LOCUS       NM_027476               2562 bp    mRNA    linear   ROD 29-JUL-2024
DEFINITION  Mus musculus zinc finger, DHHC domain containing 24 (Zdhhc24),
            transcript variant 1, mRNA.
ACCESSION   NM_027476
VERSION     NM_027476.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2562)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2562)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 2562)
  AUTHORS   Dickinson,M.E., Flenniken,A.M., Ji,X., Teboul,L., Wong,M.D.,
            White,J.K., Meehan,T.F., Weninger,W.J., Westerberg,H., Adissu,H.,
            Baker,C.N., Bower,L., Brown,J.M., Caddle,L.B., Chiani,F., Clary,D.,
            Cleak,J., Daly,M.J., Denegre,J.M., Doe,B., Dolan,M.E., Edie,S.M.,
            Fuchs,H., Gailus-Durner,V., Galli,A., Gambadoro,A., Gallegos,J.,
            Guo,S., Horner,N.R., Hsu,C.W., Johnson,S.J., Kalaga,S., Keith,L.C.,
            Lanoue,L., Lawson,T.N., Lek,M., Mark,M., Marschall,S., Mason,J.,
            McElwee,M.L., Newbigging,S., Nutter,L.M., Peterson,K.A.,
            Ramirez-Solis,R., Rowland,D.J., Ryder,E., Samocha,K.E.,
            Seavitt,J.R., Selloum,M., Szoke-Kovacs,Z., Tamura,M., Trainor,A.G.,
            Tudose,I., Wakana,S., Warren,J., Wendling,O., West,D.B., Wong,L.,
            Yoshiki,A., MacArthur,D.G., Tocchini-Valentini,G.P., Gao,X.,
            Flicek,P., Bradley,A., Skarnes,W.C., Justice,M.J., Parkinson,H.E.,
            Moore,M., Wells,S., Braun,R.E., Svenson,K.L., de Angelis,M.H.,
            Herault,Y., Mohun,T., Mallon,A.M., Henkelman,R.M., Brown,S.D.,
            Adams,D.J., Lloyd,K.C., McKerlie,C., Beaudet,A.L., Bucan,M. and
            Murray,S.A.
  CONSRTM   International Mouse Phenotyping Consortium; Jackson Laboratory;
            Infrastructure Nationale PHENOMIN, Institut Clinique de la Souris
            (ICS); Charles River Laboratories; MRC Harwell; Toronto Centre for
            Phenogenomics; Wellcome Trust Sanger Institute; RIKEN BioResource
            Center
  TITLE     High-throughput discovery of novel developmental phenotypes
  JOURNAL   Nature 537 (7621), 508-514 (2016)
   PUBMED   27626380
  REMARK    Erratum:[Nature. 2017 Nov 16;551(7680):398. doi:
            10.1038/nature24643. PMID: 29144450]
REFERENCE   4  (bases 1 to 2562)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
REFERENCE   5  (bases 1 to 2562)
  AUTHORS   Guo,G., Huss,M., Tong,G.Q., Wang,C., Li Sun,L., Clarke,N.D. and
            Robson,P.
  TITLE     Resolution of cell fate decisions revealed by single-cell gene
            expression analysis from zygote to blastocyst
  JOURNAL   Dev Cell 18 (4), 675-685 (2010)
   PUBMED   20412781
REFERENCE   6  (bases 1 to 2562)
  AUTHORS   Fukata,M., Fukata,Y., Adesnik,H., Nicoll,R.A. and Bredt,D.S.
  TITLE     Identification of PSD-95 palmitoylating enzymes
  JOURNAL   Neuron 44 (6), 987-996 (2004)
   PUBMED   15603741
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC141437.4 and AK171568.1.
            
            On Dec 9, 2009 this sequence version replaced NM_027476.2.
            
            Transcript Variant: This variant (1) represents the longest
            transcript and encodes the longer isoform (a).
