtttgcacta cactcactcc gtgctgcaag tccagggata ctgtctgtgg ccactgaagt
     3781 ctcaggtgca gatgggttct cccgggaacc cagggttgga tccataaggc tttaatctgg
     3841 ccctgaaagc agtgttgccg cttcagacag tactgcgagc aatggctgcc ttgtcggagt
     3901 gagtgtgtag ctggacacct tagaggaccc tatgaaattg gatatggaga ctgatttggt
     3961 gggaaaaaac ctgttacttt ccagtcaccc caggttctga ctttacctgg ggcaaaaaca
     4021 aaccacaaaa agggagaatc tcatctgtga atttgtctta tcggcgcttc tccccagccc
     4081 cgcccctgcc ccgccccgcc ccagccccgc tgtcttccaa gtattatttt tactgttaag
     4141 atttttttta aatgtgaaat gaaatgtaat gtttttacag caatgatatg aaatatattt
     4201 tataaggaat aaaatggtac attgtctga
//
