LOCUS       NM_017467               6893 bp    mRNA    linear   ROD 30-JUL-2024
DEFINITION  Mus musculus zinc finger protein 316 (Zfp316), mRNA.
ACCESSION   NM_017467
VERSION     NM_017467.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 6893)
  AUTHORS   Mugford,J.W., Yu,J., Kobayashi,A. and McMahon,A.P.
  TITLE     High-resolution gene expression analysis of the developing mouse
            kidney defines novel cellular compartments within the nephron
            progenitor population
  JOURNAL   Dev Biol 333 (2), 312-323 (2009)
   PUBMED   19591821
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC123686.11 and BC057078.1.
            
            On Aug 11, 2009 this sequence version replaced NM_017467.2.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            CCDS Note: The coding region has been updated to extend the
            N-terminus. The use of an alternative upstream start codon, which
            appears to be rodent-specific, would result in a protein that is 1
            aa longer at the N-terminal. reason to assume the first AUG
            wouldn't be used at least some of the time. A second more conserved
            AUG exists, just one aminoacid downstream from the start codon, and
            no experimental evidence exists to show which AUG is used in vivo.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC057078.1, SRR7345562.1202961.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849381
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-83                AC123686.11        67190-67272
            84-4867             BC057078.1         1-4784
            4868-6893           AC123686.11        85492-87517
FEATURES             Location/Qualifiers
     source          1..6893
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 82.03 cM"
     gene            1..6893
                     /gene="Zfp316"
                     /gene_synonym="Emzf1; Mzf3; Znf316"
                     /note="zinc finger protein 316"
                     /db_xref="GeneID:54201"
                     /db_xref="MGI:MGI:1860402"
     exon            1..172
                     /gene="Zfp316"
                     /gene_synonym="Emzf1; Mzf3; Znf316"
                     /inference="alignment:Splign:2.1.0"
     exon            173..300
                     /gene="Zfp316"
                     /gene_synonym="Emzf1; Mzf3; Znf316"
                     /inference="alignment:Splign:2.1.0"
     exon            301..689
                     /gene="Zfp316"
                     /gene_synonym="Emzf1; Mzf3; Znf316"
                     /inference="alignment:Splign:2.1.0"
     exon            690..781
                     /gene="Zfp316"
                     /gene_synonym="Emzf1; Mzf3; Znf316"
                     /inference="alignment:Splign:2.1.0"
     exon            782..908
                     /gene="Zfp316"
                     /gene_synonym="Emzf1; Mzf3; Znf316"
                     /inference="alignment:Splign:2.1.0"
     exon            909..1022
                     /gene="Zfp316"
                     /gene_synonym="Emzf1; Mzf3; Znf316"
                     /inference="alignment:Splign:2.1.0"
     exon            1023..6893
