LOCUS       NM_028031               2407 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus zinc finger, DHHC domain containing 13 (Zdhhc13),
            mRNA.
ACCESSION   NM_028031
VERSION     NM_028031.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2407)
  AUTHORS   Knupp,D., Cooper,D.A., Saito,Y., Darnell,R.B. and Miura,P.
  TITLE     NOVA2 regulates neural circRNA biogenesis
  JOURNAL   Nucleic Acids Res 49 (12), 6849-6862 (2021)
   PUBMED   34157123
REFERENCE   2  (bases 1 to 2407)
  AUTHORS   Chen,L.Y., Lin,K.R., Chen,Y.J., Chiang,Y.J., Ho,K.C., Shen,L.F.,
            Song,I.W., Liu,K.M., Yang-Yen,H.F., Chen,Y.J., Chen,Y.T., Liu,F.T.
            and Yen,J.J.Y.
  TITLE     Palmitoyl Acyltransferase Activity of ZDHHC13 Regulates Skin
            Barrier Development Partly by Controlling PADi3 and TGM1 Protein
            Stability
  JOURNAL   J Invest Dermatol 140 (5), 959-970 (2020)
   PUBMED   31669413
  REMARK    GeneRIF: Palmitoyl Acyltransferase Activity of ZDHHC13 Regulates
            Skin Barrier Development Partly by Controlling PADi3 and TGM1
            Protein Stability.
REFERENCE   3  (bases 1 to 2407)
  AUTHORS   Kang,R., Wang,L., Sanders,S.S., Zuo,K., Hayden,M.R. and
            Raymond,L.A.
  TITLE     Altered Regulation of Striatal Neuronal N-Methyl-D-Aspartate
            Receptor Trafficking by Palmitoylation in Huntington Disease Mouse
            Model
  JOURNAL   Front Synaptic Neurosci 11, 3 (2019)
   PUBMED   30846936
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 2407)
  AUTHORS   Napoli,E., Song,G., Liu,S., Espejo,A., Perez,C.J., Benavides,F. and
            Giulivi,C.
  TITLE     Zdhhc13-dependent Drp1 S-palmitoylation impacts brain
            bioenergetics, anxiety, coordination and motor skills
  JOURNAL   Sci Rep 7 (1), 12796 (2017)
   PUBMED   29038583
  REMARK    GeneRIF: Zdhhc13-dependent Drp1 S-palmitoylation, which acting
            alone or in concert, enables the normal occurrence of the
            fission-fusion process.
            Publication Status: Online-Only
REFERENCE   5  (bases 1 to 2407)
  AUTHORS   Shen,L.F., Chen,Y.J., Liu,K.M., Haddad,A.N.S., Song,I.W.,
            Roan,H.Y., Chen,L.Y., Yen,J.J.Y., Chen,Y.J., Wu,J.Y. and Chen,Y.T.
  TITLE     Role of S-Palmitoylation by ZDHHC13 in Mitochondrial function and
            Metabolism in Liver
  JOURNAL   Sci Rep 7 (1), 2182 (2017)
   PUBMED   28526873
  REMARK    Publication Status: Online-Only
REFERENCE   6  (bases 1 to 2407)
  AUTHORS   Guo,G., Huss,M., Tong,G.Q., Wang,C., Li Sun,L., Clarke,N.D. and
            Robson,P.
  TITLE     Resolution of cell fate decisions revealed by single-cell gene
            expression analysis from zygote to blastocyst
  JOURNAL   Dev Cell 18 (4), 675-685 (2010)
   PUBMED   20412781
REFERENCE   7  (bases 1 to 2407)
  AUTHORS   Yokoyama,S., Ito,Y., Ueno-Kudoh,H., Shimizu,H., Uchibe,K.,
            Albini,S., Mitsuoka,K., Miyaki,S., Kiso,M., Nagai,A., Hikata,T.,
            Osada,T., Fukuda,N., Yamashita,S., Harada,D., Mezzano,V., Kasai,M.,
            Puri,P.L., Hayashizaki,Y., Okado,H., Hashimoto,M. and Asahara,H.
  TITLE     A systems approach reveals that the myogenesis genome network is
            regulated by the transcriptional repressor RP58
  JOURNAL   Dev Cell 17 (6), 836-848 (2009)
   PUBMED   20059953
REFERENCE   8  (bases 1 to 2407)
  AUTHORS   Sansom,S.N., Griffiths,D.S., Faedo,A., Kleinjan,D.J., Ruan,Y.,
            Smith,J., van Heyningen,V., Rubenstein,J.L. and Livesey,F.J.
