LOCUS       NM_001360465            4531 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus zinc finger protein 235 (Zfp235), transcript variant
            1, mRNA.
ACCESSION   NM_001360465 XM_011250655
VERSION     NM_001360465.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4531)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 4531)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
REFERENCE   3  (bases 1 to 4531)
  AUTHORS   Wiese,C.B., Ireland,S., Fleming,N.L., Yu,J., Valerius,M.T.,
            Georgas,K., Chiu,H.S., Brennan,J., Armstrong,J., Little,M.H.,
            McMahon,A.P. and Southard-Smith,E.M.
  TITLE     A genome-wide screen to identify transcription factors expressed in
            pelvic Ganglia of the lower urinary tract
  JOURNAL   Front Neurosci 6, 130 (2012)
   PUBMED   22988430
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 4531)
  AUTHORS   Shannon,M., Hamilton,A.T., Gordon,L., Branscomb,E. and Stubbs,L.
  TITLE     Differential expansion of zinc-finger transcription factor loci in
            homologous human and mouse gene clusters
  JOURNAL   Genome Res 13 (6A), 1097-1110 (2003)
   PUBMED   12743021
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC138791.3 and AK147833.1.
            
            On Feb 3, 2018 this sequence version replaced XM_011250655.1.
            
            Transcript Variant: This variant (1) represents the longest
            transcript and encodes the longer isoform (1).
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            CDS exon combination :: AK147833.1 [ECO:0000331]
            RNAseq introns       :: single sample supports all introns
                                    SAMN01164131, SAMN01164133 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-852               AC138791.3         73934-74785
            853-899             AC138791.3         75711-75757
            900-1637            AK147833.1         3-740
            1638-1638           AC138791.3         81913-81913
            1639-2212           AK147833.1         742-1315
            2213-4531           AC138791.3         82488-84806
FEATURES             Location/Qualifiers
     source          1..4531
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 10.27 cM"
     gene            1..4531
                     /gene="Zfp235"
                     /gene_synonym="0610030O19Rik"
                     /note="zinc finger protein 235"
                     /db_xref="GeneID:56525"
                     /db_xref="MGI:MGI:1929117"
     exon            1..852
                     /gene="Zfp235"
                     /gene_synonym="0610030O19Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            853..1191
                     /gene="Zfp235"
                     /gene_synonym="0610030O19Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1192..1249
                     /gene="Zfp235"
                     /gene_synonym="0610030O19Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             1235..3553
                     /gene="Zfp235"
                     /gene_synonym="0610030O19Rik"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /codon_start=1
                     /product="zinc finger protein 235 isoform 1"
                     /protein_id="NP_001347394.1"
                     /db_xref="GeneID:56525"
                     /db_xref="MGI:MGI:1929117"
                     /translation="MTKLQEAVTFRDVAVVFSEEEMGLLDAAQRKLYHDVMLENFLNL
                     LAVGWFHSLLAAFLSRYPTALAPLTSCGLQGNPGFTSQASHSTGIVRPHAWPLRLSLA
                     AGNFHSLFHVSLTQTGSQSPNKVDTLDSTGLRHLSLGWLPCWHMTGHDVKKLASTPDV
                     VVNIQGKSSHFLEQCHSSCHGGTEEPLQVSEDNGCLESLTSDHSSITENQEFLSGRAQ
