LOCUS       NM_001373887            2890 bp    mRNA    linear   ROD 09-JUN-2024
DEFINITION  Mus musculus zinc finger protein 385C (Zfp385c), transcript variant
            1, mRNA.
ACCESSION   NM_001373887 XM_006533495
VERSION     NM_001373887.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2890)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2890)
  AUTHORS   Diez-Roux,G., Banfi,S., Sultan,M., Geffers,L., Anand,S., Rozado,D.,
            Magen,A., Canidio,E., Pagani,M., Peluso,I., Lin-Marq,N., Koch,M.,
            Bilio,M., Cantiello,I., Verde,R., De Masi,C., Bianchi,S.A.,
            Cicchini,J., Perroud,E., Mehmeti,S., Dagand,E., Schrinner,S.,
            Nurnberger,A., Schmidt,K., Metz,K., Zwingmann,C., Brieske,N.,
            Springer,C., Hernandez,A.M., Herzog,S., Grabbe,F., Sieverding,C.,
            Fischer,B., Schrader,K., Brockmeyer,M., Dettmer,S., Helbig,C.,
            Alunni,V., Battaini,M.A., Mura,C., Henrichsen,C.N.,
            Garcia-Lopez,R., Echevarria,D., Puelles,E., Garcia-Calero,E.,
            Kruse,S., Uhr,M., Kauck,C., Feng,G., Milyaev,N., Ong,C.K.,
            Kumar,L., Lam,M., Semple,C.A., Gyenesei,A., Mundlos,S., Radelof,U.,
            Lehrach,H., Sarmientos,P., Reymond,A., Davidson,D.R., Dolle,P.,
            Antonarakis,S.E., Yaspo,M.L., Martinez,S., Baldock,R.A., Eichele,G.
            and Ballabio,A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL591469.9.
            
            On Sep 4, 2019 this sequence version replaced XM_006533495.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7974084.878.1, SRR7345562.43579.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164134, SAMN01164136
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-66                AL591469.9         103316-103381       c
            67-318              AL591469.9         68290-68541         c
            319-467             AL591469.9         48659-48807         c
            468-578             AL591469.9         45562-45672         c
            579-744             AL591469.9         43609-43774         c
            745-1056            AL591469.9         41403-41714         c
            1057-1253           AL591469.9         40806-41002         c
            1254-1364           AL591469.9         40453-40563         c
            1365-2890           AL591469.9         38458-39983         c
FEATURES             Location/Qualifiers
     source          1..2890
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 63.47 cM"
     gene            1..2890
                     /gene="Zfp385c"
                     /gene_synonym="A930006D11Rik; Znf385c"
                     /note="zinc finger protein 385C"
                     /db_xref="GeneID:278304"
                     /db_xref="MGI:MGI:3608347"
     exon            1..66
                     /gene="Zfp385c"
                     /gene_synonym="A930006D11Rik; Znf385c"
                     /inference="alignment:Splign:2.1.0"
     exon            67..318
                     /gene="Zfp385c"
                     /gene_synonym="A930006D11Rik; Znf385c"
                     /inference="alignment:Splign:2.1.0"
     CDS             69..1601
                     /gene="Zfp385c"