  TITLE     The level of the transcription factor Pax6 is essential for
            controlling the balance between neural stem cell self-renewal and
            neurogenesis
  JOURNAL   PLoS Genet 5 (6), e1000511 (2009)
   PUBMED   19521500
REFERENCE   9  (bases 1 to 2407)
  AUTHORS   Goytain,A., Hines,R.M. and Quamme,G.A.
  TITLE     Huntingtin-interacting proteins, HIP14 and HIP14L, mediate dual
            functions, palmitoyl acyltransferase and Mg2+ transport
  JOURNAL   J Biol Chem 283 (48), 33365-33374 (2008)
   PUBMED   18794299
  REMARK    GeneRIF: huntingtin interacting protein genes, HIP14 and HIP14L,
            encode Mg2+ transport proteins that are regulated by their innate
            palmitoyl acyltransferases thus fulfilling the characteristics of
            'chanzymes.'
REFERENCE   10 (bases 1 to 2407)
  AUTHORS   Kile,B.T., Hentges,K.E., Clark,A.T., Nakamura,H., Salinger,A.P.,
            Liu,B., Box,N., Stockton,D.W., Johnson,R.L., Behringer,R.R.,
            Bradley,A. and Justice,M.J.
  TITLE     Functional genetic analysis of mouse chromosome 11
  JOURNAL   Nature 425 (6953), 81-86 (2003)
   PUBMED   12955145
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AC124977.8.
            
            On Apr 30, 2007 this sequence version replaced NM_028031.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK010382.1, BC046599.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-135               AC124977.8         101758-101892       c
            136-281             AC124977.8         94849-94994         c
            282-404             AC124977.8         90944-91066         c
            405-482             AC124977.8         89511-89588         c
            483-627             AC124977.8         87835-87979         c
            628-692             AC124977.8         86481-86545         c
            693-855             AC124977.8         85543-85705         c
            856-981             AC124977.8         85201-85326         c
            982-1115            AC124977.8         81969-82102         c
            1116-1216           AC124977.8         79470-79570         c
            1217-1341           AC124977.8         75319-75443         c
            1342-1404           AC124977.8         74413-74475         c
            1405-1498           AC124977.8         73656-73749         c
            1499-1582           AC124977.8         72175-72258         c
            1583-1740           AC124977.8         68168-68325         c
            1741-1838           AC124977.8         66164-66261         c
            1839-2407           AC124977.8         63458-64026         c
FEATURES             Location/Qualifiers
     source          1..2407
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 31.11 cM"
     gene            1..2407
                     /gene="Zdhhc13"
                     /gene_synonym="2410004E01Rik; C530010M18; Hip14l; HIP3RP;
                     kojak; skc4"
                     /note="zinc finger, DHHC domain containing 13"
                     /db_xref="GeneID:243983"
                     /db_xref="MGI:MGI:1919227"
     exon            1..135
                     /gene="Zdhhc13"
                     /gene_synonym="2410004E01Rik; C530010M18; Hip14l; HIP3RP;
                     kojak; skc4"
                     /inference="alignment:Splign:2.1.0"
     CDS             109..1977
                     /gene="Zdhhc13"
                     /gene_synonym="2410004E01Rik; C530010M18; Hip14l; HIP3RP;
                     kojak; skc4"
                     /EC_number="2.3.1.225"
                     /note="HIP14-related protein; probable
                     palmitoyltransferase ZDHHC13; DHHC-13; zinc finger DHHC
                     domain-containing protein 13; huntingtin-interacting
                     protein 14-related protein"
                     /codon_start=1
                     /product="palmitoyltransferase ZDHHC13"
