LOCUS       NM_178723               3217 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus zinc finger protein 385B (Zfp385b), transcript variant
            1, mRNA.
ACCESSION   NM_178723 XM_912298 XM_922318 XM_922322 XM_922325 XM_922330
VERSION     NM_178723.6
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3217)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 3217)
  AUTHORS   Spielmann,M., Kakar,N., Tayebi,N., Leettola,C., Nurnberg,G.,
            Sowada,N., Lupianez,D.G., Harabula,I., Flottmann,R., Horn,D.,
            Chan,W.L., Wittler,L., Yilmaz,R., Altmuller,J., Thiele,H., van
            Bokhoven,H., Schwartz,C.E., Nurnberg,P., Bowie,J.U., Ahmad,J.,
            Kubisch,C., Mundlos,S. and Borck,G.
  TITLE     Exome sequencing and CRISPR/Cas genome editing identify mutations
            of ZAK as a cause of limb defects in humans and mice
  JOURNAL   Genome Res 26 (2), 183-191 (2016)
   PUBMED   26755636
REFERENCE   3  (bases 1 to 3217)
  AUTHORS   Blackshaw,S., Harpavat,S., Trimarchi,J., Cai,L., Huang,H.,
            Kuo,W.P., Weber,G., Lee,K., Fraioli,R.E., Cho,S.H., Yung,R.,
            Asch,E., Ohno-Machado,L., Wong,W.H. and Cepko,C.L.
  TITLE     Genomic analysis of mouse retinal development
  JOURNAL   PLoS Biol 2 (9), E247 (2004)
   PUBMED   15226823
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK046798.1, AK149352.1, BC132352.1, AK050293.1 and AI851853.1.
            
            On Jan 12, 2008 this sequence version replaced NM_178723.5.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK046798.1, AK149352.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-166               AK046798.1         2-167
            167-246             AK149352.1         148-227
            247-421             AK046798.1         248-422
            422-2029            BC132352.1         1-1608
            2030-3032           AK050293.1         1521-2523
            3033-3217           AI851853.1         1-185               c
FEATURES             Location/Qualifiers
     source          1..3217
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 45.94 cM"
     gene            1..3217
                     /gene="Zfp385b"
                     /gene_synonym="B830010L13Rik; C130013B13Rik; Zfp533;
                     Znf385b"
                     /note="zinc finger protein 385B"
                     /db_xref="GeneID:241494"
                     /db_xref="MGI:MGI:2444734"
     exon            1..265
                     /gene="Zfp385b"
                     /gene_synonym="B830010L13Rik; C130013B13Rik; Zfp533;
                     Znf385b"
                     /inference="alignment:Splign:2.1.0"
     exon            266..413
                     /gene="Zfp385b"
                     /gene_synonym="B830010L13Rik; C130013B13Rik; Zfp533;
                     Znf385b"
                     /inference="alignment:Splign:2.1.0"
     exon            414..749
                     /gene="Zfp385b"
                     /gene_synonym="B830010L13Rik; C130013B13Rik; Zfp533;
                     Znf385b"
                     /inference="alignment:Splign:2.1.0"
     CDS             461..1909
                     /gene="Zfp385b"
                     /gene_synonym="B830010L13Rik; C130013B13Rik; Zfp533;
                     Znf385b"
                     /note="isoform 1 is encoded by transcript variant 1; zinc
                     finger protein 533"
                     /codon_start=1
                     /product="zinc finger protein 385B isoform 1"
                     /protein_id="NP_848838.2"
