LOCUS       NM_001356265            3534 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus zinc finger, AN1-type domain 3 (Zfand3), transcript
            variant 2, mRNA.
ACCESSION   NM_001356265 XM_006524027
VERSION     NM_001356265.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3534)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 3534)
  AUTHORS   Gineste,C., De Winter,J.M., Kohl,C., Witt,C.C., Giannesini,B.,
            Brohm,K., Le Fur,Y., Gretz,N., Vilmen,C., Pecchi,E., Jubeau,M.,
            Cozzone,P.J., Stienen,G.J., Granzier,H., Labeit,S.,
            Ottenheijm,C.A., Bendahan,D. and Gondin,J.
  TITLE     In vivo and in vitro investigations of heterozygous nebulin
            knock-out mice disclose a mild skeletal muscle phenotype
  JOURNAL   Neuromuscul Disord 23 (4), 357-369 (2013)
   PUBMED   23375831
REFERENCE   3  (bases 1 to 3534)
  AUTHORS   Tkatchenko,T.V., Moreno-Rodriguez,R.A., Conway,S.J.,
            Molkentin,J.D., Markwald,R.R. and Tkatchenko,A.V.
  TITLE     Lack of periostin leads to suppression of Notch1 signaling and
            calcific aortic valve disease
  JOURNAL   Physiol Genomics 39 (3), 160-168 (2009)
   PUBMED   19723774
REFERENCE   4  (bases 1 to 3534)
  AUTHORS   Cobellis,G., Nicolaus,G., Iovino,M., Romito,A., Marra,E.,
            Barbarisi,M., Sardiello,M., Di Giorgio,F.P., Iovino,N., Zollo,M.,
            Ballabio,A. and Cortese,R.
  TITLE     Tagging genes with cassette-exchange sites
  JOURNAL   Nucleic Acids Res 33 (4), e44 (2005)
   PUBMED   15741177
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 3534)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   6  (bases 1 to 3534)
  AUTHORS   Piao,Y., Ko,N.T., Lim,M.K. and Ko,M.S.
  TITLE     Construction of long-transcript enriched cDNA libraries from
            submicrogram amounts of total RNAs by a universal PCR amplification
            method
  JOURNAL   Genome Res 11 (9), 1553-1558 (2001)
   PUBMED   11544199
REFERENCE   7  (bases 1 to 3534)
  AUTHORS   de Luis,O., Lopez-Fernandez,L.A. and del Mazo,J.
  TITLE     Tex27, a gene containing a zinc-finger domain, is up-regulated
            during the haploid stages of spermatogenesis
  JOURNAL   Exp Cell Res 249 (2), 320-326 (1999)
   PUBMED   10366431
REFERENCE   8  (bases 1 to 3534)
  AUTHORS   Lopez-Fernandez,L.A., Parraga,M. and del Mazo,J.
  TITLE     Tex261, a novel gene presumably related but distinct from
            steroidogenic acute regulatory (StAR) gene, is regulated during the
            development of germ cells
  JOURNAL   Biochem Biophys Res Commun 242 (3), 565-569 (1998)
   PUBMED   9464256
REFERENCE   9  (bases 1 to 3534)
  AUTHORS   Yamabhai,M. and Kay,B.K.
  TITLE     Examining the specificity of Src homology 3 domain--ligand
            interactions with alkaline phosphatase fusion proteins
  JOURNAL   Anal Biochem 247 (1), 143-151 (1997)
   PUBMED   9126384
REFERENCE   10 (bases 1 to 3534)
  AUTHORS   Lopez-Fernandez,L.A. and del Mazo,J.
  TITLE     Characterization of genes expressed early in mouse spermatogenesis,
            isolated from a subtractive cDNA library
  JOURNAL   Mamm Genome 7 (9), 698-700 (1996)
   PUBMED   8703127
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CV561920.1, BC100559.1, BC083124.1 and AC125044.3.