                     SSWSKTDFSERWNHEKRCTQTLVKTKSQLLALGVDILNCISHQDNNILHKRDKVPSSG
                     DCDQVIFPMACLTQSPVYTEQKAYQCNTGQDAFIDSPSQETQQVLLGNKSPVHGTYED
                     TSYTSSVIQQSVHPGRKRYWCQECGKAFSQSSNLQTHQRVHTGEKPYTCPECGKSFNQ
                     SSHLYAHLPIHTGEKPYCCDNCGKGFSRSTDLNIHCRVHTGEKPYKCEVCGKGFTQRS
                     HLQAHERIHTGEKPYKCGDCGKCFSCSSNLHTHQRVHTEEKPYKCDECGKRFSLSFNL
                     HSHQRVHTGEKPYKCEECGKGFSSASSFQSHQRVHTGEKPFCCSVCGKGFSQSSYFQA
                     HQRVHTGEKPYRCDVCGKRFNWSLNLHNHQRVHTGERPYKCEECGKGFSQASNLQAHQ
                     SVHTGEKPFRCNACQKRFSQASHLQAHQRVHTGERPYKCDTCGKAFSQRSNLQVHQII
                     HTGEKPFKCEECGKEFSWSAGLTAHQRVHTGEKPYTCQQCGKGFSQASHFHTHQRVHT
                     GERPYICSICSKGFSQRSHLVYHQRVHSAGNP"
     exon            1250..1376
                     /gene="Zfp235"
                     /gene_synonym="0610030O19Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1377..1586
                     /gene="Zfp235"
                     /gene_synonym="0610030O19Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1587..4531
                     /gene="Zfp235"
                     /gene_synonym="0610030O19Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      4510..4515
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zfp235"
                     /gene_synonym="0610030O19Rik"
                     /note="hexamer: AATAAA"
     polyA_site      4531
                     /gene="Zfp235"
                     /gene_synonym="0610030O19Rik"
                     /note="major polyA site"
ORIGIN      
        1 tcgctctcat ggagatccag catgaggagg agcaagccag acagaaagaa ctatgcagtg
       61 tggagtgtga ggagaaaaga agcaccgtga aggcttaagg aaaagcctga ttctgaatgc
      121 tataaaggga gtgctgacct cagggcaaca ccccacccag cgaagcctcc agcctgtgag
      181 aaggaagagg aaaagcttca gcatgaggga ggccatcagt tccagcttca gcatgaggga
      241 ggccatcagt tccagcttca gcatgaggga ggccatcagt acagcttcag catgagggag
      301 gccatcagtt ccagcttcag cacgaggaag gccatcagtt ccagaaagat agtggacata
      361 gaatcggatg gggccaaggt ccagaccatc gagcagcaga acatgccagc tttggccact
      421 tggttctggc tttagagtca aggatacaag aaacacttgg ttctggcttt agagtcaagg
      481 atacaagaaa agggttcttg agcctccctt agtaatgaag gaaatgccct gaaggcagtt
      541 gtagtatagg agagttcctg catagtggcc aagagagggc attgagtgaa gctgtgaacc
      601 tggattatgt cggagaccac aagatgttga agatgccaga actatgggat cccagctgca
      661 gagagctgca gactgaggtg aaaccagcct gagagagaca agtgtgttac agccaacata
      721 gccgaaagag taaagcatct gaagagtgct ttgacatcag catggagatg cagagtttgg
      781 cctccacctt tggtttttag tcttgctatg gtccagtgtt tcctcactat actgccttcc
      841 cattaagaaa tgttccagcg ccagtgacgg ctgaggtgac ttccgctgcc gcaaggccag
      901 gctccctggc agtacttctg atgaggtgac atcctgcagc gttccgcgac ccttctgtgt
      961 gctggtgttt cggtgtgtct tctcggggac cgagtctgca tctccgggga gaagaggggc
     1021 accgctggcg tcggccggtc ctctctagct gggctctgct tgagacggcg ctgcccagga
     1081 ttcctggacc cgtctcagct gcttgtggag ccctggagag agtctagctt cccacgggag
     1141 tctgtcagag gaacggtgat ggcagatagc agtgtcctaa agccttaagt gcttgcttcc
     1201 cagagccctg ccttgtctca aagagaagag aacaatgacc aagttacagg aggcagtgac
     1261 gttcagggat gtggccgtag tcttcagtga agaggagatg gggctgctgg acgctgccca
     1321 gaggaagctg taccatgatg tgatgctgga gaacttcctg aacctcctgg cagtgggctg
     1381 gttccactcc ctgttagcag ctttcctcag caggtatccc acagctctgg cacctctgac
     1441 ctcttgtggt ctccaaggca atccaggctt cacctcccaa gcttcacaca gtacagggat
     1501 agtccgccca cacgcctggc ctctgaggct ttcattagct gcagggaatt tccacagcct
     1561 ctttcatgtg tccttgactc aaacaggaag tcagagtcca aacaaggtgg acactcttga
