LOCUS       NM_001308144            2501 bp    mRNA    linear   ROD 15-DEC-2024
DEFINITION  Mus musculus zinc finger, CCHC domain containing 4 (Zcchc4),
            transcript variant 2, mRNA.
ACCESSION   NM_001308144 XM_006504188
VERSION     NM_001308144.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2501)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2501)
  AUTHORS   Bonaldo,M.F., Lennon,G. and Soares,M.B.
  TITLE     Normalization and subtraction: two approaches to facilitate gene
            discovery
  JOURNAL   Genome Res 6 (9), 791-806 (1996)
   PUBMED   8889548
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK138997.1, AK019621.1 and CD773830.1.
            
            On Apr 28, 2015 this sequence version replaced XM_006504188.2.
            
            Transcript Variant: This variant (2) uses an alternate splice site
            in the 3' coding region and contains an alternate 3' terminal exon,
            compared to variant 1. This results in a novel 3' coding region and
            3' UTR, compared to variant 1. The encoded isoform (2) is shorter
            and has a distinct C-terminus, compared to isoform 1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK019621.1, ERR3363658.3851162.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849380, SAMN00849381
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-19                AK138997.1         2-20
            20-2108             AK019621.1         2-2090
            2109-2483           AK019621.1         2092-2466
            2484-2501           CD773830.1         1-18                c
FEATURES             Location/Qualifiers
     source          1..2501
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 28.7 cM"
     gene            1..2501
                     /gene="Zcchc4"
                     /gene_synonym="4930449I23Rik"
                     /note="zinc finger, CCHC domain containing 4"
                     /db_xref="GeneID:78796"
                     /db_xref="MGI:MGI:1926046"
     exon            1..160
                     /gene="Zcchc4"
                     /gene_synonym="4930449I23Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            161..279
                     /gene="Zcchc4"
                     /gene_synonym="4930449I23Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            280..362
                     /gene="Zcchc4"
                     /gene_synonym="4930449I23Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            363..638
                     /gene="Zcchc4"
                     /gene_synonym="4930449I23Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            639..716
                     /gene="Zcchc4"
                     /gene_synonym="4930449I23Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            717..789
                     /gene="Zcchc4"
                     /gene_synonym="4930449I23Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            790..940
                     /gene="Zcchc4"
                     /gene_synonym="4930449I23Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            941..1041
                     /gene="Zcchc4"
                     /gene_synonym="4930449I23Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1042..1163
                     /gene="Zcchc4"
                     /gene_synonym="4930449I23Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1164..1239
                     /gene="Zcchc4"
                     /gene_synonym="4930449I23Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1240..1291
                     /gene="Zcchc4"
                     /gene_synonym="4930449I23Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1292..1436
                     /gene="Zcchc4"