            
            On Sep 27, 2017 this sequence version replaced XM_006524027.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CV561920.1, SRR10662772.2811554.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-197               CV561920.1         1-197
            198-1120            BC100559.1         1-923
            1121-2731           BC083124.1         1007-2617
            2732-3534           AC125044.3         113784-114586       c
FEATURES             Location/Qualifiers
     source          1..3534
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 15.59 cM"
     gene            1..3534
                     /gene="Zfand3"
                     /gene_synonym="TEG-27; Tex27"
                     /note="zinc finger, AN1-type domain 3"
                     /db_xref="GeneID:21769"
                     /db_xref="MGI:MGI:1096572"
     exon            1..270
                     /gene="Zfand3"
                     /gene_synonym="TEG-27; Tex27"
                     /inference="alignment:Splign:2.1.0"
     CDS             200..883
                     /gene="Zfand3"
                     /gene_synonym="TEG-27; Tex27"
                     /note="isoform 2 is encoded by transcript variant 2;
                     AN1-type zinc finger protein 3; testis-expressed protein
                     27"
                     /codon_start=1
                     /product="AN1-type zinc finger protein 3 isoform 2"
                     /protein_id="NP_001343194.1"
                     /db_xref="CCDS:CCDS89053.1"
                     /db_xref="GeneID:21769"
                     /db_xref="MGI:MGI:1096572"
                     /translation="MGDAGSERSKAPSLPPRCPCGFWGSSKTMNLCSKCFADFQKKQP
                     DDDSTPSTSNSQSDLFSEETTSDNNNTSVTTPTLSPSQQSLPTELNVTSPSTEECGPC
                     TDTAHVSLITPTKRSCGADSQSENEASPVKRPRLVENPERPEESGRSKQKSRRRCFQC
                     QTKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHMGRGREEAIMKMVKLDRKVGRS
                     CQRIGEGCS"
     exon            271..311
                     /gene="Zfand3"
                     /gene_synonym="TEG-27; Tex27"
                     /inference="alignment:Splign:2.1.0"
     exon            312..494
                     /gene="Zfand3"
                     /gene_synonym="TEG-27; Tex27"
                     /inference="alignment:Splign:2.1.0"
     exon            495..560
                     /gene="Zfand3"
                     /gene_synonym="TEG-27; Tex27"
                     /inference="alignment:Splign:2.1.0"
     exon            561..728
                     /gene="Zfand3"
                     /gene_synonym="TEG-27; Tex27"
                     /inference="alignment:Splign:2.1.0"
     exon            729..3534
                     /gene="Zfand3"
                     /gene_synonym="TEG-27; Tex27"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1103..1108
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zfand3"
                     /gene_synonym="TEG-27; Tex27"
                     /note="hexamer: ATTAAA"
     polyA_site      1120
                     /gene="Zfand3"
                     /gene_synonym="TEG-27; Tex27"
                     /note="major polyA site"
     regulatory      2713..2718
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zfand3"
                     /gene_synonym="TEG-27; Tex27"
                     /note="hexamer: ATTAAA"
     polyA_site      2731
                     /gene="Zfand3"
                     /gene_synonym="TEG-27; Tex27"
                     /note="major polyA site"
ORIGIN      
        1 ggtgcggccc gcctccagct gacccgcctg gaatcccggc tcggagctcc ggactcgcgc
       61 ccgcctgcgc gcccgctccc tccccctccc cccgccccgc gccccccgcc gctgccgccg
      121 ccgcctccgc ttcctccgag gggggctcag gcccagccgc cgtcgcctcc gagctccgcc
      181 gccgccgccg ccgagcacca tgggagacgc cgggagcgag cgcagcaaag cgcccagcct
      241 gccgcctcgc tgtccctgcg gcttctgggg gtccagcaag actatgaatc tctgttccaa
      301 atgctttgct gattttcaaa agaaacaacc agatgatgat tccaccccaa gtacaagtaa