     1621 ctcaacagga ttaaggcacc tttcactggg gtggcttcca tgctggcata tgacaggcca
     1681 tgatgtcaag aaactggcca gcactccaga tgttgtagta aacattcaag gaaagagttc
     1741 tcacttcctg gagcaatgtc actcctcctg ccatggcgga acagaagagc ctctccaggt
     1801 ctccgaggat aatggctgtc tggagagtct cacaagcgat cattccagca ttaccgaaaa
     1861 tcaggaattt ctgtctggga gggctcagag ttcttggagt aaaacagact ttagtgagag
     1921 atggaaccat gagaaacgct gtactcagac tctggtgaaa actaagtctc agctgttggc
     1981 tctgggtgtt gacattctga attgcatttc ccatcaagat aacaatatac tgcataaaag
     2041 agacaaagtc cccagcagtg gtgactgtga tcaagtcatc ttccctatgg catgtctcac
     2101 ccagtctcct gtttacacag aacagaaggc ctaccagtgc aacacaggcc aagacgcctt
     2161 cattgacagc cccagtcagg agactcagca ggtcctctta ggaaataagt cccctgtaca
     2221 tggtacatat gaggacacta gttatacctc cagtgtcatt caacaaagtg tccatccagg
     2281 aagaaagcgc tactggtgtc aagagtgtgg caaggctttc agtcagagct caaatctgca
     2341 gactcaccag agagtgcaca cgggggagaa accctatacc tgccctgagt gtgggaagag
     2401 ctttaaccag agctcacacc tgtatgctca cctgcccatc cacacaggcg agaagcccta
     2461 ctgctgcgac aactgtggga agggcttcag ccgaagcaca gatctcaaca ttcactgccg
     2521 agtgcacact ggagagaaac cttacaagtg tgaggtgtgt gggaagggct tcacacagag
     2581 gtcacacctc caggcccatg agagaattca cacaggagag aagccatata agtgtggaga
     2641 ctgtggcaaa tgcttcagct gtagctcaaa ccttcacacc caccagagag tccacactga
     2701 agagaaaccg tacaagtgtg acgagtgtgg gaagcgcttc agcttgagct tcaacctcca
     2761 cagccatcag cgggtccaca caggagagaa gccatataaa tgtgaagagt gtgggaaggg
     2821 tttcagttca gcctcaagct tccaaagcca ccagagggtc catacaggag agaagccatt
     2881 ttgctgcagt gtctgtggga agggcttcag tcagagctcc tattttcaag cccatcagag
     2941 agttcacact ggggaaaaac catacagatg tgatgtgtgt gggaagcgct tcaactggag
     3001 tttgaacctc cacaatcacc agagagtcca cactggagag agaccatata aatgtgagga
     3061 gtgtggaaaa ggcttcagtc aggcctccaa tctgcaggcc catcagagtg tccacactgg
     3121 tgagaagcca ttcagatgca atgcgtgcca gaagcgattc agtcaggcct cgcacctcca
     3181 ggcccatcag agagtgcaca caggggagag gccctacaaa tgtgacacat gtgggaaagc
     3241 cttcagccag agatccaatc tccaagttca tcagataatt cacaccgggg agaagccgtt
     3301 caagtgtgag gagtgtggga aggaattcag ctggagtgca ggacttactg ctcaccagag
     3361 ggtccacaca ggagagaaac cctacacgtg tcagcagtgt gggaagggct tcagtcaggc
     3421 ctcacacttc cacactcacc agagggtcca cactggggaa aggccctaca tctgcagcat
     3481 ttgctctaag ggcttcagtc agagatcaca tctggtctac caccagagag tccacagtgc
     3541 agggaatccc taggtttgtt ctattaggtg ggctccacgc tgctttcctc aaacccagag
     3601 gcttcaggag acttcaccgg gattatctct tttctttggg agatcttttt tttttttctt
     3661 tttgtttttt attttattta ttttaatttt tttaagacca gatttctttg gctgtcatgg
     3721 aacttgctct gtagacctgg ctagccttga actcacagag atccacctgc tttcgactcc
     3781 tgagtgctgg gattaaaggt gtgtgcccag ctgggagatc agttctttat aaatgtcaga
     3841 aattacgtat aagaagatca ttgctctata aatgtactgt taccatgtac aagagttcta
     3901 aggttgccac cctcaggata tgacggagca ggaaatctca gcatccatcc aagtctccag
     3961 aaaggctgca ggaagtgctt taaccacagc tggtgattgg cagaaccgcc gttgactgaa
     4021 gcatcacttc ctcataggaa gctcctctct gtatctgctg tgcagagctg catgtggctc
     4081 aggacccagc cattcctgga gcaagttaga aaagcccctg caagtaaggc tcaaattcga
     4141 aaacacttgt caaccctcaa ccctgcattc atattgagtc gtattcccca gtaatcgtgt
     4201 aagggaccat tagtcagctc ccttgaggca tagtgctacc cagtcaaggc tgcagtgtgt
     4261 gacctgcctc tctagcatgg tgctttgcat ggcaatagca actctgtact ggatgagttt
     4321 tagtatttgt acttaataga ctaaaaccat gctctgtttg aaaattccat atttatcaac
     4381 ccaataaggt gaactgaaac ttatgcgatt ggaattttgg gccctgaatt cattgaggaa
     4441 agagcttttt attgtaatca ctactgcaaa tgtttttgca aagtatttgc tgatgacata
     4501 aaggttctta ataaacttga attattaatg a
//
