LOCUS       NM_138590               2545 bp    mRNA    linear   ROD 03-JUN-2024
DEFINITION  Mus musculus zinc finger, CCHC domain containing 7 (Zcchc7), mRNA.
ACCESSION   NM_138590
VERSION     NM_138590.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2545)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2545)
  AUTHORS   Diez-Roux,G., Banfi,S., Sultan,M., Geffers,L., Anand,S., Rozado,D.,
            Magen,A., Canidio,E., Pagani,M., Peluso,I., Lin-Marq,N., Koch,M.,
            Bilio,M., Cantiello,I., Verde,R., De Masi,C., Bianchi,S.A.,
            Cicchini,J., Perroud,E., Mehmeti,S., Dagand,E., Schrinner,S.,
            Nurnberger,A., Schmidt,K., Metz,K., Zwingmann,C., Brieske,N.,
            Springer,C., Hernandez,A.M., Herzog,S., Grabbe,F., Sieverding,C.,
            Fischer,B., Schrader,K., Brockmeyer,M., Dettmer,S., Helbig,C.,
            Alunni,V., Battaini,M.A., Mura,C., Henrichsen,C.N.,
            Garcia-Lopez,R., Echevarria,D., Puelles,E., Garcia-Calero,E.,
            Kruse,S., Uhr,M., Kauck,C., Feng,G., Milyaev,N., Ong,C.K.,
            Kumar,L., Lam,M., Semple,C.A., Gyenesei,A., Mundlos,S., Radelof,U.,
            Lehrach,H., Sarmientos,P., Reymond,A., Davidson,D.R., Dolle,P.,
            Antonarakis,S.E., Yaspo,M.L., Martinez,S., Baldock,R.A., Eichele,G.
            and Ballabio,A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CJ150974.1, CJ155194.1, CF732773.1, AL805896.12 and AA277854.1.
            
            On Sep 24, 2010 this sequence version replaced NM_138590.3.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC050200.1, SRR11927938.2997734.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-35                CJ150974.1         2-36
            36-430              CJ155194.1         8-402
            431-1099            CF732773.1         22-690
            1100-1130           AL805896.12        137557-137587
            1131-1226           AL805896.12        155076-155171
            1227-1344           AL805896.12        158219-158336
            1345-2215           AL805896.12        160137-161007
            2216-2545           AA277854.1         9-338               c
FEATURES             Location/Qualifiers
     source          1..2545
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 23.57 cM"
     gene            1..2545
                     /gene="Zcchc7"
                     /gene_synonym="4930572I07Rik; D4Wsu132e"
                     /note="zinc finger, CCHC domain containing 7"
                     /db_xref="GeneID:319885"
                     /db_xref="MGI:MGI:2442912"
     exon            1..134
                     /gene="Zcchc7"
                     /gene_synonym="4930572I07Rik; D4Wsu132e"
                     /inference="alignment:Splign:2.1.0"
     exon            135..759
                     /gene="Zcchc7"
                     /gene_synonym="4930572I07Rik; D4Wsu132e"
                     /inference="alignment:Splign:2.1.0"
     CDS             159..1784
                     /gene="Zcchc7"
                     /gene_synonym="4930572I07Rik; D4Wsu132e"
                     /note="TRAMP-like complex RNA-binding factor ZCCHC7"
                     /codon_start=1
                     /product="zinc finger CCHC domain-containing protein 7"
                     /protein_id="NP_613056.2"
                     /db_xref="CCDS:CCDS18127.2"
                     /db_xref="GeneID:319885"
                     /db_xref="MGI:MGI:2442912"
                     /translation="MFGGYETIEAFEDDLYRDDSSSELSVDSEVEFQLYSQVHYAQSI
                     HNANKEEGYEEKNCENSETVSSQPNQKNLIVLSDSEVIQLSDTSEVITLSDEDSIYRC
                     KRKNIEVQAEEKTQSPATSHSNKVAQKCKRNNKKPKPEERPGVIREVMIIEVSSNEEE
                     ESTTSENENVESWMLLGSEEDGKDNDILLNLVGCETAGAEDDVNWFISDKDIEAKIDN
                     NRSSGRWNNRYYSVNKNVTCRNCDKRGHLSKNCPLPQKVRACCLCSERGHLQYGCPAR
                     YCLDCSLPMSSNHRCFERLSWRKRCDRCDMIGHHADACPEIWRQYHLTTKPGPPKKPK
                     TPSGQSALVYCYNCAQKGHYGHECTERRMFNQTFPTSPFIYCYDGKYDIQQRDRRIKR
                     KVKDLKKNGDFPRQFKRPHVEETDKRRHHDMRKSRSPRKYRRWPRENKETQKEKTRSR
                     EGKTHRRGHQPRGEDEDFPRGSKPNASGCANNQKPSKSLHHASHYHRLREERLLRESK
                     RSKPKKRKSTEDGSHDDLFLIKQKKKKPKPSGL"
     exon            760..797
                     /gene="Zcchc7"
                     /gene_synonym="4930572I07Rik; D4Wsu132e"
                     /inference="alignment:Splign:2.1.0"
     exon            798..923
                     /gene="Zcchc7"
                     /gene_synonym="4930572I07Rik; D4Wsu132e"
