LOCUS       NM_001145863            1728 bp    mRNA    linear   ROD 05-AUG-2023
DEFINITION  Mus musculus zinc finger protein 1004 (Zfp1004), mRNA.
ACCESSION   NM_001145863
VERSION     NM_001145863.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1728)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1728)
  AUTHORS   Hansen GM, Markesich DC, Burnett MB, Zhu Q, Dionne KM, Richter LJ,
            Finnell RH, Sands AT, Zambrowicz BP and Abuin A.
  TITLE     Large-scale gene trapping in C57BL/6N mouse embryonic stem cells
  JOURNAL   Genome Res 18 (10), 1670-1679 (2008)
   PUBMED   18799693
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL831742.6.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR13948564.2683062.1,
                                           SRR17253011.3920543.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164134, SAMN01164143
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-116               AL831742.6         182606-182721
            117-243             AL831742.6         191244-191370
            244-304             AL831742.6         191570-191630
            305-1728            AL831742.6         192707-194130
FEATURES             Location/Qualifiers
     source          1..1728
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 74.1 cM"
     gene            1..1728
                     /gene="Zfp1004"
                     /gene_synonym="Gm14139"
                     /note="zinc finger protein 1004"
                     /db_xref="GeneID:100271882"
                     /db_xref="MGI:MGI:3836251"
     exon            1..116
                     /gene="Zfp1004"
                     /gene_synonym="Gm14139"
                     /inference="alignment:Splign:2.1.0"
     CDS             114..1601
                     /gene="Zfp1004"
                     /gene_synonym="Gm14139"
                     /codon_start=1
                     /product="zinc finger protein RP23-11F9.3-001"
                     /protein_id="NP_001139335.1"
                     /db_xref="GeneID:100271882"
                     /db_xref="MGI:MGI:3836251"
                     /translation="MGRVTYDDVHVNFTREEWALLDSSQKNLYKEVMLETYRNLAAIG
                     YVWEDHNTEEHLHISRRYGRHERSHTEQLLSEFIQCDKAFAFQSHNQRQERIHTAETP
                     YECNQCGKSFARKSHLLRHKRTHTGEKPFQCYQCGKTLARNTHLLQHKKVHTGEKPYE
                     CKHCDKASVCHIGLLYHKRTHAGQRPYEWNECGKSIVYHSCIKQCKRRHTGEKPFECN
                     QCGKSFARKSNLLRHKRIHTGEKPYKCDQCGKDFASPSSLKCHKRVHTGENPYECKQC
                     GKAFARLSILRTHKRTHTGEKPFECNECGKSFARKSHLLRHKRIHTGEKPYKCDQCGK
                     DLACPNSLQYHKRVHTGEKSYECKQCGKAFAFSTSLRIHKRTHTGEKPYECNQCGKAF
                     SSPSGFLYHKQTHTGERPYECNECGKSFIHRSNFQMHKRTHTGEKPFECDQCGKSFAQ
                     NTYLLQHKRVHTGEKPYECKHCGKAFAYSNNLRVHIRTHTKYLVW"
     exon            117..243
                     /gene="Zfp1004"
                     /gene_synonym="Gm14139"
                     /inference="alignment:Splign:2.1.0"
     exon            244..304
                     /gene="Zfp1004"
                     /gene_synonym="Gm14139"
                     /inference="alignment:Splign:2.1.0"
     exon            305..1728
                     /gene="Zfp1004"
                     /gene_synonym="Gm14139"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcctgtaagt tcctgtctga atctgagccg gaaagaaggt ttctctgcgg tgtgtcctga
       61 gtgcctctgc tgggtgctct gagggagctc tgaaaagctt aaaatttccg gacatgggta
      121 gagtgaccta tgatgatgtg catgtgaact tcactcggga agagtgggct ttgctggatt
      181 cttctcagaa gaatctctac aaagaagtga tgctggagac ctacaggaat ctcgctgcta
      241 taggctatgt ttgggaagac cataatacgg aagagcatct tcatatttct agaagatatg
      301 gaaggcatga aagaagtcat actgaacagc tgctctctga gtttatccaa tgtgataaag
      361 cctttgcatt tcagagtcat aaccaaagac aagaaagaat tcatactgca gagacaccct
      421 atgaatgtaa ccaatgtggt aaatcctttg caagaaagag tcatctccta agacataaaa
      481 gaacacatac tggagagaaa ccctttcaat gttaccaatg tggtaaaact cttgctcgaa
      541 atactcatct cctacaacat aaaaaagtac acactggaga gaaaccctat gaatgtaagc
      601 attgtgacaa agcctctgta tgtcatattg gtctcctgta tcataaaaga acacatgctg
      661 gacagagacc atatgaatgg aatgaatgtg gtaaatccat tgtatatcac agttgtatta
      721 aacaatgtaa aagaagacat actggagaaa aaccctttga atgtaaccaa tgtggtaaat
      781 cctttgcaag aaagagtaat ctcctaagac ataaaagaat acatactggt gagaaacctt
      841 ataagtgtga ccagtgtggt aaagattttg caagtcccag ttctcttaaa tgccataaaa
      901 gagttcatac aggagagaat ccttatgaat gtaaacagtg tggtaaagcc tttgcacgtt
      961 taagtattct ccgaacacat aaaagaacac atactggaga aaaacccttt gaatgtaacg
     1021 aatgtggtaa atcctttgca agaaagagtc atctcctaag acataaaaga atacatactg
     1081 gtgagaaacc ttataagtgt gaccagtgtg gtaaagattt agcatgtccc aattctcttc
     1141 aataccataa aagagttcat acaggagaga aatcttatga atgtaaacaa tgtggtaaag
     1201 cctttgcatt ttcaactagt ctccgaatac ataaaagaac acatacagga gagaaaccct
     1261 atgaatgcaa tcaatgtggt aaagcctttt cgtctccaag tggattcctg tatcataaac
     1321 aaacacatac tggagagaga ccatatgaat gcaatgaatg tggtaaatcc ttcatacatc
     1381 gcagtaattt tcaaatgcat aaaagaacac atactggaga gaaacccttt gaatgtgacc
     1441 aatgtggtaa aagctttgca caaaacactt atcttttaca acataaaaga gtacacactg
     1501 gagaaaaacc ctatgaatgt aagcattgtg gcaaagcctt tgcatattct aataatctcc
     1561 gagtgcatat tagaacacat actaagtatt tagtatggta aagctttttc aaatgtcaca
     1621 agttttcata atcacgaaag agaaacccta tgagtgtatt cagtatgttt aaacctttgc
     1681 acatttctat aatcttcatc atgaacgtat tcatagaatt cagaacgt
//