                     /gene_synonym="A930006D11Rik; Znf385c"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /codon_start=1
                     /product="zinc finger protein 385C isoform 1"
                     /protein_id="NP_001360816.1"
                     /db_xref="GeneID:278304"
                     /db_xref="MGI:MGI:3608347"
                     /translation="MKRPLSPPPSGEKEPPTTAASECPPHSPESSKPKRERKRPSYTL
                     CDVCNIQLNSAAQAQVHCGGRAHQRRLRQLSLGKTSTGPAGPASGSPSPLLASLTLPA
                     RPLQPPLDLKHLLAFHLNGTTPLSLFPNFSTMDPVQKAVISHTFGVPSPLKKKLFISC
                     NICHLRFNSANQAEAHYKGHRHARKLKAVEAAKSKQRPRNPTTNGTVVSSASPPASGS
                     PGTPQSKGPASPPLGPSLQLPPTPDPSAGDPVHSAGDPVHSELCDAAASSSSSSCPPC
                     SPDPSREAPGPEPAEGAVGSGVNGEGRGEKGRLYCPTCKVTVNSASQLQAHNTGAKHR
                     WMVEGHQGAPRRGRGRPVSRGGTGHKTKRVIGNRGGRQGPSPPFHCALCQLHVNSETQ
                     LKQHMSSRRHKDRLAGKPPKSSSQHNKLQKHTALAVSVLKSKLALQKQLTKTLAARFL
                     PGPLPTTAAAICALPGPLTLRPAATAAATLFPAPVLGPALFRSPAGAVRPAAGPILFA
                     PY"
     exon            319..467
                     /gene="Zfp385c"
                     /gene_synonym="A930006D11Rik; Znf385c"
                     /inference="alignment:Splign:2.1.0"
     exon            468..578
                     /gene="Zfp385c"
                     /gene_synonym="A930006D11Rik; Znf385c"
                     /inference="alignment:Splign:2.1.0"
     exon            579..744
                     /gene="Zfp385c"
                     /gene_synonym="A930006D11Rik; Znf385c"
                     /inference="alignment:Splign:2.1.0"
     exon            745..1056
                     /gene="Zfp385c"
                     /gene_synonym="A930006D11Rik; Znf385c"
                     /inference="alignment:Splign:2.1.0"
     exon            1057..1253
                     /gene="Zfp385c"
                     /gene_synonym="A930006D11Rik; Znf385c"
                     /inference="alignment:Splign:2.1.0"
     exon            1254..1364
                     /gene="Zfp385c"
                     /gene_synonym="A930006D11Rik; Znf385c"
                     /inference="alignment:Splign:2.1.0"
     exon            1365..2890
                     /gene="Zfp385c"
                     /gene_synonym="A930006D11Rik; Znf385c"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2869..2874
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zfp385c"
                     /gene_synonym="A930006D11Rik; Znf385c"
                     /note="hexamer: AATAAA"
     polyA_site      2890
                     /gene="Zfp385c"
                     /gene_synonym="A930006D11Rik; Znf385c"
                     /note="major polyA site"
ORIGIN      
        1 agagcttttg cgctgcaaac caggcgagag caggtggcca ccgccggctg catctctttc
       61 ctgcaggtat gaagcggcca ctgagcccac ccccctcagg tgagaaggag ccccctacaa
      121 ctgcagcatc tgagtgcccc cctcactctc cagaatcatc gaagcctaag cgggaaagga
      181 aacgaccctc ctacacgctc tgcgatgtct gcaacatcca gctgaactct gcagcccagg
      241 cccaggtgca ttgtggggga cgcgcccacc agcgaaggct tcggcagctc agcctgggca
      301 agacctccac ggggccagca ggtccggcct ccggctcccc cagccccttg ttggcctccc
