LOCUS       NM_001309446            3172 bp    mRNA    linear   ROD 03-JUN-2024
DEFINITION  Mus musculus zinc finger, AN1-type domain 4 (Zfand4), transcript
            variant 3, mRNA.
ACCESSION   NM_001309446 XM_006506505
VERSION     NM_001309446.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3172)
  AUTHORS   Wiese,C.B., Ireland,S., Fleming,N.L., Yu,J., Valerius,M.T.,
            Georgas,K., Chiu,H.S., Brennan,J., Armstrong,J., Little,M.H.,
            McMahon,A.P. and Southard-Smith,E.M.
  TITLE     A genome-wide screen to identify transcription factors expressed in
            pelvic Ganglia of the lower urinary tract
  JOURNAL   Front Neurosci 6, 130 (2012)
   PUBMED   22988430
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3172)
  AUTHORS   Carninci,P., Waki,K., Shiraki,T., Konno,H., Shibata,K., Itoh,M.,
            Aizawa,K., Arakawa,T., Ishii,Y., Sasaki,D., Bono,H., Kondo,S.,
            Sugahara,Y., Saito,R., Osato,N., Fukuda,S., Sato,K., Watahiki,A.,
            Hirozane-Kishikawa,T., Nakamura,M., Shibata,Y., Yasunishi,A.,
            Kikuchi,N., Yoshiki,A., Kusakabe,M., Gustincich,S., Beisel,K.,
            Pavan,W., Aidinis,V., Nakagawara,A., Held,W.A., Iwata,H., Kono,T.,
            Nakauchi,H., Lyons,P., Wells,C., Hume,D.A., Fagiolini,M.,
            Hensch,T.K., Brinkmeier,M., Camper,S., Hirota,J., Mombaerts,P.,
            Muramatsu,M., Okazaki,Y., Kawai,J. and Hayashizaki,Y.
  TITLE     Targeting a complex transcriptome: the construction of the mouse
            full-length cDNA encyclopedia
  JOURNAL   Genome Res 13 (6B), 1273-1289 (2003)
   PUBMED   12819125
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC147612.5, BY771310.1, AV282255.2, AK012639.1 and AC123548.4.
            
            On Jun 3, 2015 this sequence version replaced XM_006506505.2.
            
            Transcript Variant: This variant (3) represents the longest
            transcript and encodes the longest isoform (3).
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN00849384,
                              SAMN00849386 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            RefSeq Select criteria    :: based on conservation, expression,
                                         longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-34                AC147612.5         55550-55583         c
            35-379              BY771310.1         2-346
            380-394             AC147612.5         45930-45944         c
            395-870             AV282255.2         66-541
            871-1232            AK012639.1         496-857
            1233-1234           AC147612.5         5594-5595           c
            1235-2593           AK012639.1         858-2216
            2594-2597           AC123548.4         145708-145711       c
            2598-3166           AK012639.1         2221-2789
            3167-3172           AC123548.4         145133-145138       c
FEATURES             Location/Qualifiers
     source          1..3172
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="6"
                     /map="6 53.77 cM"
     gene            1..3172
                     /gene="Zfand4"
                     /gene_synonym="Anubl1"
                     /note="zinc finger, AN1-type domain 4"
                     /db_xref="GeneID:67492"
                     /db_xref="MGI:MGI:1914742"
     exon            1..94
                     /gene="Zfand4"
                     /gene_synonym="Anubl1"
                     /inference="alignment:Splign:2.1.0"
     exon            95..394
                     /gene="Zfand4"
                     /gene_synonym="Anubl1"
                     /inference="alignment:Splign:2.1.0"
     CDS             133..2352
                     /gene="Zfand4"
                     /gene_synonym="Anubl1"
