LOCUS       NM_009329               4061 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus zinc finger protein 354A (Zfp354a), transcript variant
            1, mRNA.
ACCESSION   NM_009329
VERSION     NM_009329.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4061)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 4061)
  AUTHORS   Yokoyama,S., Ito,Y., Ueno-Kudoh,H., Shimizu,H., Uchibe,K.,
            Albini,S., Mitsuoka,K., Miyaki,S., Kiso,M., Nagai,A., Hikata,T.,
            Osada,T., Fukuda,N., Yamashita,S., Harada,D., Mezzano,V., Kasai,M.,
            Puri,P.L., Hayashizaki,Y., Okado,H., Hashimoto,M. and Asahara,H.
  TITLE     A systems approach reveals that the myogenesis genome network is
            regulated by the transcriptional repressor RP58
  JOURNAL   Dev Cell 17 (6), 836-848 (2009)
   PUBMED   20059953
REFERENCE   3  (bases 1 to 4061)
  AUTHORS   Tekki-Kessaris,N., Bonventre,J.V. and Boulter,C.A.
  TITLE     Characterization of the mouse Kid1 gene and identification of a
            highly related gene, Kid2
  JOURNAL   Gene 240 (1), 13-22 (1999)
   PUBMED   10564808
REFERENCE   4  (bases 1 to 4061)
  AUTHORS   Jacob,A.N., Manjunath,N.A., Bray-Ward,P. and Kandpal,R.P.
  TITLE     Molecular cloning of a zinc finger gene eZNF from a human inner ear
            cDNA library, and in situ expression pattern of its mouse homologue
            in mouse inner ear
  JOURNAL   Somat Cell Mol Genet 24 (2), 121-129 (1998)
   PUBMED   9919311
REFERENCE   5  (bases 1 to 4061)
  AUTHORS   Brady,J.P., Duncan,M.K., Wawrousek,E.F. and Piatigorsky,J.
  TITLE     The transcription factor, Kid-1, is highly expressed in both eye
            and kidney of the mouse
  JOURNAL   Exp Eye Res 64 (2), 287-290 (1997)
   PUBMED   9176064
REFERENCE   6  (bases 1 to 4061)
  AUTHORS   Kim,S.S., Chen,Y.M., O'Leary,E., Witzgall,R., Vidal,M. and
            Bonventre,J.V.
  TITLE     A novel member of the RING finger family, KRIP-1, associates with
            the KRAB-A transcriptional repressor domain of zinc finger proteins
  JOURNAL   Proc Natl Acad Sci U S A 93 (26), 15299-15304 (1996)
   PUBMED   8986806
REFERENCE   7  (bases 1 to 4061)
  AUTHORS   Danciger,M., Brady,J., Adamson,M.C., Farber,D.B., Piatigorsky,J.
            and Kozak,C.A.
  TITLE     Chromosomal localization of the genes for five zinc finger proteins
            expressed in mouse lens
  JOURNAL   Genomics 28 (1), 39-43 (1995)
   PUBMED   7590745
REFERENCE   8  (bases 1 to 4061)
  AUTHORS   Croyle,M.L., Bhattacharya,A., Gordon,D.F. and Maurer,R.A.
  TITLE     Analysis of the organization and nucleotide sequence of the
            chromosomal gene for the beta-subunit of rat thyrotropin
  JOURNAL   DNA 5 (4), 299-304 (1986)
   PUBMED   3017658
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY137626.1, BC050843.1, AK083769.1 and AL645962.22.
            
            [WARNING] On May 2, 2024 this sequence was replaced by NM_009329.5.
            
            On May 21, 2016 this sequence version replaced NM_009329.3.