                     /protein_id="NP_082307.1"
                     /db_xref="CCDS:CCDS52259.1"
                     /db_xref="GeneID:243983"
                     /db_xref="MGI:MGI:1919227"
                     /translation="MEGPGLGSQCRNHSHGSHVPGFGRHGICVHENKELAKAKEILPL
                     IEDSSNCDIVKATQYGIFERCKELVEAGYDVRQPDRENVSLLHWAAINNRLELVKFYI
                     SKGAVIDQLGGDLNSTPLHWAIRQGHLPMVILLLQHGADPTLIDGEGFSSIHLAVLFQ
                     HMPIIAYLISKGQSVNMTDVNGQTPLMLSAYKVIGPEPTGFLLKFNPSLSVVDKTHQN
                     TPLHWAVAAGNVSAVDKLLEAGSSLDIRNAKGETPLDMALQSKNQLISHMLRTEAKMR
                     ANKQFRLWRWLHKCELFLLLILSMITLWAVGYILDFNSDSWLLKGCLLVALFFLTSLF
                     PRFLVGYKNLVYLPTVFLLSSIFWIFMTWFILFFPDTAGSPLYFAFIFSIMAFLYFFY
                     KTWATDPGFTKASEEERKVNIVTLAETGSLDFRTFCTSCLIRKPLRSLHCHVCNSCVA
                     RFDQHCFWTGRCIGFGNHHHYIFFLLSLSMVCDWIIYGSFVYWSNHCATTFKEDGLWT
                     YLNQIVACSPWVLYIFMLAAFHFSWSTFLLINQLFQIAFLGLTSHERISLLKQSRHMK
                     QTLSLRKTPYNLGFTQNLADFFQCGCFGLVKPCIIDWTSQYTMVFHPAKEKVLRSV"
     exon            136..281
                     /gene="Zdhhc13"
                     /gene_synonym="2410004E01Rik; C530010M18; Hip14l; HIP3RP;
                     kojak; skc4"
                     /inference="alignment:Splign:2.1.0"
     exon            282..404
                     /gene="Zdhhc13"
                     /gene_synonym="2410004E01Rik; C530010M18; Hip14l; HIP3RP;
                     kojak; skc4"
                     /inference="alignment:Splign:2.1.0"
     exon            405..482
                     /gene="Zdhhc13"
                     /gene_synonym="2410004E01Rik; C530010M18; Hip14l; HIP3RP;
                     kojak; skc4"
                     /inference="alignment:Splign:2.1.0"
     exon            483..627
                     /gene="Zdhhc13"
                     /gene_synonym="2410004E01Rik; C530010M18; Hip14l; HIP3RP;
                     kojak; skc4"
                     /inference="alignment:Splign:2.1.0"
     exon            628..692
                     /gene="Zdhhc13"
                     /gene_synonym="2410004E01Rik; C530010M18; Hip14l; HIP3RP;
                     kojak; skc4"
                     /inference="alignment:Splign:2.1.0"
     exon            693..855
                     /gene="Zdhhc13"
                     /gene_synonym="2410004E01Rik; C530010M18; Hip14l; HIP3RP;
                     kojak; skc4"
                     /inference="alignment:Splign:2.1.0"
     exon            856..981
                     /gene="Zdhhc13"
                     /gene_synonym="2410004E01Rik; C530010M18; Hip14l; HIP3RP;
                     kojak; skc4"
                     /inference="alignment:Splign:2.1.0"
     exon            982..1115
                     /gene="Zdhhc13"
                     /gene_synonym="2410004E01Rik; C530010M18; Hip14l; HIP3RP;
                     kojak; skc4"
                     /inference="alignment:Splign:2.1.0"
     exon            1116..1216
                     /gene="Zdhhc13"
                     /gene_synonym="2410004E01Rik; C530010M18; Hip14l; HIP3RP;
                     kojak; skc4"
                     /inference="alignment:Splign:2.1.0"
     exon            1217..1341
                     /gene="Zdhhc13"
                     /gene_synonym="2410004E01Rik; C530010M18; Hip14l; HIP3RP;
                     kojak; skc4"
                     /inference="alignment:Splign:2.1.0"
     exon            1342..1404
                     /gene="Zdhhc13"
                     /gene_synonym="2410004E01Rik; C530010M18; Hip14l; HIP3RP;
                     kojak; skc4"
                     /inference="alignment:Splign:2.1.0"
     exon            1405..1498
                     /gene="Zdhhc13"
                     /gene_synonym="2410004E01Rik; C530010M18; Hip14l; HIP3RP;
                     kojak; skc4"
                     /inference="alignment:Splign:2.1.0"
     exon            1499..1582