                     /note="isoform 3 is encoded by transcript variant 3;
                     AN1-type zinc finger and ubiquitin domain-containing
                     protein-like 1; AN1-type zinc finger protein 4; AN1,
                     ubiquitin-like, homolog"
                     /codon_start=1
                     /product="AN1-type zinc finger protein 4 isoform 3"
                     /protein_id="NP_001296375.1"
                     /db_xref="CCDS:CCDS71818.2"
                     /db_xref="GeneID:67492"
                     /db_xref="MGI:MGI:1914742"
                     /translation="MFKADLGRIGIQLHTTYSRRIRKVKVMDNRKEPPFFNEDNVGPF
                     YFKLPFYDTMELFIETLTGTCFELRVSPFEAVISVKGKIQRLEGIPICQQHLIWNNME
                     LEDDYCLNDYNISEGCTLKLVLAMRGGPISTRKVPVEDPLRELAEYMDSSRDEVWEKT
                     SCNKQVTFLVYREGDQLNFFRVVDRGDGTLTPLSESLSGSVYNLYTDEDEEAEPSPSG
                     QQIIENSITMNKMKLLKAKMENMNLSKKPKKVVKVKPRPPLAPRPTSSSTAAARHRLL
                     RVLPHIGQSCLPSGNAHLPETSRNAGPSPAAQAPADRPVSSLRNELLKDDDNWEINML
                     SHSTSSIRLLPQLTHIELESDKELADSVLHLGSSLSRRTKHLSGNLLSNNEDDVVLFP
                     RSEECVADELLLPEVGAFAPFAEGTGAEQSSGVEGLGKVTPEFPLTKGDGGLRAAEQP
                     LSHVARVLSSEPGDNAVLNHREPSSHKNRLLSPLLCAAPVSLHNSLVKPQRQSKCFES
                     GNPSASTSQNTLRELDIRTIADSSFSRTARFRGVKVDSPGKRSDIISKVEARDITEMA
                     NKASKEPVGCVNNNGFLASLARSASRDSLQSTHGACRLRSSGIGLSTNFQHFQDENIR
                     KSSPQSEPTDFFLSARGIGMSGSNAAAGKRIGESIHHLPPVKAPLQTKKKIMKHCFLC
                     GKKTGLATSFECRCGNNFCASHRYAEAHGCTYDYKSAGRRYLEEANPVVNAPKLPKI"
     exon            395..470
                     /gene="Zfand4"
                     /gene_synonym="Anubl1"
                     /inference="alignment:Splign:2.1.0"
     exon            471..538
                     /gene="Zfand4"
                     /gene_synonym="Anubl1"
                     /inference="alignment:Splign:2.1.0"
     exon            539..725
                     /gene="Zfand4"
                     /gene_synonym="Anubl1"
                     /inference="alignment:Splign:2.1.0"
     exon            726..870
                     /gene="Zfand4"
                     /gene_synonym="Anubl1"
                     /inference="alignment:Splign:2.1.0"
     exon            871..2043
                     /gene="Zfand4"
                     /gene_synonym="Anubl1"
                     /inference="alignment:Splign:2.1.0"
     exon            2044..2098
                     /gene="Zfand4"
                     /gene_synonym="Anubl1"
                     /inference="alignment:Splign:2.1.0"
     exon            2099..2216
                     /gene="Zfand4"
                     /gene_synonym="Anubl1"
                     /inference="alignment:Splign:2.1.0"
     exon            2217..3172
                     /gene="Zfand4"
                     /gene_synonym="Anubl1"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2459..2464
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zfand4"
                     /gene_synonym="Anubl1"
                     /note="hexamer: AACAAG"
     polyA_site      2496
                     /gene="Zfand4"
                     /gene_synonym="Anubl1"
                     /note="major polyA site"
     regulatory      3150..3155
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zfand4"
                     /gene_synonym="Anubl1"
                     /note="hexamer: AATAAA"
     polyA_site      3167
                     /gene="Zfand4"
                     /gene_synonym="Anubl1"
                     /note="major polyA site"
ORIGIN      
        1 agcgtaggcc ggcgtctcgg gcgcgcgaac tcctatccgc ctgcgggcag gcgagcgagc
       61 gagcgggcgg acgcgaccac cggagggcga gcgggaacag aactcaaaca tgaacaacga
      121 tacatattac aaatgttcaa agctgatttg ggtagaattg gaatacagtt gcatacaaca