                     /inference="alignment:Splign:2.1.0"
     exon            924..1094
                     /gene="Zcchc7"
                     /gene_synonym="4930572I07Rik; D4Wsu132e"
                     /inference="alignment:Splign:2.1.0"
     exon            1095..1130
                     /gene="Zcchc7"
                     /gene_synonym="4930572I07Rik; D4Wsu132e"
                     /inference="alignment:Splign:2.1.0"
     exon            1131..1226
                     /gene="Zcchc7"
                     /gene_synonym="4930572I07Rik; D4Wsu132e"
                     /inference="alignment:Splign:2.1.0"
     exon            1227..1344
                     /gene="Zcchc7"
                     /gene_synonym="4930572I07Rik; D4Wsu132e"
                     /inference="alignment:Splign:2.1.0"
     exon            1345..2524
                     /gene="Zcchc7"
                     /gene_synonym="4930572I07Rik; D4Wsu132e"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2494..2499
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zcchc7"
                     /gene_synonym="4930572I07Rik; D4Wsu132e"
                     /note="hexamer: AATAAA"
     polyA_site      2520
                     /gene="Zcchc7"
                     /gene_synonym="4930572I07Rik; D4Wsu132e"
                     /note="major polyA site"
ORIGIN      
        1 gttttccccg gaagtacctt ctcctccctg gagtccgcgc ggacgcggct tccttacctc
       61 atttgtcctc gcccctcccc gttcctctac gcgtttcggt tcctggttgg tgcttcctgg
      121 tcgcggccgc ggcacattaa ggcaactgac tttccataat gtttggtggc tatgagacta
      181 tagaagcatt tgaagatgat ctttatcgtg atgattcatc tagtgaactg agtgttgata
      241 gtgaggtgga atttcagctc tacagccaag tccattatgc ccagagtata cataatgcca
      301 acaaggagga aggatatgag gaaaagaact gtgagaattc ggaaacagtg agtagtcaac
      361 caaatcagaa gaacttaatc gtcctttcag atagtgaggt catccagcta tctgatacat
      421 cagaggtcat cacattatct gatgaagata gtatttatag atgtaaaaga aaaaatattg
      481 aagtccaagc ggaagaaaag acccagagcc ctgctacttc tcattctaat aaagtggctc
      541 agaaatgcaa gaggaataat aagaagccta aacctgaaga gaggccaggt gtgatccgag
      601 aggtcatgat catagaggtc agttcaaatg aggaggaaga aagtaccact tcagagaacg
      661 aaaatgtgga aagctggatg ctcctggggt ctgaggaaga tggtaaagac aatgacatcc
      721 ttctcaactt ggtggggtgt gagaccgctg gtgctgaaga tgatgtaaat tggttcatca
      781 gtgacaaaga catcgaggcc aagatagata ataacagatc atctggaagg tggaacaacc
      841 gatactattc agtcaacaaa aatgtcacct gtagaaattg tgataaacgt ggccatttgt
      901 caaaaaactg ccccttacca caaaaagtcc gggcctgctg cctctgctca gagagaggac
      961 atctccagta tggctgtcca gcccgttact gcttagactg ctctttgccc atgtcttcca
     1021 accacagatg ttttgaaaga ttgtcctgga gaaaacgatg tgaccgatgt gatatgatag
     1081 gccaccatgc tgacgcttgc ccagaaatct ggaggcagta tcacctaacg accaaacctg
     1141 gaccaccaaa aaagccaaag accccttctg gacaatcagc gttagtgtat tgctacaact
     1201 gtgcacagaa aggccattat ggacatgaat gtacagagag acgaatgttt aaccagacgt
     1261 ttccaacatc tccattcata tattgctatg atggcaaata tgacatccag caaagggatc
     1321 ggagaataaa gcgaaaagtc aaagatctca agaaaaatgg agactttcca aggcagttca
     1381 aaagaccaca tgtagaagag acagataaga ggcgccacca cgatatgaga aaaagccgtt
     1441 ccccaagaaa atacaggagg tggcctcgag aaaataaaga aacacagaaa gaaaagacca
     1501 ggagtagaga aggcaagacg cacaggaggg gtcaccagcc tcggggtgag gatgaagact
     1561 tccccagggg ctcaaaaccc aacgcctctg gctgcgctaa caaccagaag ccttctaagt
     1621 ccctccacca tgcatcccat taccacaggc tgagagaaga gcggcttctc agggagagca
     1681 agcggagcaa gccaaagaaa aggaagagta cagaggacgg cagccatgat gatttgtttc
     1741 ttattaagca aaagaagaag aagcctaagc cgagtggtct ctgacctggt ctccgcgctt
     1801 cagtgtcctg gaagtgctta agtacctgtt aatgagacgc tgggattgaa tgctgagttc
     1861 cggccatgcc tggagtggct gtacagagac cacaaagagt tcaggtctgt gtccacaggc
     1921 tgttcctagg taggaaggca aacttgaggt agaaaattgt cttttcatga aaaccttttt
     1981 aaatgctttg gaaaaattac aagctcatca gatgatttta tctccaatgt ttgaggactt
     2041 aaaagctcat tggaagaaag tttattgtta agaaaagtca tcactttttt agcttttttt
     2101 ttaagaacac tggaaaaatc aatgaaaatc caagcccggc tttgcttgca tcagaggctg
     2161 ttggaatctc tctctgtaca gaacagcatg taaaatgaag ctgtcaccat tgaattctgg
     2221 aggaggtgga ggagaggaca tagcaaatac acaaacaaaa tgtgcgcagt gtgggcttgc
     2281 aggacggagg tgtgaaaggc atcctcaaac ttgagtgcaa tggcagggac attttgttcg
     2341 cactgttaac agccatagtt caagagacag ggatacatac catcaaccta acttgtcctc
     2401 gtggatcctt ttaaacactt caacgctctt tagaatcttt tgtacttgtg agcctttttt
     2461 acccttgtga aagcctaatg ttagaataag aaaaataaaa tgcctgaaac catgtgtaaa
     2521 taaaaaaaaa aaaaaaaaaa aaaaa
//