                     /gene="Zdhhc13"
                     /gene_synonym="2410004E01Rik; C530010M18; Hip14l; HIP3RP;
                     kojak; skc4"
                     /inference="alignment:Splign:2.1.0"
     exon            1583..1740
                     /gene="Zdhhc13"
                     /gene_synonym="2410004E01Rik; C530010M18; Hip14l; HIP3RP;
                     kojak; skc4"
                     /inference="alignment:Splign:2.1.0"
     exon            1741..1838
                     /gene="Zdhhc13"
                     /gene_synonym="2410004E01Rik; C530010M18; Hip14l; HIP3RP;
                     kojak; skc4"
                     /inference="alignment:Splign:2.1.0"
     exon            1839..2407
                     /gene="Zdhhc13"
                     /gene_synonym="2410004E01Rik; C530010M18; Hip14l; HIP3RP;
                     kojak; skc4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggagggcgga gcgcgagccg gaagtgggcg agaggcggct gaggcgtgct tggagagccg
       61 cggccgccac tttgcgctgg agccgcggcc gagcgggcgc gggtcgtgat ggagggcccg
      121 ggcctgggct cgcagtgcag gaatcacagc catggctccc acgttccagg atttgggcga
      181 cacggcatct gtgtacatga aaacaaagaa cttgcaaaag caaaagaaat tcttcctctt
      241 atagaggact cgagtaactg tgacattgtc aaagctacac aatatggaat ttttgaacga
      301 tgtaaagagc tggtagaagc aggatatgat gtcagacaac cagacagaga aaatgtgtct
      361 cttcttcact gggctgccat taacaacagg ctggaacttg taaagtttta tatttccaaa
      421 ggtgctgtga tagatcagtt gggtggtgac ctaaattcaa ctcctcttca ctgggccatc
      481 cgacaagggc atttgcctat ggtcatatta ttgctccagc acggtgcaga ccccactctg
      541 attgatggag agggattcag cagcatccat ctggcggtcc tgtttcagca catgcccatc
      601 atagcgtatc tcatctcaaa gggacagagt gtgaatatga cagatgtcaa tggacagacg
      661 ccgctcatgc tatcggctta caaagtaatt gggccagaac caactggatt tcttttaaag
      721 ttcaatccct ctctcagtgt tgttgataaa acacatcaga acactcctct tcactgggca
      781 gttgcagcag gaaatgtcag tgcagttgat aagcttttgg aagctggttc tagcctggac
      841 atccgaaatg ctaagggaga aacacctctt gatatggctc tacaaagtaa aaaccagctc
      901 attagtcaca tgctaagaac agaggccaag atgagagcca acaaacagtt tcggctttgg
      961 cgatggctgc acaaatgcga gctcttcctg ctgctgatac tctctatgat caccctgtgg
     1021 gctgttggat acatcctgga cttcaattca gattcttggc ttttaaaagg atgtcttcta
     1081 gtagcattgt tttttctgac atctttgttt ccaaggtttt tggttggcta taagaacctt
     1141 gtgtacttac cgacagtctt tctgctaagt tccatttttt ggatatttat gacttggttc
     1201 atcttattct ttcctgatac agcaggtagc cctttgtatt ttgcttttat tttcagcatc
     1261 atggcctttc tctatttttt ctacaagact tgggcaactg atccaggctt cactaaggct
     1321 tcggaggaag agaggaaagt gaatatcgtc accctagcag agactggctc tctggacttc
     1381 agaacatttt gcacatcatg tcttataagg aagcctttaa gatcactcca ttgccacgtg
     1441 tgcaactcct gtgtggctcg ctttgatcag cactgctttt ggactggacg ctgcataggt
     1501 tttggcaacc atcatcatta catcttcttc ttgctttccc tttccatggt atgtgactgg
     1561 atcatatatg gatctttcgt ctactggtca aatcattgtg ccacaacatt caaggaagat
     1621 ggactatgga cctacctcaa tcagatagtg gcctgttctc cctgggttct gtatatcttc
     1681 atgctagcag ctttccactt ctcatggtca acatttttat taataaatca actctttcag
     1741 attgcatttc tgggcctaac ctcccatgag agaatcagcc tcttaaagca aagcaggcac
     1801 atgaaacaga cattgtccct caggaaaaca ccatacaacc tcggattcac acagaacctg
     1861 gcagatttct ttcagtgtgg ctgctttggc ttagtgaagc cctgcatcat agattggaca
     1921 tcccagtaca ccatggtttt ccacccagcc aaagagaaag tccttcgctc tgtatgaaaa
     1981 aaaaagcacc tcaaaatgca ctctgacttg tttttgttta tgctggtgct cttattgctg
     2041 aaagtgaagt gagatattca gctaccacgg tcaaaggata agggatacag tcttcagcaa
     2101 gagtggacct tccgtcagac ccagaaagat ggcctgttac tgagcaattt ggcaagcagc
     2161 ttttaaaaac atatgaaaat attttcccca agaacatgag ttacttttga aaaaaaccta
     2221 atagtcactg attatggata aaataaagta ttttcaaata ctatattggc tttttaaaaa
     2281 tagtactctt taaacttgta atttttgata agttatttgt ctttgttgta tctataaata
     2341 tgtaaagaat atttaaatag atgtatctgt tttgctttca cacttaataa aaacattttt
     2401 ttatact
//