      361 tgactttgcc cgcccggcct ctgcaacccc cgctggacct gaagcatttg ctcgccttcc
      421 acctcaatgg caccaccccg ctcagtctct tccccaactt cagcacgatg gacccagtcc
      481 agaaagctgt catcagccac acatttgggg tcccttcccc tctgaagaag aagctgttca
      541 tctcctgtaa catctgtcat ctgcggttca actcagcgaa ccaggctgag gctcattaca
      601 agggccacag acacgccaga aaactcaagg ctgtggaagc tgccaagagc aagcagaggc
      661 ctcgaaaccc gaccacaaac gggacagtgg tgtcttcagc ctcacctcca gccagtggaa
      721 gccctggaac ccctcagagc aaaggtcctg catcccctcc tcttggccct tcacttcagc
      781 tcccgccgac cccggaccca tcagccggag accccgtcca ctcagccgga gaccccgtcc
      841 actccgaact ttgtgatgct gctgcttcgt cttcctcctc ttcctgccca ccctgctccc
      901 cggatcccag cagggaagca ccagggcctg agccagcaga aggggccgtg ggaagtggag
      961 tgaatgggga gggcaggggc gagaagggac gcctctactg ccctacctgt aaagtgacag
     1021 tgaactccgc ctctcagctt caggctcaca acacaggagc taagcacaga tggatggtgg
     1081 aaggtcatca aggggctccc cgaaggggcc ggggccgtcc tgtgtcccga ggagggactg
     1141 gacacaagac caagagagtg ataggaaatc gtgggggccg gcagggaccc agccctcctt
     1201 tccattgtgc cctctgtcag ctccatgtca attcagagac ccagctcaag cagcacatga
     1261 gcagccggag gcacaaagac cggctggctg ggaagccccc caagtcctcc agccagcata
     1321 acaagctgca gaagcacaca gcactggctg tgagtgttct caagtctaaa ttggccttgc
     1381 agaagcaact caccaagacg ctggcagccc gcttcctgcc tggtccgctg cccaccacag
     1441 ctgctgccat ctgtgccctg ccagggcccc tgaccctccg gcctgctgca acagcagctg
     1501 ctaccctctt cccagctcct gtcctgggcc cagctctgtt tcgttctcca gcaggagctg
     1561 tccgccctgc tgcaggaccc atcctttttg ctccctatta gtggactcag aatggccaca
     1621 tcctatctct tccagtcaga cacttgtctc cacatcccac agagactgcc ttttgcagtt
     1681 tccgggttcc cacccaacct gggtagctgc ccttcactca gactggggtt ctccagtccc
     1741 ctggctctga ggaccaccac taccctcctt tcctgggcca gccctaggct gccctgcatc
     1801 tatgatttaa caaatcccaa agatctatgc aaaaaccaca gccccagtct catggtgctc
     1861 tcatacccag accccaacta gagacgtaca cagagctgac agcattttag ctcccaaggg
     1921 ccagcctctc ctgccatgtt ctagagcggt ctggacaatc actagagaca gggatctcaa
     1981 actgaagtgg gctggaacct atcaggcata tttaccatgg ggtagccagg tatggtggtg
     2041 cattcctgca atcctagggc ctggattacg agttcaaagt cagtttgagc catatagcta
     2101 gacactgtct caaacaccaa aacaaccaca agtagactac agggtatgta tggcaaaggg
     2161 ccatagagat aagaggcccc aaagttctta aaaaatgtac tgtgaaagtg aggcagagtt
     2221 gagatgacgc gccatctgct cgtgggggtg gggcttgaag ggaaaagtgg tgttcaggct
     2281 gggcctgact gtgtcatcct ggctggtctg ggactgtatg ctcaggctgg caaactcaaa
     2341 aaatctacct gcctctgcct cttaagtaac ggaactaaag gcacacacca ccctgcctgg
     2401 tctggctttg acacaatagc cctggctgtc ctggaactca ctttgtagac caggctggcc
     2461 tcgaactcag aaatctgcct gcctctgcct cccgagtgct gggactaaag gcgtgcacca
     2521 ccacacccgg cactacagct cttcttatct tagcctttca gtggtttctc ttgaacccca
     2581 actctaaagg ggctctgggt ctccctcagc ctagggactc tccattccac actgggtctg
     2641 gccatcccaa gtgtggcgtt tcgggctggt acatggtcca gtaaaccctc aagatcaact
     2701 ttcatgtcac caaagccagt gccattcccc cattcgacat gggatttcac caggatccac
     2761 ctatatcccc ctttttttga aagatatttc caatgggaca agaaaagggg taggggacgg
     2821 gaaacttttt gataatagca gttgtggttt tattgtgtcc aacacatcaa taaatgaact
     2881 tcaagcctga
//
