LOCUS       NM_001414203            3316 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus zinc finger protein 13 (Zfp13), transcript variant 3,
            mRNA.
ACCESSION   NM_001414203 XM_011246420
VERSION     NM_001414203.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3316)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 3316)
  AUTHORS   Iida,R., Ueki,M. and Yasuda,T.
  TITLE     A novel transcriptional repressor, Rhit, is involved in
            heat-inducible and age-dependent expression of Mpv17-like protein,
            a participant in reactive oxygen species metabolism
  JOURNAL   Mol Cell Biol 30 (10), 2306-2315 (2010)
   PUBMED   20231359
  REMARK    GeneRIF: Data suggest that Rhit acts as a repressor in the
            heat-induced and age-dependent transcriptional regulation of the
            (S) isoform of Mpv17-like protein.
REFERENCE   3  (bases 1 to 3316)
  AUTHORS   Guo,G., Huss,M., Tong,G.Q., Wang,C., Li Sun,L., Clarke,N.D. and
            Robson,P.
  TITLE     Resolution of cell fate decisions revealed by single-cell gene
            expression analysis from zygote to blastocyst
  JOURNAL   Dev Cell 18 (4), 675-685 (2010)
   PUBMED   20412781
REFERENCE   4  (bases 1 to 3316)
  AUTHORS   Yokoyama,S., Ito,Y., Ueno-Kudoh,H., Shimizu,H., Uchibe,K.,
            Albini,S., Mitsuoka,K., Miyaki,S., Kiso,M., Nagai,A., Hikata,T.,
            Osada,T., Fukuda,N., Yamashita,S., Harada,D., Mezzano,V., Kasai,M.,
            Puri,P.L., Hayashizaki,Y., Okado,H., Hashimoto,M. and Asahara,H.
  TITLE     A systems approach reveals that the myogenesis genome network is
            regulated by the transcriptional repressor RP58
  JOURNAL   Dev Cell 17 (6), 836-848 (2009)
   PUBMED   20059953
REFERENCE   5  (bases 1 to 3316)
  AUTHORS   Taniwaki,T., Haruna,K., Nakamura,H., Sekimoto,T., Oike,Y.,
            Imaizumi,T., Saito,F., Muta,M., Soejima,Y., Utoh,A., Nakagata,N.,
            Araki,M., Yamamura,K. and Araki,K.
  TITLE     Characterization of an exchangeable gene trap using pU-17 carrying
            a stop codon-beta geo cassette
  JOURNAL   Dev Growth Differ 47 (3), 163-172 (2005)
   PUBMED   15840001
REFERENCE   6  (bases 1 to 3316)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   7  (bases 1 to 3316)
  AUTHORS   Araki,K., Imaizumi,T., Sekimoto,T., Yoshinobu,K., Yoshimuta,J.,
            Akizuki,M., Miura,K., Araki,M. and Yamamura,K.
  TITLE     Exchangeable gene trap using the Cre/mutated lox system
  JOURNAL   Cell Mol Biol (Noisy-le-grand) 45 (5), 737-750 (1999)
   PUBMED   10512203
REFERENCE   8  (bases 1 to 3316)
  AUTHORS   Chavrier,P., Lemaire,P., Revelant,O., Bravo,R. and Charnay,P.
  TITLE     Characterization of a mouse multigene family that encodes zinc
            finger structures
  JOURNAL   Mol Cell Biol 8 (3), 1319-1326 (1988)
   PUBMED   2452975
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC154766.2.
