LOCUS       NM_026025                888 bp    mRNA    linear   ROD 05-JUN-2024
DEFINITION  Mus musculus zinc finger CCHC-type and RNA binding motif 1 (Zcrb1),
            transcript variant 1, mRNA.
ACCESSION   NM_026025
VERSION     NM_026025.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 888)
  AUTHORS   Horiuchi,K., Perez-Cerezales,S., Papasaikas,P., Ramos-Ibeas,P.,
            Lopez-Cardona,A.P., Laguna-Barraza,R., Fonseca Balvis,N.,
            Pericuesta,E., Fernandez-Gonzalez,R., Planells,B., Viera,A.,
            Suja,J.A., Ross,P.J., Alen,F., Orio,L., Rodriguez de Fonseca,F.,
            Pintado,B., Valcarcel,J. and Gutierrez-Adan,A.
  TITLE     Impaired Spermatogenesis, Muscle, and Erythrocyte Function in U12
            Intron Splicing-Defective Zrsr1 Mutant Mice
  JOURNAL   Cell Rep 23 (1), 143-155 (2018)
   PUBMED   29617656
REFERENCE   2  (bases 1 to 888)
  AUTHORS   Wang,H., Gao,M.X., Li,L., Wang,B., Hori,N. and Sato,K.
  TITLE     Isolation, expression, and characterization of the human ZCRB1 gene
            mapped to 12q12
  JOURNAL   Genomics 89 (1), 59-69 (2007)
   PUBMED   16959469
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC126556.4, AK012852.1 and AI666574.1.
            
            On Mar 19, 2018 this sequence version replaced NM_026025.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AB095989.1, AK012852.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164134 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-44                AC126556.4         40827-40870         c
            45-870              AK012852.1         2-827
            871-888             AI666574.1         1-18                c
FEATURES             Location/Qualifiers
     source          1..888
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="15"
                     /map="15 47.53 cM"
     gene            1..888
                     /gene="Zcrb1"
                     /gene_synonym="2700088M22Rik; Madp-1"
                     /note="zinc finger CCHC-type and RNA binding motif 1"
                     /db_xref="GeneID:67197"
                     /db_xref="MGI:MGI:1914447"
     exon            1..172
                     /gene="Zcrb1"
                     /gene_synonym="2700088M22Rik; Madp-1"
                     /inference="alignment:Splign:2.1.0"
     exon            173..258
                     /gene="Zcrb1"
                     /gene_synonym="2700088M22Rik; Madp-1"
                     /inference="alignment:Splign:2.1.0"
     CDS             175..828
                     /gene="Zcrb1"
                     /gene_synonym="2700088M22Rik; Madp-1"
                     /note="isoform 1 is encoded by transcript variant 1; zinc
                     finger CCHC-type and RNA-binding motif-containing protein
                     1; U11/U12 snRNP 31 kDa protein; U11/U12 small nuclear
                     ribonucleoprotein 31 kDa protein"
                     /codon_start=1
                     /product="zinc finger CCHC-type and RNA-binding
                     motif-containing protein 1 isoform 1"
                     /protein_id="NP_080301.1"
                     /db_xref="CCDS:CCDS27766.1"
                     /db_xref="GeneID:67197"
                     /db_xref="MGI:MGI:1914447"
                     /translation="MSGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKD
                     KDTRKSKGVAFILFLDKDSALNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYF
                     DKSKCYECGESGHLSYACPKNMLGEREPPKKKEKKKKRKLPEPEEEIEEVEVSEEEGE
                     DPALDSLSQAIAFQQAKIEEEQSKWRPNPGGPSTSDDSRRPRIKKSAYFSDEEELSD"
     exon            259..287
                     /gene="Zcrb1"
                     /gene_synonym="2700088M22Rik; Madp-1"
                     /inference="alignment:Splign:2.1.0"
     exon            288..399
                     /gene="Zcrb1"
                     /gene_synonym="2700088M22Rik; Madp-1"
                     /inference="alignment:Splign:2.1.0"
     exon            400..507
                     /gene="Zcrb1"
                     /gene_synonym="2700088M22Rik; Madp-1"
                     /inference="alignment:Splign:2.1.0"
     exon            508..620
                     /gene="Zcrb1"
                     /gene_synonym="2700088M22Rik; Madp-1"
                     /inference="alignment:Splign:2.1.0"
     exon            621..696
                     /gene="Zcrb1"
                     /gene_synonym="2700088M22Rik; Madp-1"
                     /inference="alignment:Splign:2.1.0"
     exon            697..877
                     /gene="Zcrb1"
                     /gene_synonym="2700088M22Rik; Madp-1"
                     /inference="alignment:Splign:2.1.0"
     regulatory      852..857
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zcrb1"
                     /gene_synonym="2700088M22Rik; Madp-1"
                     /note="hexamer: AATAAA"
     polyA_site      873
                     /gene="Zcrb1"
                     /gene_synonym="2700088M22Rik; Madp-1"
                     /note="major polyA site"
ORIGIN      
        1 gtcgcccggc gcgccagcct ccggcccggg gccgtcgggg tttgggggag tcggaaggag
       61 cgctgcaccg cgctgcgttc gcggacgccc gcgcttttgc gcgccgcgga aggcagccgg
      121 aggtgaagcc gccgcgggct cgcatcctct ccgcttcgcc tctgcgccga agaaatgagc
      181 ggtggcttgg cgccaagtaa aagcacagtt tatgtatcca acttgccttt ctccctaaca
      241 aacaatgatt tataccggat attttccaag tatggcaaag ttgtaaaggt tactataatg
      301 aaagacaaag atactaggaa gagtaaaggt gttgcattta ttttgttttt ggataaagac
      361 tctgccttaa actgcaccag agcaataaat aataaacagt tatttggtag agtgataaag
      421 gcgagcatcg ctattgacaa tggaagagca gctgagttca tccggagacg aaactacttt
      481 gataaatcta agtgttatga atgtggggaa agtggacact taagttatgc ctgtcctaaa
      541 aacatgcttg gcgagcgtga gcctccaaag aagaaagaga agaagaagaa aaggaaactc
      601 cctgaaccgg aagaagaaat tgaggaagta gaagtgagtg aagaggaagg agaggacccg
      661 gctctggaca gtctgagtca ggccatagcg ttccagcagg ccaagattga agaagagcaa
      721 agcaaatgga gacccaaccc agggggtccc tcgacctcag atgattccag acgaccaagg
      781 ataaagaaaa gtgcatactt cagtgatgaa gaagaactta gtgattaaaa tatttatttt
      841 gtaaatattc aaataaaatc ttactgtacc aaatgcaaaa aaaaaaaa
//