                     /gene="Zfp316"
                     /gene_synonym="Emzf1; Mzf3; Znf316"
                     /inference="alignment:Splign:2.1.0"
     regulatory      4849..4854
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zfp316"
                     /gene_synonym="Emzf1; Mzf3; Znf316"
                     /note="hexamer: AATAAA"
     polyA_site      4867
                     /gene="Zfp316"
                     /gene_synonym="Emzf1; Mzf3; Znf316"
                     /note="major polyA site"
     regulatory      6871..6876
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zfp316"
                     /gene_synonym="Emzf1; Mzf3; Znf316"
                     /note="hexamer: ATTATA"
     polyA_site      6890
                     /gene="Zfp316"
                     /gene_synonym="Emzf1; Mzf3; Znf316"
                     /note="major polyA site"
ORIGIN      
        1 ggggccggcg ggcggcactt ccggtgccca cgcgccgccg cctcctccgc cgtcgcgcag
       61 ctcgcggccg tcactttgtg tagtgcgggg gggagtcccc ggtggtcaca gccccccacc
      121 ccccacgagt ccgtgtctcg ctccggcttg gccgggcccg ggcgcgcgcg cgaaggggtt
      181 ctgagagctt gttccctcaa agagacgaaa acaagagcct tcccacaccc cgcgagccgc
      241 ataagtcctt gtagtcgacg gtcctccggc ccggcctggt ccatgtgcac caagggctgg
      301 gccatacgga ggctctctcc cagggatgat ggctgccctt cagagtgctc cagactcccc
      361 agctacccag ctggagccag cagaagatgg gtcagaatgt gatgctgacc ccgaggagga
      421 ggaggaggag gagcagcagg aggaggagga tgaagaagag gaggaagagg tagtagtaga
      481 agaagtggcc acaccggtgc aggaggtggc agaagtagag gtggaagcca actcagcaga
      541 caatggtgga ggtgatgatg atgatgatgg tggtggtggt gatgatgacg tggaggaggt
      601 cctggcagag gagcagactc tgagcttagg gacccaggag cggcatagca atggtggtca
      661 tgccaaggca ccagttcttc aaggaaaagc cctacagacc tcccgggtat ctcccactac
      721 tcaggatgaa gatgtggagg aagaagagga agaggaagat gaggagcatt tcctgaccca
      781 gggcctggtg acttttgaag atgtggccgt gtacttctct ttggaggagt gggagaggct
      841 gggtgtggac cagcgggatc tgtaccggga agtaatgcag gagaactatg ggatcctggt
      901 ctccttggga tacccaatcc ctaagccaga tctgatcttc cacctcgaac aaggagaaga
      961 accttgggtt gaagatggcc cccatcccga ggagggagat gtcgtcactg gtgtctacac
     1021 gggagcctgg ttctggaacg atgacataga ggaccacgag gaggaagatg acgaggactt
     1081 ccttgctgag gtggctgagg aggagaatga gcccccgggg ctatggtctg ctgcctatgg
     1141 agtgggggat gtgcctggga cttggggccc cgacgactcg gattcggtgc agactccaga
     1201 gggttgggga cccaacccag gcagtctcgg tatcctggcg gaggaggttg aagcaaaaca
     1261 tttcctgtct ggccgggagc ctggggagaa ctttctggtg ccctgggcat ttcccgcagt
     1321 ggctgtcccc atcggatgtc cggagaccac ttgcgatgtg tgcggcaaag tgtttccgca
     1381 ccgttcccgc ctggccaagc accagcgcta ccacgcagcg gtcaagccct tcggctgcga
     1441 cgagtgcggc aagggctttg tgtaccgctc gcacctggcc atccaccagc gcacccatac
     1501 cggcgagaag cccttcccgt gcccggactg cggcaagcgc ttcgtctaca agtcgcacct
     1561 ggtcacgcac cggcgcatcc acacgggcga gcggccctac cgctgcgtct tctgcggcgc
     1621 gggcttcggg cggcgctcct acttggtgac ccatcagcgc acgcacaccg gcgagaggcc
     1681 ctacccatgt ctacactgcg gccgtagctt cagccagagc tcagcgctcg cccgccacca
     1741 ggctgtgcac accgctgatc gtcctcactg ctgtccggac tgcggccagg ccttccgcct
     1801 gcgcgccgac ttccagcgtc accggcgcag tggcggctgc acggaaccca gcagtggcga
