LOCUS       NM_145453               1544 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus zinc finger, CCHC domain containing 9 (Zcchc9), mRNA.
ACCESSION   NM_145453
VERSION     NM_145453.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1544)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1544)
  AUTHORS   Diez-Roux,G., Banfi,S., Sultan,M., Geffers,L., Anand,S., Rozado,D.,
            Magen,A., Canidio,E., Pagani,M., Peluso,I., Lin-Marq,N., Koch,M.,
            Bilio,M., Cantiello,I., Verde,R., De Masi,C., Bianchi,S.A.,
            Cicchini,J., Perroud,E., Mehmeti,S., Dagand,E., Schrinner,S.,
            Nurnberger,A., Schmidt,K., Metz,K., Zwingmann,C., Brieske,N.,
            Springer,C., Hernandez,A.M., Herzog,S., Grabbe,F., Sieverding,C.,
            Fischer,B., Schrader,K., Brockmeyer,M., Dettmer,S., Helbig,C.,
            Alunni,V., Battaini,M.A., Mura,C., Henrichsen,C.N.,
            Garcia-Lopez,R., Echevarria,D., Puelles,E., Garcia-Calero,E.,
            Kruse,S., Uhr,M., Kauck,C., Feng,G., Milyaev,N., Ong,C.K.,
            Kumar,L., Lam,M., Semple,C.A., Gyenesei,A., Mundlos,S., Radelof,U.,
            Lehrach,H., Sarmientos,P., Reymond,A., Davidson,D.R., Dolle,P.,
            Antonarakis,S.E., Yaspo,M.L., Martinez,S., Baldock,R.A., Eichele,G.
            and Ballabio,A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BB656071.1, BC024496.1 and BB291225.2.
            
            On Nov 9, 2006 this sequence version replaced NM_145453.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC024496.1, CA977637.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849380, SAMN00849386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-76                BB656071.1         10-85
            77-927              BC024496.1         1-851
            928-1165            BB291225.2         59-296
            1166-1544           BC024496.1         1084-1462
FEATURES             Location/Qualifiers
     source          1..1544
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="FVB/N"
                     /db_xref="taxon:10090"
                     /chromosome="13"
                     /map="13 47.43 cM"
     gene            1..1544
                     /gene="Zcchc9"
                     /gene_synonym="1810019C21Rik"
                     /note="zinc finger, CCHC domain containing 9"
                     /db_xref="GeneID:69085"
                     /db_xref="MGI:MGI:1916335"
     exon            1..87
                     /gene="Zcchc9"
                     /gene_synonym="1810019C21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            88..497
                     /gene="Zcchc9"
                     /gene_synonym="1810019C21Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             114..929
                     /gene="Zcchc9"
                     /gene_synonym="1810019C21Rik"
                     /codon_start=1
                     /product="zinc finger CCHC domain-containing protein 9"
                     /protein_id="NP_663428.2"
                     /db_xref="CCDS:CCDS36742.1"
                     /db_xref="GeneID:69085"
                     /db_xref="MGI:MGI:1916335"
                     /translation="MTRWARVTTSNSKRPLSATSWEDMKKGSVERADQSLPNRKQCQS
                     SRLPLRNDSPQAKRKKNKKKKEYLNEDVNGFMEYLKQNSQVLHNGQLIAADSQEVREE
                     IAVALKKDSRREGRRLKRQAAKKNAMVCFHCRQPGHGIADCPAVLESQDMGTGICYRC
                     GSTEHEMSKCRANVDPALGEFPFAKCFVCGEMGHLSRSCPDNTKGVYADGGSCKLCGS
                     VEHFKKDCRENQNSDRIITVGRWAKGMSADYEDVLDVPKLQKPKTKVPKVVNF"
     exon            498..648
                     /gene="Zcchc9"
                     /gene_synonym="1810019C21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            649..741
                     /gene="Zcchc9"
                     /gene_synonym="1810019C21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            742..810
                     /gene="Zcchc9"
                     /gene_synonym="1810019C21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            811..1532
                     /gene="Zcchc9"
                     /gene_synonym="1810019C21Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1512..1517
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zcchc9"
                     /gene_synonym="1810019C21Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1532
                     /gene="Zcchc9"
                     /gene_synonym="1810019C21Rik"
                     /note="major polyA site"
ORIGIN      
        1 gcacttccgg tctctatggc cgcgatctca tccggggccg ggcttctctg gttcgttgtc
       61 tcagctgctc tggaggattc agacccgatt agtggagtac ctctgatcca accatgacca
      121 ggtgggctag agttactact tcaaatagta agcgacccct gtcagcaaca tcatgggagg
      181 acatgaagaa ggggtctgtg gagagagcag accaaagcct tccaaatcgt aagcagtgtc
      241 aaagcagtag gctgcccctt agaaatgact cacctcaagc aaaacgcaaa aagaacaaaa
      301 agaaaaaaga gtacttgaat gaagacgtga acggcttcat ggagtacctg aagcagaact
      361 cacaggtact tcacaatgga cagctgatag cagctgacag ccaggaagtg agggaagaaa
      421 ttgccgtggc cttaaagaag gacagtcgac gggaaggaag gcggctaaag agacaggcgg
      481 caaagaagaa tgcaatggtg tgtttccatt gtcgacaacc tggccacgga attgctgact
      541 gtccagctgt actagagagt caggacatgg gcaccggcat ttgttaccgc tgtgggtcca
      601 cggagcacga gatgtccaag tgcagagcta acgtagaccc cgcgcttggt gaatttcctt
      661 ttgcaaaatg ttttgtctgc ggagaaatgg gacacctgtc cagatcctgc cctgataata
      721 ccaaaggagt ctatgctgat ggtggcagct gtaaactctg tggctccgtg gaacatttta
      781 agaaagattg ccgagaaaat cagaactcag atcggatcat cacggttggt cgctgggcaa
      841 agggtatgag tgcagactat gaagacgtgc tggatgtgcc caaactgcag aaacctaaaa
      901 ccaaagtacc caaagttgtt aatttttgat actaattggt acaattgtta attaccacct
      961 caaggttact ttccaaactc agcctttagc gattgaagct gggcaactgt ggaggcaaag
     1021 ctgtgttata gacaccactc tgaccttggt agcttgccta caatcaatct atcaaggcgt
     1081 acaggttgat taattacact ctctagaaat gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt
     1141 gtgtgtgtgt gtgtgtgtgt gtgtggtcta tctatctctc tgtgcctgtg tgtctgtctg
     1201 tatttgaagc agattctatg tagcccaggt tggcttcaca ctaataaccg tgctccagca
     1261 tccagagtac tgtgcctaag agcatatttt acagatggaa cttagaaatg actaaatgcc
     1321 tctatacctg attatagcag tcatcactat aaatgtaaat tatgaatcaa aattgacccc
     1381 taaacaaagc acatgccttt cagcttgtga atcaaaaaat attttgttat atgctcttaa
     1441 ttcagagtat caattttttg taatagaaat ttatttatat gttgtcacaa aatctgtaat
     1501 tcttagtact gaataaaatt atatcagctg ttaaaaaaaa aaaa
//