                     /db_xref="CCDS:CCDS16164.1"
                     /db_xref="GeneID:241494"
                     /db_xref="MGI:MGI:2444734"
                     /translation="MNMATFLRGFEEKGLKNDRPGDQFSKEKKKILFSFCEVCNIQLN
                     SAAQAQVHYDGKSHRKRVKQLSDGQPPPPVQGSVPLLAGPCPCPGPGPNTSTGSACHT
                     TTLPALVRTPTLMMQPSLDIKPFMSFPVDSSSAVGLFPNFNTMDPVQKAVINHTFGVS
                     IPPKKKQVISCNVCQLRFNSDSQAEAHYKGSKHAKKVKALEATKNKPKMVPSKDSAKA
                     NPSCSIRPGTGDSSDKSEDKGKIKATSSSQPSGSEGGSFLLKSGTTPLPLGAIASPSK
                     STNGAPGSVAESEEEKAKKLLYCSLCKVAVNSLSQLEAHNTGSKHKTMVEARNGAGPI
                     KSYPRPGSRLKVQNGSKGSGLQNKMFHCEICDVHVNSEIQLKQHISSRRHKDRVAGKP
                     LKPKYSPYNKLQRSPSILAAKLAFQKDLMKPLAPTFLSSPLAAAAVSSALSLPPRPSA
                     SLFQAAAIPPALLRPGHGPIRATPASILFAPY"
     exon            750..892
                     /gene="Zfp385b"
                     /gene_synonym="B830010L13Rik; C130013B13Rik; Zfp533;
                     Znf385b"
                     /inference="alignment:Splign:2.1.0"
     exon            893..1003
                     /gene="Zfp385b"
                     /gene_synonym="B830010L13Rik; C130013B13Rik; Zfp533;
                     Znf385b"
                     /inference="alignment:Splign:2.1.0"
     exon            1004..1166
                     /gene="Zfp385b"
                     /gene_synonym="B830010L13Rik; C130013B13Rik; Zfp533;
                     Znf385b"
                     /inference="alignment:Splign:2.1.0"
     exon            1167..1412
                     /gene="Zfp385b"
                     /gene_synonym="B830010L13Rik; C130013B13Rik; Zfp533;
                     Znf385b"
                     /inference="alignment:Splign:2.1.0"
     exon            1413..1591
                     /gene="Zfp385b"
                     /gene_synonym="B830010L13Rik; C130013B13Rik; Zfp533;
                     Znf385b"
                     /inference="alignment:Splign:2.1.0"
     exon            1592..1693
                     /gene="Zfp385b"
                     /gene_synonym="B830010L13Rik; C130013B13Rik; Zfp533;
                     Znf385b"
                     /inference="alignment:Splign:2.1.0"
     exon            1694..3212
                     /gene="Zfp385b"
                     /gene_synonym="B830010L13Rik; C130013B13Rik; Zfp533;
                     Znf385b"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2154..2159
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zfp385b"
                     /gene_synonym="B830010L13Rik; C130013B13Rik; Zfp533;
                     Znf385b"
                     /note="hexamer: AATATA"
     polyA_site      2168
                     /gene="Zfp385b"
                     /gene_synonym="B830010L13Rik; C130013B13Rik; Zfp533;
                     Znf385b"
                     /note="major polyA site"
     polyA_site      2177
                     /gene="Zfp385b"
                     /gene_synonym="B830010L13Rik; C130013B13Rik; Zfp533;
                     Znf385b"
ORIGIN      
        1 gaggccaggc gcgcaggcgc cgagcgtgga gaccgcgagc ggccgctcag cccgcgctcc
       61 cgctgggtcg gacagttccg ggggcccgcg gcgcagagct gtcgccggtg ccaccgcccc
      121 gggctgccgc agaccgcggg agagcgtctg cgcggagctc cagcgcagcc ctggcgggag
      181 cgccgcctcc caggcgccgg ccacatcccc ccggcctcag gagcggctgc cccgcgcgcc
      241 cgccgcccgc cgcccgcgcg cagagatgct ctacatttca ggctcatcag agattaaatt
      301 gatatttatg ggctaacctg gaaatttaca atttgtttca ctacatctgc aagaaaatat
      361 gtgcaaattc cagttgactg atttgtaaag gggtttttag aacacgattc agtttatcaa