     1861 tggcgcgcgg atggctcccc acgaggtggg gatggctccc aatgaggtgg agatggcagt
     1921 cgcggctgta gccacggtgg aacctgagga actggaggcc gcgcccgcag agactgaaga
     1981 gcccgaggct ggtgtggcag atggagacac cgaggctgaa gccagacagg acgagcaggt
     2041 ggtggtcgct ccggcggcag aagcgactgt ccccgacagc aagaaggacc ctgaaccaga
     2101 cagacggttt cgtgagatgg gcaacggcct ggctgagggc gaagggcctt cctcgcatcc
     2161 gttcggcttc cacttcccca tgcatcccaa gtcctggctg catccggacg gtttccccat
     2221 tctggggttt cccgagttct ctgaacggct gcaagccgat ggacgccatc tgcccggtcc
     2281 cctgggctcc ccgctttccc tgcaaggcat ggggttggct tgcgacccgt tccgcagcgt
     2341 gggccccggc gccggcgtgg atggtggcct gcgagcattc ccgcccgctg tccgctcctt
     2401 gctgtcggag cccgcgcctg cggcgctggc ggaggaggag agcccgtgga tctgctccga
     2461 ctgcggcaag acgttcgggc ggcgcgcggc gctggccaag caccagcgct accacgcggg
     2521 tgagcggccg caccgctgcg ccgactgcgg caagagcttc gtgtacggct cgcacctggc
     2581 gcgccaccgg cgcacgcaca cgggcgagcg gcccttcccg tgcccggaat gcggcgctcg
     2641 cttcgcccgc ggctcgcacc tagcggcgca cgtgcgcggc cacaccggcg agaaaccgtt
     2701 cgtgtgcggc gtgtgcgggg caggcttcag ccggcgcgcg cacctcacgg cgcacgggcg
     2761 cgcgcacacg ggcgagcggc cctacgcgtg cgccgagtgc ggccggcgct tcggccagag
     2821 cgccgcgctc acgcggcacc agtgggcaca cgccgaggag aagccgcacc gctgcccgga
     2881 ctgcggcaag ggcttcggcc acagctcgga cttcaagcga caccgacgca cacacacggg
     2941 cgagaagccg ttccgttgcg ctgactgcgg ccgcgggttc gcacagcgct ccaacctcgc
     3001 caagcaccgg cgcggccaca cgggcgagcg gcccttcccc tgccccgagt gcggcaagcg
     3061 tttctctcag cgatcggtgc tcgtgacgca ccagcgcacg cacacggggg agcggccgta
     3121 cctgtgctcc aactgcggcc ggcgcttctc gcagagctcg cacctcctca cgcacatgaa
     3181 gacgcaccgc gggccgggga gcgcgccggc gcacacctcc tccaccaagg cccaggcgcc
     3241 tgccaaggcc acgccgcctc tgcccccacc gggctcgggc tccggaacgc tgctcgagtt
     3301 cgcgggagga accagcttcg gctccgatcc tgccgcgttc gccgggccct ccggcagcta
     3361 cgaggagagc atcctgtgag gtctatcgaa gctcggcgtg tcctccagct ctttggcggg
     3421 ctgaggattc ccactcttgg gtgctcgggt ctctcccgcc ccaagcttca gatttcgctt
     3481 gggtgcgcac gggccgccac cctgaccaag accgacccgt ccctcgatct gtggtgcagg
     3541 ggcggtggga tggcgggcaa ggcctattag ttcatcacgg atccggttca ggtgccctag
     3601 agccccgctg cttaggagtc tgtcaccggg ctctctggtg catttgggtt tcttggtggg
     3661 tttggcctct actcattctc cttgggagat ttggggaccg tcttcctgtc acttgagtga
     3721 gtccagtaag tgttcagaac ctagttcaag gcaggcagga acctcagtag gttttgggga
     3781 agatagaggt atgaacgggg taagtttttg ttctgtcgcc tgtaggtatt tattcccatc
     3841 gcttatatga cccgaagagt gtgggaggag ttgaaaaagc aagataccaa atgcatagcc
     3901 aggtcgcaga tattgtccag gaccctgggg agttggaagc cttattcttt ggaaatcctc
     3961 actccaacct ctaaacaggt ctggcaagcg ctggccacca catggacttt ggtattgcta
     4021 tcctctctca gtttgttctc tagtggctgt aagtagcaca cgtggacatc tttggggtgc
     4081 ctggtgtggg ctcctacaga cacagttctc actttcattt cctagcagat ccctcccctg
     4141 gagcaggtgg ctgtggagcc ctgtgctcag ccagcctttc cacagcactg gggtgggtcc
     4201 gggaatcttc ccgctcgtcc tgtaaaaagg gcccaacatc ctctgcaagc ctcttcacac
     4261 agcctctgta atcaccctac actaggagca ggcagtgttt ctgccgtggg tgggtgggtc
     4321 tccacataaa ggacccccgt ggagctgagc tcacagcgcc ttactatgca aggcccctta