            
            On Nov 16, 2022 this sequence version replaced XM_011246420.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7345562.2144989.1,
                                           SRR10662772.2604243.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164138, SAMN01164139
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-303               AC154766.2         106857-107159
            304-440             AC154766.2         107546-107682
            441-654             AC154766.2         111850-112063
            655-746             AC154766.2         112258-112349
            747-867             AC154766.2         112888-113008
            868-969             AC154766.2         115665-115766
            970-3316            AC154766.2         116009-118355
FEATURES             Location/Qualifiers
     source          1..3316
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 11.72 cM"
     gene            1..3316
                     /gene="Zfp13"
                     /gene_synonym="Krox-8; Zfp-13"
                     /note="zinc finger protein 13"
                     /db_xref="GeneID:22654"
                     /db_xref="MGI:MGI:99159"
     exon            1..303
                     /gene="Zfp13"
                     /gene_synonym="Krox-8; Zfp-13"
                     /inference="alignment:Splign:2.1.0"
     exon            304..440
                     /gene="Zfp13"
                     /gene_synonym="Krox-8; Zfp-13"
                     /inference="alignment:Splign:2.1.0"
     exon            441..654
                     /gene="Zfp13"
                     /gene_synonym="Krox-8; Zfp-13"
                     /inference="alignment:Splign:2.1.0"
     exon            655..746
                     /gene="Zfp13"
                     /gene_synonym="Krox-8; Zfp-13"
                     /inference="alignment:Splign:2.1.0"
     exon            747..867
                     /gene="Zfp13"
                     /gene_synonym="Krox-8; Zfp-13"
                     /inference="alignment:Splign:2.1.0"
     exon            868..969
                     /gene="Zfp13"
                     /gene_synonym="Krox-8; Zfp-13"
                     /inference="alignment:Splign:2.1.0"
     exon            970..3316
                     /gene="Zfp13"
                     /gene_synonym="Krox-8; Zfp-13"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2212..2217
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zfp13"
                     /gene_synonym="Krox-8; Zfp-13"
                     /note="hexamer: ATTAAA"
     polyA_site      2236
                     /gene="Zfp13"
                     /gene_synonym="Krox-8; Zfp-13"
                     /note="major polyA site"
     regulatory      3295..3300
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zfp13"
                     /gene_synonym="Krox-8; Zfp-13"
                     /note="hexamer: ATTAAA"
     polyA_site      3316
                     /gene="Zfp13"
                     /gene_synonym="Krox-8; Zfp-13"
ORIGIN      
        1 ctgttgtccc taatcccagc ctccaccggg cttctccatc cgttctgttc tggctgcaga
       61 cactggtttc actctaggga gggggtctcc attcccacct tcacccccgg gtctcctttg
      121 tttcctcctt gtgtgaaggg gatgctaggg aaggcacatg gaaatcggct cgtgcagtca
      181 gcttgcagaa gggggcaggg tcaaaggtgg aatgctggca agcgataatg aaggggctgg
      241 acccaggatt gggaagatga ggacacgtac cacccagacc acgaccacga tgatcgttcc
      301 caggttcttg gctaaaacct ggacggggct cgactagcaa gggaaagaac catttgctgt
      361 ttttcctggc tctgaagtgg aagatgtctg cagacagtca aagcatcgcg gctactgaga
      421 acgaggagaa atcccatgag gtcccaggta atgtgcaaca ctgtggagac atgctctctg