      181 tattccagaa gaatcagaaa agtcaaagta atggataaca gaaaagagcc tccattcttc
      241 aatgaagata acgtgggacc attttatttc aaacttcctt tctatgacac catggaactc
      301 ttcatcgaaa cgttgactgg aacatgtttt gaactaagag tttcaccctt tgaagctgtt
      361 atctctgtga aaggaaaaat tcaaagattg gaaggtattc ccatctgtca gcagcactta
      421 atttggaata acatggaact tgaagatgat tattgcttga atgattacaa catttcagaa
      481 ggttgtacct tgaagctggt attggctatg cgtggtggac cgataagtac tagaaaagtt
      541 cctgtggaag acccactcag ggagcttgct gagtacatgg attccagtcg agatgaggtc
      601 tgggaaaaga cctcctgcaa caaacaagtt acgtttttgg tataccggga aggagatcag
      661 ctgaatttct tccgtgtggt agatagaggg gatggcactt taaccccact gtctgagtct
      721 ttaagtggtt ctgtgtataa tttgtataca gatgaggatg aagaagctga gccttctcct
      781 tctgggcaac agatcattga aaactctata actatgaata agatgaagct gctgaaggct
      841 aagatggaga acatgaatct cagcaaaaag cctaagaaag ttgtcaaggt aaaacctcgc
      901 ccacctctag ctcctcggcc gaccagcagt tctacagcag cagcccggca cagattgcta
      961 agagtcctcc ctcatattgg gcagtcttgt ttaccttctg ggaatgcaca tctccctgaa
     1021 acatccagga atgcaggccc aagtcctgca gctcaggccc ctgccgatag accagtgtca
     1081 tctctcagga atgagctgct gaaggatgat gacaattggg agattaacat gctgtctcac
     1141 tccacgagta gtatcagact gcttcctcag ttgacccata tagaactgga aagtgacaaa
     1201 gagctcgcag attctgttct tcatcttgga tcatccctgt ctaggcggac caagcacctt
     1261 tcaggaaact tgttatctaa taatgaggat gacgtagtct tgtttccacg gtcagaagaa
     1321 tgtgtagctg atgagttgct cctgccagaa gtaggtgctt ttgctccatt tgcagaagga
     1381 accggtgccg agcagagcag tggtgtagaa gggttaggga aggtaactcc agagttccca
     1441 ctcactaaag gtgatggagg actgagggca gcggagcagc ctctgagcca tgtggcaaga
     1501 gtgctgagca gtgagccagg agacaatgca gttcttaacc accgagagcc aagctctcac
     1561 aagaacagac tcctgtcccc tcttctctgt gctgcaccag tgtcactaca taattctctg
     1621 gtgaagccac agagacagtc aaaatgtttt gagtcaggca acccctcagc gtctacttca
     1681 caaaacaccc tgcgggaatt ggacattcga accatagcag attcttcttt ctctaggact
     1741 gctcgcttcc gtggtgttaa agtcgattcg cctggaaaaa ggtctgatat tatttctaaa
     1801 gtggaagccc gagatattac agaaatggct aataaagctt ccaaagagcc tgttggttgt
     1861 gtaaacaata atggcttttt ggcttcactg gcacggagtg caagcagaga cagtttgcag
     1921 agcacccatg gggcatgcag gcttcggtcc tctggaattg gtttgtctac aaacttccag
     1981 cattttcagg atgaaaacat taggaaaagt tctccccagt cagaacctac agattttttt
     2041 ctatctgccc gcggtattgg aatgagtgga agtaatgcag cagcagggaa gagaatagga
     2101 gaaagcatcc accaccttcc acctgtgaaa gcccctcttc aaacaaagaa gaaaataatg
     2161 aaacattgtt ttctttgtgg aaagaaaaca ggactggcca ctagctttga atgcagatgt
     2221 ggaaacaact tctgtgcatc tcaccgttat gcagaagctc acggctgcac ttacgactac
     2281 aaaagtgcag ggaggagata cttagaggag gccaaccctg tggtcaacgc accaaaactt
     2341 cccaaaatct aattcttctc tgcgctttac tgctttgcct gaggaatcga ttatatttga
     2401 cagagaaata ttgtttagac tgcattattt ttgttcgact ccaaaagatt tgccaaataa
     2461 caagcgcaca tagtgtgcac tgttggagac tgaaaatgcc tactgtattg atgtctttat
     2521 tctttggtga atcaaaagtt ttaaaagtag ttttaaaaac tttacactat aatgatttag
     2581 ttttgttatt gcatgtctgt gttaagtatt ttacatttga gattggaatt attagacaaa
     2641 tcttccaaag atgcacttta ggaagttgct attggccaca taactaggct tccatgttgt
     2701 acagcagtga gtggttccat atggctctgt tcaaactgag cacattttgc cttttttctt
     2761 tcttttcttg gggggatggg ataaatggga tattttttaa agaataaatc ccgcatgtga
     2821 aagtttatga aggttactag caggttcttt ttaaaagaac atttggtttt ttttaaacat
     2881 gtgattttta acacatatat ttcttccata ttcagattgg cattcatata tgtatccatt
     2941 ctgtagaaca catcatgtta atatagtata catttaaaaa aatactactt tttaaatggt
     3001 agttttaaaa taacagtatc ttacttgttg ccattgaaaa aagaatccaa cttttcactt
     3061 tcaaaaatgg ctatatatat atttttttaa agtctcacaa acttggttta tttttcttac
     3121 atattgagtg cttttacagg ggaaattcaa ataaatattc aacttcacta tg
//