     4381 cagtggacag ctaactttcc agccctgact gttggcacct gtggtgtggc tcacaggagc
     4441 ccctcccacc ctccatgaat tctgggccag tgtgactggg gactagagaa gtgagatttc
     4501 cacccaactg cattcccttt tagacctaga tcctttcttg tagtatagac atgaccttgg
     4561 ggcccaagag ctaacaggca ggctgctagg tgctgggtgg gtagtccatg ggtgggaaga
     4621 gagcctgggt ggtgatggtc agaacttagc ctgacctgtg ctgtcgagtg gggaggaaga
     4681 catgggtcct cattgttcag cagtggatat ctgtccctct taatcttctc tggacatgag
     4741 cttcagatcg agccagggca gggtggtccg ggagggtgcc acccatccct catagtctcc
     4801 agtgtttcca ccctgtcccc tccgctgtgg tcaggaggac ctagctttaa taaagacgga
     4861 gaaacaagct tggggactgg actctatttt tgccccacct tggtgcctat tagcgacact
     4921 cactctggaa ggcccatctc ctttctgaca tttccccctt tgagaaacca gaatcgattc
     4981 tggcatcatg gattgggcct gtgtccacca catcttactg ggatacctca cactgccatg
     5041 aatttggaac aacacacatg gggcgtggct gtgactagct aaccttccag gttcagagag
     5101 agggcctagt ctcctttatg ggagtgcaga cccctggcct ggcctgccct tttctcaggg
     5161 actccaatgc tcagtggctt gcctactcca gctccacgga ggcgtgacca ccaccagagt
     5221 tcccaaacaa ccccctttaa actggctttt cttagtcttc cagctgatct tttcccgatg
     5281 ggtttgaaag aaatatgcaa atgtgatttg agacatgggg ataaaggaga ctggcatctc
     5341 cattaaaaca acgaacaggc cgggcagggg atacagctca gttggtacag tttgcgcagt
     5401 attcccactt tccatcccca gaactccatg gtgacacaca cacgttaccc cagcatctgg
     5461 gagatggagt caggattggg gaatttacca ttcttttcaa ctccctgggt ttgaggccag
     5521 ccttggctac atagagaccc tacctcaaaa ataacccaga ctttcagaag gcagatgctt
     5581 attaagatat aaagatgggt gaccacagcc gggcgtggtg gcgcacgcct ttaatcctag
     5641 cactcgggag gcagaggcag gcgaatttct gatttcgagg ccagcctggt ctacagagtg
     5701 agtcccagga cagccagagc tatacagaga aaccctatct cgaaggagaa aaactgaaaa
     5761 agaaaaagga aaaaaaaaaa tgggtgacca cagatcttag tgtactgaaa ggccaagtaa
     5821 tccggtgata aaggtcacca ttgactgcag ctggagtttt tctgtgttgt gtcaatccta
     5881 tgattagggg aaaaaattct cttcattacc aaggagggag gagccccagt gacctgtgaa
     5941 aggtgaccaa ctaagggtga cgtttggagg actgagcctg gccattccct ccctcagcct
     6001 ccattctcat cccaatgacc ctgttttctc agcctttgta ttttttttca cttgtctctt
     6061 tagacactgc cttctctctc tctcctctac ttatttacta gttttagatt caaataaaag
     6121 tttctcttcc ttgttcatca tttcccctca ggttataagt tagatatgaa ttgtaagaac
     6181 tccagcggtg ggggctggag agatggctca gtggttaaga gcactgactg ctcttccaaa
     6241 ggtcctgagt tcaaatccca gcaaccgcat ggtggctcac aaccatctgt aatgagatct
     6301 gatgccctct tctggagtgt cagaaaacag ctacagtgta ctcacataaa taaatcttaa
     6361 agaaacaaaa cccaaggagc tccagcagta tgagacatca agttcacctt catccccctg
     6421 acaaaactca ttctacccag tacccaggat cctgggcaca cgcacatcta tatggaaatg
     6481 gttcaggtta acgacgtgct ttagatactg tgcgacaact ggcttttccc caccatgcct
     6541 acatcctcat actttgggaa gcaacagttg gaggatctca agttctaaac gaagtctcaa
     6601 caacagtggg cagcagagag ggctcagcag tcaacaacac tggctgctct tccaggggaa
     6661 ctgatggcag ctcacaagac tctggtccca ggggacctga catccttttt tggcctatga
     6721 agacatggga aacgtatgtg gcacacagac atatagacag aacacccata cacgaaatgg
     6781 aagcaacaga acaagttatg ctaaattact tcatccgtgt tcctatctac ttcccccagt
     6841 tcagacgtat ttctcatttc acctgttaca attataacat gtgtctcttg gtt
//