      481 gacaggagga gacagtgccc ttgggaacct ctcaggagtc aacacacatc aaggcagagc
      541 cagaagagcc acacagtgag ggggcatcac gggaggacag gactccagga acacagcgct
      601 ggatgtcccc gtgtcctggc cctaaggaca aaggtccgtt cctgcctggt ggagttgttc
      661 cttctccctg gactcctgta ctgtcccgag ggggacggac cagagagcga aagatggctg
      721 ctgcactcct tactgcctgg tcccagatgc cggtgacctt tgaggatgtg gccctgtatc
      781 tctcccagga ggagtgggga aggctggacc acacacagca aaatttctac agagatgtac
      841 tacaggggaa aaacgggctg gctttggggt ttcccttcag cagacctttc tgggtccccc
      901 aaattcaggg gaagggccag gtggcaagca ggatcacagg agctgaggag aggagaggtc
      961 ttggttcagg agccgtggaa atggggaagg tggttccagc cttggccgtc gcaaccctag
     1021 aggacacaaa atcgataagg actagggcca ggtgggcccc gggggaagac ccaaagtgtg
     1081 gtcagcacgt ggctagtggc ccaggtacaa agctgaccag agacactggg aaagctggtc
     1141 agctaaagcc agccccatct gaatcacgtc ctctcaagac cccagaggac agcggcccag
     1201 agaaacccag tgagggggag gaggctctga aaagtggcga agagggtctg gtacccgacg
     1261 gtgacacggg caagaagaca tacaagtgcg agcagtgtgg caagggcttc agttggcact
     1321 cgcacctggt gacacaccgg cgtacgcaca cgggcgagaa gccttatacc tgcacggact
     1381 gtggcaagcg cttcggccgc agctcacacc tcatccagca ccagatcatc cacacgggcg
     1441 agaagcccta tacctgcccc tcgtgttgga agagcttcag ccaccactcc acgctgatcc
     1501 agcaccagcg catccacact ggtgagaagc cctacgtgtg cgaccgctgt gccaagcgct
     1561 tcacccgtcg ctcggaccta gtcacacacc agggcactca caccggcgcc aagccccaca
     1621 agtgccccat ctgcagcaag tgcttcaccc agagctccgc cctggtcacg caccagcgca
     1681 cccacaccgg cgtcaagccc tacccgtgcc cggagtgcgg caagtgcttc agccagcgct
     1741 ccaatctcat cgcacataat cgcacccaca cgggcgagaa gccctaccac tgcctcgact
     1801 gtggcaagag cttcagccac agctcgcacc tcactgccca ccaacgcact caccgtggcg
     1861 tgaggcccta ctcctgccca ctttgcggca agagcttcag ccgccgctcc aacctgcacc
     1921 ggcacgagaa gatccacacc actggaccca aggctctggc catgctcatg ctgggggcgg
     1981 cagctgcggg ggcgctcacg gcaccaccac ctgcttccac ttagaagcct gagagagagc
     2041 agtgagaaca cccagggaag ctgggacaac cccgctgatg ctagggccct gggaagacgc
     2101 tgggtcttag ccagtgggat gatggagtgg ggtgaggact gggaggtggc acaggtgggc
     2161 atggtaacgt gggaggagcc agggctagaa gggcaggcac tctagctgca gattaaaggc
     2221 ctggatttca agctgtgccc ttggctctgt gtgcttggtg cttgagctga tctctgagca
     2281 tcggatagct cttggttcca ccaggcgtcc tcgttcaggt aaccctgagt caccactgtt
     2341 cgccggcctg ggaagcctct cttccttagc cttgacttga gtcacaagtc tcttttgtca
     2401 gatgtctatt ccggaacatt aggacccttt ttaaaaaatt aatatttgag tcgggtgtgg
     2461 tggcacactc ctttaatccc agcagaagca ggtggatttc tgtagttcga gcccaacctg
     2521 gtctacaaag tgagtgcaag actgcaagga cggttacaca aagaaaccct gtctcaaaaa
     2581 ccaaaacaaa attaataata ataataataa taataatagt tattattatt gtggttgttg
     2641 ttggtatcta aacgcgtgta tgggtgtgtt atagttcacc tgttgaggtc agaggacaac
     2701 tcatagaatt tatcctatac catgtgtgta actccagttg tcagtaggca tctctaccta
     2761 ctgagtcatc tcacccaggt ttctctgcat agccctggct gtcctggaac tcactttgta
     2821 gaccaggctg gcctcgaatc cgcctgcctc tgcttcccaa gtgctgggac taaaggtgtg
     2881 tgccaccacc gcctggctct cacccaggtt ttgttgtttt gagacctact ctcctgtagc
     2941 ctagggtagc atgaactagc tatgtaacgg gtgctccttg cctctatctt ccaggtactg
     3001 gaatataggt gaaaaccacc cagcctaagt tggaaccata agtctataaa caaaagcttc
     3061 caagttcagg tttcccaacc tgaagaaagc cagttacttc tgaaacggtg aagcggagtg
     3121 agaaagtccc ttcagctggc atgtcccaaa ggggggcttg gaactcgccg agccctggcc
     3181 tcttctttgg ctcataatca ccaatacctc cagtgcccgg gttttgatga tacctaccag
     3241 tctctgtagg cacctgcaca cgtgtgcaca taattatcat atatttcaca cataattaaa
     3301 aaatgttaaa tcttta
//
