LOCUS       NM_001399060            1646 bp    mRNA    linear   ROD 12-JUN-2024
DEFINITION  Mus musculus zinc finger, AN1-type domain 1 (Zfand1), transcript
            variant 5, mRNA.
ACCESSION   NM_001399060 XM_011248146
VERSION     NM_001399060.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1646)
  AUTHORS   Sa-Moura,B., Funakoshi,M., Tomko,R.J. Jr., Dohmen,R.J., Wu,Z.,
            Peng,J. and Hochstrasser,M.
  TITLE     A conserved protein with AN1 zinc finger and ubiquitin-like domains
            modulates Cdc48 (p97) function in the ubiquitin-proteasome pathway
  JOURNAL   J Biol Chem 288 (47), 33682-33696 (2013)
   PUBMED   24121501
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC123726.11.
            
            On Dec 30, 2021 this sequence version replaced XM_011248146.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7345562.5026303.1,
                                           SRR7652917.260875.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849386, SAMN00849388
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-155               AC123726.11        63375-63529
            156-195             AC123726.11        67494-67533
            196-323             AC123726.11        68461-68588
            324-415             AC123726.11        68672-68763
            416-537             AC123726.11        69776-69897
            538-693             AC123726.11        73549-73704
            694-1646            AC123726.11        73793-74745
FEATURES             Location/Qualifiers
     source          1..1646
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="3"
                     /map="3 2.62 cM"
     gene            1..1646
                     /gene="Zfand1"
                     /gene_synonym="2310008M20Rik"
                     /note="zinc finger, AN1-type domain 1"
                     /db_xref="GeneID:66361"
                     /db_xref="MGI:MGI:1913611"
     exon            1..155
                     /gene="Zfand1"
                     /gene_synonym="2310008M20Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             28..864
                     /gene="Zfand1"
                     /gene_synonym="2310008M20Rik"
                     /EC_number="3.1.3.25"
                     /note="isoform 5 is encoded by transcript variant 5;
                     AN1-type zinc finger protein 1; zinc finger
                     AN1-type-containing protein 1"
                     /codon_start=1
                     /product="AN1-type zinc finger protein 1 isoform 5"
                     /protein_id="NP_001385989.1"
                     /db_xref="GeneID:66361"
                     /db_xref="MGI:MGI:1913611"
                     /translation="MAELDIGQHCQVQHCRQRGDAGSPIFIRGRPGPGSDGRGGGGGL
                     EHRSKDSHGCSEVNVVKERPKTDEHKSYSCSFKGCTDVELVAVICPYCEKNFCLRHRH
                     QSDHDCEKLEVAKPRMAATQKLVRDIVDAKTGGAASKGRKGAKSSGTAAKVALMKLKM
                     HADGDKSLPQTERTYFQVYLPKGSKEKSKAMFFCLRWSIGKVVDFAASLANLRNENNK
                     LTAKKLRLCHVPSGEALPLDHTLERWITKEECPLYNGGNVILEYLNDEEQFLKNVDSY
                     LE"
     exon            156..195
                     /gene="Zfand1"
                     /gene_synonym="2310008M20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            196..323
                     /gene="Zfand1"
                     /gene_synonym="2310008M20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            324..415
                     /gene="Zfand1"
                     /gene_synonym="2310008M20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            416..537
                     /gene="Zfand1"
                     /gene_synonym="2310008M20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            538..693
                     /gene="Zfand1"
                     /gene_synonym="2310008M20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            694..1646
                     /gene="Zfand1"
                     /gene_synonym="2310008M20Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1597..1602
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zfand1"
                     /gene_synonym="2310008M20Rik"
                     /note="hexamer: AATAAA"
     regulatory      1632..1637
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zfand1"
                     /gene_synonym="2310008M20Rik"
                     /note="hexamer: AACAAA"
     polyA_site      1641
                     /gene="Zfand1"
                     /gene_synonym="2310008M20Rik"
                     /note="major polyA site"
     polyA_site      1646
                     /gene="Zfand1"
                     /gene_synonym="2310008M20Rik"
ORIGIN      
        1 gccccctgcc cttgcggcgg tggaaagatg gcggagttgg acattgggca gcactgccag
       61 gtgcagcact gccggcagcg aggtgacgct ggaagcccca ttttcatccg cgggagacct
      121 gggccgggtt ctgacggccg gggcggtggc ggcggccttg aacacagaag caaggactct
      181 catggttgtt ctgaggtgaa tgtagtcaag gagagaccaa agacagatga acacaaatct
      241 tactcatgct ctttcaaggg ctgcactgac gtagagcttg tggcagtgat ctgtccttac
      301 tgtgagaaga acttttgcct gagacaccgt catcagtcgg atcatgactg tgaaaagctg
      361 gaagtcgcaa agcctcgaat ggctgccaca cagaaacttg tcagagacat tgtcgatgcc
      421 aagacaggag gggcagcaag taagggacgg aaaggcgcaa aaagtagcgg aacagcggcg
      481 aaggtggcgc tgatgaagct aaagatgcac gctgatgggg ataagtccct gccgcagaca
      541 gaaagaacat acttccaggt ctacttgcca aaggggagca aggaaaaaag caaagccatg
      601 ttcttttgcc tgcggtggag catcgggaag gttgtggact ttgcagcttc tctcgctaat
      661 ctcaggaatg aaaacaacaa gctgacagcg aagaagctga ggctgtgtca tgtcccttca
      721 ggagaagccc tgccattgga tcacacattg gaaaggtgga tcacgaagga ggagtgccct
      781 ttatataatg gaggaaatgt tatcttggaa tatcttaacg atgaagaaca gtttttaaaa
      841 aatgttgact cttacttgga atagtcattc aaggattcaa gccagcagaa tccttataag
      901 cagaaaccac tatcagtaga cagtcagctt tgttgtgttt gttttgtttg ttttactaca
      961 gatacttttt taaaactctc aaagttgctg tcttagaatt tatttccatt aggtcctaat
     1021 ttacaccagt agttttctac taggttccat gttggtgttt aattatgtgt tgacaattac
     1081 tggcgaagta ttttattagc tgtttctggg ttaggctgta gaaatatcag caaaagtgtc
     1141 tttcctggta gactaatggc agccattgac tggctgctgt gtcacagcct gtactgcctt
     1201 ccctccgaga tcccgctcac acaacaccca cctttttgtg attttgccat tctacggcag
     1261 aggaagctgc agatggcaga ctctttggag gggtcgtaca agtggtactt accaatatta
     1321 tttaaaggaa gtcctatgat taaacctcat attatgtcca gaatacatag ccttactgga
     1381 tacctaaatc atgacgcatg aattgcagac tcttgcagat cctctcattc agtcttccag
     1441 gataaggtgt gtgataagac accacatacc taagaaggga acgtaatttt tttggtatca
     1501 tgtaattgca ctggatatgt ttctggtaag gagttttctc tagtaggatt caactttttg
     1561 tgtgtgtgaa tgtattacaa atgagaactt cactcgaata aactgatttt gttacagtct
     1621 atgcttcctg taacaaagcg agacaa
//