            
            Transcript Variant: This variant (1) differs in the 5' UTR and uses
            an alternate in-frame splice site in the 5' coding region, compared
            to variant 3. It encodes isoform 1, which is shorter than isoform
            3.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC050843.1, AF184111.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849380
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-32                BY137626.1         2-33
            33-2526             BC050843.1         1-2494
            2527-3105           AK083769.1         690-1268
            3106-4048           AK083769.1         1271-2213
            4049-4061           AL645962.22        58599-58611
FEATURES             Location/Qualifiers
     source          1..4061
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 30.97 cM"
     gene            1..4061
                     /gene="Zfp354a"
                     /gene_synonym="kid1; Tcf17; Znf354a"
                     /note="zinc finger protein 354A"
                     /db_xref="GeneID:21408"
                     /db_xref="MGI:MGI:103172"
     exon            1..178
                     /gene="Zfp354a"
                     /gene_synonym="kid1; Tcf17; Znf354a"
                     /inference="alignment:Splign:2.1.0"
     exon            179..261
                     /gene="Zfp354a"
                     /gene_synonym="kid1; Tcf17; Znf354a"
                     /inference="alignment:Splign:2.1.0"
     CDS             229..1947
                     /gene="Zfp354a"
                     /gene_synonym="kid1; Tcf17; Znf354a"
                     /note="isoform 1 is encoded by transcript variant 1;
                     transcription factor 17; renal transcription factor Kid-1;
                     kidney, ischemia, and developmentally-regulated protein 1"
                     /codon_start=1
                     /product="zinc finger protein 354A isoform 1"
                     /protein_id="NP_033355.2"
                     /db_xref="CCDS:CCDS24648.1"
                     /db_xref="GeneID:21408"
                     /db_xref="MGI:MGI:103172"
                     /translation="MAPEQWEATSQVSLTFEDVAVLFTRDEWKKLVPSQRSLYREVML
                     ENYSNLASLGFPFTKPKVISLLQQGEDPWKVEEEGPGGFSLGLKCSQRTTKSTQTQDS
                     SFRELIMRKSKRKEPWNMKSENLSIHEGKLEEKWDVNASTIERSYKSNELSPKSHREK
                     RSSECEKQISYLSNPLGITPDKRYKCSMCEKTFINTSSLRKHEKNHSGEKLFKCKECS
                     KAFSQSSALIQHQITHTGEKPYVCKECGKAFTLSTSLYKHLRTHTVEKSYRCKECGKS
                     FGRRSGLFIHQKVHAGENPYKYNPGRKASTSLSGCQRIHSRKKTYLCNECGNTFKSSS
                     SLRYHQRIHTGEKPFKCSECGRAFSQSASLIQHERIHTGEKPYRCSECGKGFTSISRL
                     NRHRIIHTGEKFYNCNECGKALSSHSTLIIHERIHTGEKPCKCKVCGKAFRQSSALIQ
                     HQRMHTGERPYKCNECGKTFRCNSSLSNHQRTHTGEKPYRCQECGMSFGQSSALIQHR
                     RIHTGEKPFKCNTCGKTFRQSSSRIAHQRIHTGEKPYECNTCGKLFNHRSSLTNHYKI
                     HVDEDP"
     exon            262..388
                     /gene="Zfp354a"
                     /gene_synonym="kid1; Tcf17; Znf354a"
                     /inference="alignment:Splign:2.1.0"
     exon            389..484
                     /gene="Zfp354a"
                     /gene_synonym="kid1; Tcf17; Znf354a"
                     /inference="alignment:Splign:2.1.0"
     exon            485..4061
                     /gene="Zfp354a"