      361 cagccaatca gatttgtttt ccgaagagac caccagtgac aacaacaata cctctgtaac
      421 cacgccaact cttagtccca gccagcagtc gctcccgaca gaactgaatg taacttcacc
      481 gagtacagag gaatgtgggc catgcacaga cacagctcat gtctcattaa ttacaccaac
      541 caaaagatcc tgtggtgcag attcacagtc cgagaacgag gcctcacccg tgaagcgacc
      601 gcgactagta gagaaccccg agcggcctga ggagagcggc cggtcgaagc agaagagccg
      661 gcgccgctgc ttccagtgcc agaccaagct ggagctggtg cagcaggaac tgggatcctg
      721 tcgctgtggc tacgtgttct gtatgttaca tcgcctccca gagcagcacg actgtacgtt
      781 cgaccacatg ggccgtggcc gcgaggaagc catcatgaaa atggtgaaac tggaccggaa
      841 agtggggcgc tcctgccagc gcatcgggga ggggtgctcc tgaaggccag gcacggccac
      901 cacacgacgc tgttcttagt tcactaatgt tagccttatt taggacaaag tcagccagac
      961 accttgtact gggcacgcgt cagaccacag ccggccgttt cctttcttta gccagccgtc
     1021 ctggtactgt agcttagggg ttgatggtgg atgaaattga tttctggctg gttactaagg
     1081 tgcctgctag ccattgtata aaattaaaac atgaagaata tttgttttga gcatggctag
     1141 tggatttaca acaacacatg cctgtcactg ctggagtcag acttacaaaa gccttaagcg
     1201 gaaagtgtcc agaccaggct gagtcagtaa aggaggcgcg ggcctcgacg cccacgctgg
     1261 cagctttgac agaaactctt ccgtggtcgg cctttcacct cttcactttc gcttggtccc
     1321 agcaggacct gatggccacg cgtgccttgg ccacaggaag ctgccgagac tggccatgtg
     1381 gctgggctag gctgtgccct ccctctccct cagcgctgga agtcggggtg gggcaggttc
     1441 tgtggaagaa gttttttgcc tgttacggga aactcatcac acaagaagag acaacttcac
     1501 tttgaacatt agatccactc aagattagtc cacgaatgat ccccacctct tctgcacagg
     1561 atccgtggtc gtgaccccac tggctctggc tgtagcttgc caagggcact ggcgttgctt
     1621 gtgacagccc tggggctgag gcctgcacct gggccttggc aaccagattt ctttctttgg
     1681 agtttgaaaa gctgtctcct ggccgcatgg ggtgagcgca caggggagcc gctgctgcca
     1741 tcccttgcct ccatgtgttt ctatgcagcc atagtttgag gacagccagg cacccacctc
     1801 aggacaagtt caggaaggga agacagtgga ctgtacggga cctggtgtgt gtggtggtgt
     1861 gagtggtggg gctgtgggtg agagatcgct ctcagtctgg gcctgagtgg ggctgggtag
     1921 aaaacattaa cagtcaggtg ggctgggcgg ggcgggggag attctaggag tcccttgaaa
     1981 gcctggatca ggtcaaagtg ccacacaggt gccacctgtc ccagattgtg gcttggcatg
     2041 gagctgccca cgtctggctg ctgatgaacg gtttagccca gtgacttccc tctgtgtagc
     2101 tgagcaaggt ctgctctcca gaggaacaca tctgcattga acacatctgc aagtacaatg
     2161 tcttgatcca aaacagcaaa taggaaatca tgttcttccc accctgcacc ccatctgcac
     2221 ccccacaggg acccagtgca gaatctccag ccttaattct tgcttcagga cccaaaccag
     2281 cgcctcactc tagggtagcc cagggcgcag gtgccaggtc tgcctagcgt ttaccactgt
     2341 tgttaagcca cagcccttgg ccaccacatg gccatcctca gtgaggcgcc atgaaccctt
     2401 cttaggccct caggtcccca tagcactggg agggggcgct ggggaccatg tgcccaggga
     2461 ctgcagccag gttcactctg ctgggagagc tggctggggg gaagggcttg ttccctacag
     2521 tgtctgttct gtgaagtttg ttacgtgtaa gggaagctga agttcttgta tctttaaaga
     2581 ggaaatctta tttaaccctt tgtgtcctag attgacttac acacatagcc tagagctcag
     2641 ttttagttta acattgtgaa aatattaaaa gaatcttgta actttattct tttttttctc
     2701 ctgctgaaac aaattaaacc aatcatatgg acatttggat tgtctgtgtt ggccgctcac
     2761 ctagtgcccc aggatgtcca ggaagggagg gcagcgcctc cctgcttgca gcagggctcc
     2821 atagtacctg gggtgacttg cccagtgcgt gcccaggccc agcagccgca tccctgtgtg
     2881 gatgccagaa ggtcctagtg caggcatggc aggggtgccg tgtctctggg accatctctt
     2941 gaggacccca ggtatgggtg ggttgggtgt ctggggactt gagtctaaca cgggtgaggg
     3001 caggcgggat gaatgctgct ctctcttggg tggctgcagg gatgagcacg tgacttgacg
     3061 gtcaggagac aactcttttt tgaaagttct acctcaggca gaggaatggc acctacacca
     3121 ccccacagtt gccagagggt gatggagaat ggccaggaag ttcagagtgc ttggcacagg
     3181 gcaggagaaa gccagcgggc tagtctgatg gctggagtgt ggccaagcca ggtcagaggc
     3241 tctctgatgg ccacagagag aaaaggccct ggggaactct gagaagcacc cctccccgcc
     3301 acctccaccc cctatgagca cagaatgtag cgcaggaagg ccctgtcctc tgcagccatc
     3361 acagcgcctg tccaagcgag cgagggagga ggaacctctg tctgaggttc tttccttgca
     3421 ctggaaaggg gggcgcctta cttaccttct aatccagggg tctggagaac gtctcagatc
     3481 ctgaagtgta tgtagaatat taagaaaaac aggaaataaa tgtgttatac cctc
//
