LOCUS       NM_001360578            1667 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus zinc finger, AN1-type domain 6 (Zfand6), transcript
            variant 2, mRNA.
ACCESSION   NM_001360578 XM_006508105
VERSION     NM_001360578.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1667)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1667)
  AUTHORS   Wiese,C.B., Ireland,S., Fleming,N.L., Yu,J., Valerius,M.T.,
            Georgas,K., Chiu,H.S., Brennan,J., Armstrong,J., Little,M.H.,
            McMahon,A.P. and Southard-Smith,E.M.
  TITLE     A genome-wide screen to identify transcription factors expressed in
            pelvic Ganglia of the lower urinary tract
  JOURNAL   Front Neurosci 6, 130 (2012)
   PUBMED   22988430
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1667)
  AUTHORS   Miyata,N., Okumoto,K., Mukai,S., Noguchi,M. and Fujiki,Y.
  TITLE     AWP1/ZFAND6 functions in Pex5 export by interacting with
            cys-monoubiquitinated Pex5 and Pex6 AAA ATPase
  JOURNAL   Traffic 13 (1), 168-183 (2012)
   PUBMED   21980954
  REMARK    GeneRIF: AWP1 is a novel cofactor of Pex6 involved in the
            regulation of Pex5 export during peroxisome biogenesis.
REFERENCE   4  (bases 1 to 1667)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   5  (bases 1 to 1667)
  AUTHORS   Duan,W., Sun,B., Li,T.W., Tan,B.J., Lee,M.K. and Teo,T.S.
  TITLE     Cloning and characterization of AWP1, a novel protein that
            associates with serine/threonine kinase PRK1 in vivo
  JOURNAL   Gene 256 (1-2), 113-121 (2000)
   PUBMED   11054541
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC132619.3.
            
            On Feb 7, 2018 this sequence version replaced XM_006508105.2.
            
            Transcript Variant: This variant (2) differs in the 5' UTR compared
            to variant 1. Variants 1-6 all encode the same isoform (a).
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CX225184.1, CA983929.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164135, SAMN01164139
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-212               AC132619.3         139799-140010       c
            213-383             AC132619.3         84292-84462         c
            384-492             AC132619.3         83938-84046         c
            493-593             AC132619.3         82709-82809         c
            594-638             AC132619.3         70921-70965         c
            639-752             AC132619.3         67903-68016         c
            753-1667            AC132619.3         65107-66021         c
FEATURES             Location/Qualifiers
     source          1..1667
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 48.36 cM"
     gene            1..1667
                     /gene="Zfand6"
                     /gene_synonym="3110005P07Rik; Awp1; Za20d3"
                     /note="zinc finger, AN1-type domain 6"
                     /db_xref="GeneID:65098"
                     /db_xref="MGI:MGI:1929510"
     exon            1..212
                     /gene="Zfand6"
                     /gene_synonym="3110005P07Rik; Awp1; Za20d3"
                     /inference="alignment:Splign:2.1.0"
     exon            213..383
                     /gene="Zfand6"
                     /gene_synonym="3110005P07Rik; Awp1; Za20d3"
                     /inference="alignment:Splign:2.1.0"
     exon            384..492
                     /gene="Zfand6"
                     /gene_synonym="3110005P07Rik; Awp1; Za20d3"
                     /inference="alignment:Splign:2.1.0"
     exon            493..593
                     /gene="Zfand6"
                     /gene_synonym="3110005P07Rik; Awp1; Za20d3"
                     /inference="alignment:Splign:2.1.0"
     exon            594..638
                     /gene="Zfand6"
                     /gene_synonym="3110005P07Rik; Awp1; Za20d3"
                     /inference="alignment:Splign:2.1.0"
     exon            639..752
                     /gene="Zfand6"
                     /gene_synonym="3110005P07Rik; Awp1; Za20d3"
                     /inference="alignment:Splign:2.1.0"
     exon            753..1667
                     /gene="Zfand6"
                     /gene_synonym="3110005P07Rik; Awp1; Za20d3"
                     /inference="alignment:Splign:2.1.0"
     polyA_site      1657
                     /gene="Zfand6"
                     /gene_synonym="3110005P07Rik; Awp1; Za20d3"
                     /note="major polyA site"
ORIGIN      
        1 gtcagcgcgc gttgagagcc aatcgcgggc gctcccttga ggccgcgtca caggccgagc
       61 agccaaacag aaaagtttaa taaacagcgg acggagggcc ggcggcggcg ggccgggagc
      121 gagtgggggt ttggcggcct cacctgtcct cactctcagc ggcggcgaga ggcggcggcg
      181 gcagcgcgtc cggcggagag ggccgccgcc aggtgtgcaa cagaagaaca tggctcaaga
      241 aactaatcac agccaagcac ctatgctttg ctccactggc tgcggatttt atggaaaccc
      301 tcgtacaaat ggcatgtgtt cagtatgcta taaagaacat cttcaaagac agaacagtag
      361 caatggtaga ataagcccac ctgcagcttc tgtcagcagt ctgtctgaat ccttaccagt
      421 acagtgcgca gatggcagtg tcccagacgc tcagtcagcg ctagattcta cgtcttcatc
      481 tatgcagcca ggccctgtgt caaatcagtc acttttatca gaatctgtag caccttccca
      541 agtggacagt acatctgtgg acaaagcagt atctgagaca gaagacctgc aaggacccag
      601 agcagagggc cttgttcctc ttgaatgtga tcctccatct tcagtatcag atacgacaca
      661 gcagccatct gaagagcaaa gcaagtctct tgaaaaacca aaacaaaaaa agaatcgctg
      721 tttcatgtgc aggaagaaag tgggacttac tgggtttgaa tgccggtgtg gaaatgttta
      781 ctgtggtgtg caccgttact cagatgttca caattgctct tacaattaca aagctgatgc
      841 tgctgagaaa atcagaaaag aaaatccagt agttgttggt gaaaagatcc agaagatttg
      901 aactcctgct ggaatacaaa atcctttgac tatctgcaaa ctaaacattg acttgaggtt
      961 ttttttccta gtccttggga atgtagagca ccgtatcttg catagaccct tgaatcatgc
     1021 atgtcatcag aagaatagat ttttggtttt gttttgaaaa tgactctgaa catttatttc
     1081 cattgcagtt tctgtggctg aaaagaagta ttatactttt aagatcattt taattttagt
     1141 tgagtgcaga gggcttttat aacaaatgtg gagaaattct ggagggctgt gatttttcca
     1201 gtattaaaca tgcatgcgtt gatcttgcag tttatttctc attgtgtatg tatatatagc
     1261 ttttctctgc agcacgattc ccttttgata aggcccttct gggtacaact agttatcagt
     1321 aactgaatgt atcttaatca ttacggctgc ttctgtttgt tttgttttca ttaacaaagg
     1381 ttatacatat gttagcatat agtttctttg cacccactat ttatgtctga atcatttgtc
     1441 acaggagaat atgtgctgac gagattctaa atttgtggtt tttggttcct tttatttttt
     1501 tttttaagca agggaaagaa aagctgagtg catttcactg ctgactgcaa gtttctttga
     1561 gattactgtt cattggtctg tgtgtgcaca atatgaagaa tgagctggtc attgtgcggt
     1621 atttatgttt attcaccagt ctttgattaa ataaaaagga aaactcg
//