                     /gene_synonym="kid1; Tcf17; Znf354a"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2498..2503
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zfp354a"
                     /gene_synonym="kid1; Tcf17; Znf354a"
                     /note="hexamer: ATTAAA"
     polyA_site      2518
                     /gene="Zfp354a"
                     /gene_synonym="kid1; Tcf17; Znf354a"
                     /note="major polyA site"
     regulatory      2592..2597
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zfp354a"
                     /gene_synonym="kid1; Tcf17; Znf354a"
                     /note="hexamer: AATAAA"
     polyA_site      2621
                     /gene="Zfp354a"
                     /gene_synonym="kid1; Tcf17; Znf354a"
                     /note="major polyA site"
     regulatory      2707..2712
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zfp354a"
                     /gene_synonym="kid1; Tcf17; Znf354a"
                     /note="hexamer: ACTAAA"
     polyA_site      2728
                     /gene="Zfp354a"
                     /gene_synonym="kid1; Tcf17; Znf354a"
     regulatory      3848..3853
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zfp354a"
                     /gene_synonym="kid1; Tcf17; Znf354a"
                     /note="hexamer: ATTAAA"
     polyA_site      3869
                     /gene="Zfp354a"
                     /gene_synonym="kid1; Tcf17; Znf354a"
                     /note="major polyA site"
     regulatory      4035..4040
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zfp354a"
                     /gene_synonym="kid1; Tcf17; Znf354a"
                     /note="hexamer: AATAAA"
     polyA_site      4053
                     /gene="Zfp354a"
                     /gene_synonym="kid1; Tcf17; Znf354a"
ORIGIN      
        1 agagggctcc gcggccacca ccctctggac cccaagatct gacccccccg tgagccttcg
       61 cgggtcttag ggcgtctgtg gcgcggctcg aggctagggg ccaaggtccc cgtgcagagt
      121 ccttacccgc ggcggctcag agcatatgtg aggcgcggcg ggagccggag gagggaagat
      181 cctccctcat cttcacccat ctttggaaga agaaccttca gaaagaagat ggctcctgag
      241 caatgggaag cgacatctca ggtgtcgttg acatttgaag acgtggccgt gctctttacc
      301 cgggatgagt ggaagaagct ggttccctct cagagaagcc tgtaccgtga ggtgatgctg
      361 gagaactaca gcaacctggc ctcgctggga ttcccgttta ccaaaccaaa agtgatctcc
      421 ctgctgcagc aaggagagga tccctggaag gtggaggaag aaggccctgg aggcttctct
      481 ctcggactga agtgcagtca gagaaccact aagtcaactc aaacacaaga ctcttcattt
      541 cgggaactga ttatgagaaa atctaaaaga aaagaacctt ggaacatgaa gtcagaaaat
      601 ctttccatac atgaaggcaa attagaggaa aagtgggatg tgaatgcctc gactatagaa
      661 agaagctata aaagcaatga actgagccca aagtcacata gagaaaaaag gtcatcagaa
      721 tgtgaaaagc aaatatcata tttatctaat ccattaggaa tcaccccaga taaacgctat
      781 aaatgtagta tgtgtgagaa aactttcatt aacacctcat ctcttcgtaa acatgagaaa
      841 aatcatagtg gagagaaatt atttaaatgt aaagaatgtt caaaagcctt tagccaaagt
      901 tcagccctta ttcaacatca aataactcat actggagaga agccttatgt atgtaaagaa
      961 tgtggcaaag ccttcactct cagtacatcc ctgtataaac atctaagaac ccacactgta
     1021 gagaaatcct acagatgtaa ggaatgtggt aaatcctttg gccgaaggtc aggtcttttt
     1081 atacaccaga aggtccatgc tggagaaaac ccttataaat ataacccagg gaggaaggca
     1141 tctacttccc tttcaggatg ccagagaatt cattccagaa agaagaccta cttgtgcaac
     1201 gaatgtggca acacctttaa gtctagctca tcccttcgtt atcatcagag gatccacacc
     1261 ggagagaaac ctttcaagtg cagtgagtgt ggtagggcct tcagtcagag tgcatcactt