                     /gene_synonym="4930449I23Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1437..2484
                     /gene="Zcchc4"
                     /gene_synonym="4930449I23Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2463..2468
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zcchc4"
                     /gene_synonym="4930449I23Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      2484
                     /gene="Zcchc4"
                     /gene_synonym="4930449I23Rik"
                     /note="major polyA site"
ORIGIN      
        1 ggttgggaca gaggctttcg ggacttcggc agaaagatgg cggcgcccat ggactgtctt
       61 gagtccctgg agggtgatgg cgacgcgggg cgtagggcgt ccggggtaga ggtggcgctt
      121 ccctcgaacc ccacggctcc tgccccgctg tgcccgcacg ggcctactct tctctttgta
      181 aaagtgaacc aagggaagga agaaacacga aagttttatg cctgctcagc ctgtagagat
      241 agaaaagact gtaacttttt tcagtgggaa gatgaaaagt tgtcagaagc tagacttgct
      301 gcccgagaaa ttcataatca aaaatgccag cctcctctat cccgggcaca atgcatagaa
      361 aggtacctga gtttcattca gttgcccttg gctcaaagaa agttctgtca aagttgccag
      421 cagttgctgt tacctgcaga ctggagggag cacggcacgc atcagctgtc agctgacatt
      481 tctgtcgccc agcttggaag gcccagtcag ctgctctacc cactggagaa caagaagacg
      541 cacgcccagt acctgtttgc tgacaggagc tgccagtttc tggcaggcct ccttgctacc
      601 ctcggattca gcagagtgtt gtgtgttgga gcaccaaggc tccacgagca gatcaggcta
      661 acagcatcag gtgagaggtc cggcatgagg agccttttat tggacattga ctttcgatat
      721 tcacagtttt acctggaagg aagcttttgc cgctataaca tgttcaacca tcatttcttt
      781 gatggaaagg ctgcccttga agtgtgcaag gaattcttac aggaagagga aggcaagggg
      841 gtgattatgg tgacagaccc tccctttggc ggcttggtgg aacctctggc tattacattc
      901 aagaagttaa ttgctatgtg gaaagaaggt caaagccaag atgacagcca caaagaactg
      961 cccattttct ggattttccc ctattttttt gaatcacgga tttgtcagtt tttcccgagc
     1021 ttctgcatgc tggattacca ggtggattat gataatcatg cgctttacaa acatggaaag
     1081 acaggtcgaa aacagtctcc tgtccgaatt ttcaccaacg ttccacccaa caaaataatc
     1141 cttccatcag aggaaggata cagattttgc tccctctgtc agagatatgt ctctcgtgag
     1201 aaccagcact gtgtgcattg taattcttgc acatccaagg acggcaggaa atggagccat
     1261 tgctttctct gcaaaaagtg tgtgaagcct tcctggatcc attgtaacac ctgcaatcgc
     1321 tgtgcactcc cagaccattc ctgtttgggg cctaaagatg gctgctttat ttgtggtgcg
     1381 ctggatcaca aacgcagcaa ttgtcccaac atcggcacct cttggagagc taacaaagct
     1441 gtcagaaagc agaagcaaag aaaacgtaat aagataagaa gggaggcact aaaggacaat
     1501 ccatgaatca cacatctgct ccaagaagaa ggaagaggag ggaaggggcc atcaatatcc
     1561 tcactcctaa atgtccagtg acttgagaat aagcaagatt tatagtccaa cctttgatgc
     1621 cattttctcc gcgtgccaca tggacttaaa tccagctgct ttcaaaggtg tgccccttcc
     1681 taagcctggt aatgggcagg tggcatttgc tggctatgtc ccttcagctg cctctgcaga
     1741 ccggggagcc ttctgtaggc agcaggttgc ctggctctct ctccacgctt ttccaccctt
     1801 taacgcctca ccagtgttta ttttggcctc ttttgactga gaaactgacg gatgttcagt
     1861 acctgtttac ttcgataccg gatagaaatg caaatgaaag tctaccgctt acctgcttac
     1921 ctcgtgtgcg ttgagctttt gtttcacttt aggtatgaaa ctcttgttaa atgaccaagt
     1981 catacattaa agcacatctg gtccatagcc catcggccac atgtgcccca ggatagctat
     2041 gaatgtggcc aatcataagc acacttaata cattgtgagg ctttttgtga gattttggtc
     2101 atgacttgtt ctcacagacc ttgagtagga acattgtaga tgatgtcgtg ttgcagtgtc
     2161 aaaagttggg cacagccggc cagtggtggc gcacgccttt aatcccagca cttgggtgga
     2221 agaggcaggt cgatttctga gtttgaggtc agcctggtct acagagtgag ttccaggaca
     2281 gccaggacta cacagagaaa ccctgtctcg taaaaacaaa aacaaaacaa aaaaaagttg
     2341 gacgcactaa gactctttta acaaaaagta tcatacataa tatttatgga ttggatctag
     2401 agatggtggg ggaaattgtt attgaaacgc tgtaaagata aaaggattgt aattgtttta
     2461 ttattaaatc tttatttttc agtaaaaaaa aaaaaaaaaa a
//