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC071194.1, AK170706.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-17                AC141437.4         32046-32062         c
            18-2553             AK171568.1         2-2537
            2554-2562           AC141437.4         25333-25341         c
FEATURES             Location/Qualifiers
     source          1..2562
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="19"
                     /map="19 4.13 cM"
     gene            1..2562
                     /gene="Zdhhc24"
                     /gene_synonym="5730496N17Rik; Leng4"
                     /note="zinc finger, DHHC domain containing 24"
                     /db_xref="GeneID:70605"
                     /db_xref="MGI:MGI:1917855"
     exon            1..362
                     /gene="Zdhhc24"
                     /gene_synonym="5730496N17Rik; Leng4"
                     /inference="alignment:Splign:2.1.0"
     exon            363..640
                     /gene="Zdhhc24"
                     /gene_synonym="5730496N17Rik; Leng4"
                     /inference="alignment:Splign:2.1.0"
     exon            641..2562
                     /gene="Zdhhc24"
                     /gene_synonym="5730496N17Rik; Leng4"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1653..1658
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zdhhc24"
                     /gene_synonym="5730496N17Rik; Leng4"
                     /note="hexamer: AATAAA"
     polyA_site      1675
                     /gene="Zdhhc24"
                     /gene_synonym="5730496N17Rik; Leng4"
     regulatory      2536..2541
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zdhhc24"
                     /gene_synonym="5730496N17Rik; Leng4"
                     /note="hexamer: AATAAA"
     polyA_site      2560
                     /gene="Zdhhc24"
                     /gene_synonym="5730496N17Rik; Leng4"
                     /note="major polyA site"
ORIGIN      
        1 ggagacgtca gttcgctgct aggccctccc caatgcggaa gcagtgggat cccagcgatc
       61 ggaaagccgg tgggtccgac catgggggag tcctgggcag ctcggggcgc agaaggagcg
      121 cccgcgcgga tgccactggt actcaccgcg ctgtgggccg ccgtcgtggt cctggagctg
      181 gcctacgtga tggtgctggg gcctgggcca cccccgctgg gaccactggc ccgggccttg
      241 caactggcgc tagctgctta tcagctgctc aatctgctgg gcaacgtggt gctcttcctc
      301 cgctcggatc ccagcattcg gggggtgatg ctggctggcc gcggcctggg acagggctgg
      361 gcttactgtt accagtgcca aagccaggtg ccacctcgta gtggtcactg ctctgcctgc
      421 cgtgtgtgca tcctacgtcg tgaccatcac tgtcgcctat tgggctgctg tgtgggcttc
      481 cataattacc ggcccttcct gtgtctcctg cttcactctg ctggtgtcct gctccacatc
      541 tcagtgctgc taggccccgc cctgtcagcc ttgctgcagg cccactcagc cctctacaca
      601 gtggctctcc tgctgttgcc ctggctcatg ctactcacag gcaaagtgtc tctggcccag
      661 tttgccctgg cctttgtggt ggacacgtgt gtggcaggtg cactgttgtg tggtgctggg
      721 ctgcttttcc atgggatgct gctgcttcgg ggacagacca cctgggagtg ggctcggggt
      781 caccactgct atgacctggg cacctgccac aacctgcagg cagccctggg gcctcgctgg
      841 gccctagtct ggttctggcc ttttctagcc tctcctttgc ctggagatgg gatctctttc
      901 cagactccag gtgatgtggg tcttgtgact tcctgagtcc aggtagagcc agaactgaac
      961 agggcagagg atcgaactga gaacttttta gcttcatgcc agccgcagga ggaaggcccg
     1021 attgcccctt catgtgtgta gtgggcagct ttagctcctt ctttgaacct gcccaatgtg
     1081 ggctcttcta tctctgtagt tggccctttt ggcagaggat ggtctagcaa gggggctact
     1141 tggcctgacc gactgcccct ctgcagggta gtaaagtgcc aacctggttc ttggcctcct
     1201 ccatctttgc tgggttccta tacctcactt tgttgttttg gttgctgttt cccaggtccc
     1261 atgtcaggcc tggagactac agaaggcctg agatcccaat gggccagggc tctgccacct
     1321 ctggccctgg aagggtgtgg tgggatccag gcaaggagag tccagacgtg ctctagagat
     1381 tagcactaga aacatgtcta cagcaggggg tgagggagct ctagcagctc acccgtatgc
     1441 gggaccacag ttagaatctt tgttctgtaa gaaatagaaa agccctgcta ggccatgtga
     1501 caagattgct ggtagaaatg tagaccttac tggcctcaaa ctcaaggaag tccactggct
     1561 tctcctttct gagtgctagg atgaaagaca tttgccacca tgactggcct aagagattag
     1621 atttgaaccc ttccagctag attgttttat taaataaatt cattatgaaa ttctatttat
     1681 tattgtaaag agaattaaaa aggacccaat cttaggcctg gacagagaga ccagaccaca
     1741 ggagtctcag gctgtgtccc ttgggggctc tgctgtggct gtagatggcc ttgcacaccc
     1801 ttcacagaga ggcctggtct ttggtctttg gtctttgaat ctgctttact tttgcacagc
     1861 tgaagtgaaa aaggaacatc agggccaaaa taactagctt ccaagcactc cagagttcat
     1921 gaagggtaat tttaacattt gtttgtgtgt gtgtgtgtgt gtgtgtgtga gagagagaga
     1981 gagagagcga gagagagagc atggtgtatg catggacatg taatgtgtgg gtaccattgg
     2041 caacaagata ttgtttctga gatgtgtcca aattactgca tgtagtgata tggtcctctt
     2101 tttctcttcc acatggagat ctgaatatac cttaaccaaa tcttttttat tttcttccac
     2161 tggtcatttt cctacctcac cccgacccca tgtacactcc ccccacgtag tgggaatcac
     2221 gccctaggag cccttgctct tccataccag tctgagaatc agctcctcag atctcaccaa
     2281 tgaaagccca ccttgaaata agcgggatcc agtagaccgt gttagcttgt agaaagtaag
     2341 cgtctgtgaa gtcaaccttt cagatcacga acatggttta tctcctcaat gaatagtttt
     2401 acttttgaga cagggtctca ctttgtagct gtggttagcc tagaaattac tatttagacc
     2461 agattggcct caaactctgc ctcctaagca atgagattaa atatgtgcac caccatgcca
     2521 gccttcaata ttttcaataa agcttttttt ttctgacaaa ga
//