     1321 attcagcatg aaagaatcca cactggagaa aagccctaca gatgcagtga gtgtgggaaa
     1381 ggcttcactt ccatctcaag actcaataga caccgaataa ttcatacggg agagaagttt
     1441 tataattgca atgagtgtgg caaagcctta agttcccatt caactcttat tattcacgaa
     1501 agaattcaca ctggagagaa accgtgtaaa tgtaaagttt gtgggaaagc cttccgacaa
     1561 agttcagctc tgatccaaca tcagagaatg cacactggag aaagacccta taaatgcaat
     1621 gagtgcggca agaccttcag gtgtaactca tccctaagta accatcagcg aacccacact
     1681 ggagagaagc cgtaccgatg tcaggaatgc gggatgtcat ttggtcaaag ttcagctctt
     1741 attcagcacc gaaggattca cactggtgag aaacccttta aatgtaacac gtgcgggaaa
     1801 acctttaggc agagctcctc acggatagca catcagcgaa ttcatactgg agagaaaccc
     1861 tatgaatgta acacatgtgg gaaacttttc aaccataggt catccctcac caaccattat
     1921 aaaattcacg tggatgagga cccttaaaaa tacatttgca ggtgtaaaag ccttaaacca
     1981 aagctcttca gagaatatct tgagagatgt aataaacata atatgggggg tctctataat
     2041 catttagtta ctgtcaacta aattccatgg ataagtttta tgtaacaggt aggaacaaaa
     2101 tggtcatgcc tgtctaacac ttttaaaaat tacttgagat ccaggggttc atacatgtag
     2161 ctactgggac ccagagacat gaggattgct tgactccatg agtttgaagc agcctcagca
     2221 aacctaggga ggtttccatc tcaaaagatc agtgacctga aatggagagt tcacagttga
     2281 agaccttgac ttcaggtatt tgtaaaatgg tgcttttctc tctgcagcag tgtgtgctag
     2341 aaacagttgt aattataggc atctaagtgc acagaggagt gcgctggact tctcagtagc
     2401 aaaacactaa actctactgt ggtgatattt ttataccact ttaataacat tcaaaaggga
     2461 tcaactcatt tttaagaaaa aagagccaaa ataaaagatt aaaatgagct gtaatctacc
     2521 tcttaagtct ctggaacatc tccttttctt gaccggattt caaatgtgtg tggatattat
     2581 tataaatgaa aaataaaaag ctcatctcct ggtattgtga attggagata gtccacctag
     2641 ttattaattc tgttcccaga ggtttttgtt gttgctgttg ttttgattgc ttcaaagtca
     2701 tgtgctacta aattctacct ttgacccatg tgctgtcgtc gaggttgtgt gttaagtacg
     2761 ggaacagcaa ctaaggagta gctcagtggt taggagtttc tgcagtttca agtgacccag
     2821 cctcaggttc cagcacccat gtcaggtggc tcacaaatgc ccctacctgc aggcagatct
     2881 gatgtctcta gtcctcacag gcaattgcac acattgcata ttcatgtgtg tgtgtgtgta
     2941 cacagtttaa atctttctaa aagtgagaaa taaactcaaa gttactaaga acatataagt
     3001 tttaaccaca cacgcaaaac ccttatcaga agacatggca aatctaacac ctgtaggaaa
     3061 atgctgaaga tcttgctatt atttagagct gcgtgtgtgc cccccaaatt tatgggttga
     3121 aatgctagac tctggggtga tgaaaagatt actaggccat gtgaattagc tcctctttaa
     3181 tggagttagt gttgtggtga aatagtaaac tctttttcag ctgtctctca aatagcataa
     3241 gaagatacct ttgaaaggta tgttttcgcc agacagcaaa atatcacccc ttaaaagttg
     3301 tatttaccaa tatgaatatc tttattaaca tcactggatt tagtatcacc tagaggacac
     3361 acctctggtt atgtcttcga gggtgttgct agagaggtct acctgtgggg caaagaacca
     3421 tcctatatgt gcatggaatc attccacgga cgagtcctgg actgaaaaaa aaaaagccag
     3481 ctaaatacaa gaatttttct gttttcagct ccattaaaac ttgaggcatc agcctaatgc
     3541 ttgtacaacc acaagctcct cctactcttg ctctcctaat gtgatcagac ctgtgctaat
     3601 tgtaactgta gtgacattgt atgtatgtat gtatgtatgt atgtgggtat atgtgtgcag
     3661 atatatacat atatatgcta tatgtatgtt tgagacaggg tttctctgtg tgtagccctg
     3721 actgttcagg aattcactct gtagaccagg ctggcctcag agatctgcct gcctctgcct
     3781 tctgagtgct ggaattaaag gcatgggcta ccactgcctg gcctatattt gtaattttca
     3841 gttaaaaatt aaattcttca tttgcagtag ccacagatcc tccgttgaaa aaagttgtgt
     3901 tgccttttgc tgatccagac ccagaaatta tttggtgtga caattttctg caaaatgctc
     3961 tgtagggaca tgggaagaca gccatctcac accaggtagc acatcacatt gctggtaact
     4021 acacagcacc tggaaataaa atgtcaaatc aaatgagatg a
//