      421 gaactacttg agccccgcca gccactgtaa agatggaatc atgaacatgg caaccttcct
      481 ccggggcttt gaagaaaagg ggttaaagaa cgacaggcct ggggaccagt tcagcaagga
      541 gaagaagaag attctcttct ccttttgtga agtgtgcaac atccagctaa actccgctgc
      601 tcaggcccag gtccattatg acggcaaatc ccatcgaaag cgggtcaagc agctgagcga
      661 tggccagccc ccacccccgg tccagggctc agtgccactg ctggctggcc cttgcccttg
      721 ccctgggcct ggcccgaaca ccagcacagg cagcgcatgc cacaccacta cccttcctgc
      781 cctcgtgcgc acacccaccc tgatgatgca gccttcgctg gacatcaaac cgttcatgtc
      841 ttttccagtg gacagtagct ctgccgtggg gctctttcca aactttaaca caatggaccc
      901 tgtgcagaaa gcagtcatta accacacatt tggagtctcc attcccccga agaagaaaca
      961 agttatttcc tgtaacgtct gtcagcttcg ctttaactcg gatagccagg ccgaggccca
     1021 ctacaaagga agtaaacatg ccaagaaggt caaagctcta gaggcaacga aaaataaacc
     1081 caaaatggtt ccttccaagg acagcgcaaa ggctaatccc agctgctcca tcaggccagg
     1141 cacaggcgac agctctgaca aatcagaaga caaagggaag ataaaagcca ccagttccag
     1201 tcagccctca ggctccgaag gaggctcctt tctcctcaaa tctggcacaa cacccctgcc
     1261 acttggagcc atcgcttctc cctccaagag cacaaacggc gctccagggt ctgttgctga
     1321 gtcagaagaa gaaaaagcca aaaaattact ctactgctca ctatgcaagg tggctgtgaa
     1381 ctccctgtca cagctggagg ctcacaacac aggatctaaa cacaagacca tggttgaggc
     1441 tcgtaatgga gctggtccaa ttaagtccta tccaagacct gggtcaagat taaaggtgca
     1501 gaacggcagt aagggctcag gactacagaa caaaatgttt cattgtgaga tctgtgatgt
     1561 tcacgtgaac tcagagattc aactcaaaca gcacatttca agccgaaggc ataaagaccg
     1621 cgtggcagga aaaccgctga agccgaaata cagcccctac aacaagctgc agcggagccc
     1681 aagcatctta gctgcaaagc ttgcattcca gaaagatctg atgaagcctc tggcccctac
     1741 gttcctgtct tcacccctgg cggccgcagc cgtgtcctct gcgctgtcac tgccacctcg
     1801 gccatccgcc tctctgttcc aggctgcagc catccctcct gcgctgctga ggcctggcca
     1861 cgggcccatc cgggccacgc ccgcctccat cctctttgcc ccttactaaa cacccagagc
     1921 ccgcgacagg ccaggccagt gggaaggtgt agaagaaaag cccaaaggat tcagcagtat
     1981 aagccctgtg tgtgactgta agtaccccac ccacccactc acaaagtgca ggccaccgcc
     2041 cagccccacc tccagggaca aaaggaggcc aggctcaagg gcgcgtctct tccggtgccc
     2101 tctccatcct accccagcca attggtgtat ttgagatact taagtttctt ggaaatatat
     2161 tgatcagaga aagaaaaccg accttgtgtg ttcccatggc gtaatgatct ggcttagaaa
     2221 caaaatagaa tctcttcctg acagacttga acagtaggct cttcctcgga tgtctgtaaa
     2281 taactccaga atccaagcgg gcatattcta gtgtggaaca aaagtccatc gcaagtgctt
     2341 aattgtggat accatcctcc ccacggctca tggcggtttt tttttttttc ttttctggtg
     2401 tactagtgtc cacagggatt gtgtactgtt ctagacccga gtactgttgt accctgcgta
     2461 gtactagatc gtaaccctcg ttgaattaaa cttttttttt cattgctgtg taattgttag
     2521 gaagcaaagt agctttgaaa ttttttctct ttaagagaac aaaagataat gtattttctt
     2581 tatttcatgt tttatttgga gatatttaaa cgaaatagaa agccatataa catagctata
     2641 attactacct gtttgctatt tttgttttta acttattttt gtagcatcct cactggtttg
     2701 agttgctaag caaatgtata caaaaaagac aaacaaacaa aaaaaaaaaa acaaacaaaa
     2761 acaaaaaaac aaaaagagct tcctaaattg cacatttttg caccttctgt gcatctgcaa
     2821 gaagacagtg aatccgtgta tttctacata atggtcttca ctttaaactt ctgttttcca
     2881 ttggtaacaa tgctacataa ctctgtggct ccctgatgca ataatgtaca gaagatatat
     2941 aatttataaa ttgaacaatc tgtctttctg ttcaatgact gtgtcgcagg tcatgtgacc
     3001 atgcttcccc tcccccctag tagccccccc ccaaaaaaaa aacctgttgt taagaagact
     3061 ggaatgttgt gatatcaggg gcaagaggta tcataaaaca acaacataga gtgaactctt
     3121 ttagagggcc tatatctgca atctgtaaat ggtaaaatgt ctgtgtattt ttttaaatgt
     3181 accttttcaa taaaagtacc aaaaaaaaaa aaaaaaa
//
