LOCUS       NM_001122676            5819 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus zinc finger, CCHC domain containing 2 (Zcchc2),
            transcript variant A, mRNA.
ACCESSION   NM_001122676
VERSION     NM_001122676.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 5819)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 5819)
  AUTHORS   Nishimura,M., Yokoi,N., Miki,T., Horikawa,Y., Yoshioka,H.,
            Takeda,J., Ohara,O. and Seino,S.
  TITLE     Construction of a multi-functional cDNA library specific for mouse
            pancreatic islets and its application to microarray
  JOURNAL   DNA Res 11 (5), 315-323 (2004)
   PUBMED   15747579
REFERENCE   3  (bases 1 to 5819)
  AUTHORS   Okazaki,N., F-Kikuno,R., Ohara,R., Inamoto,S., Koseki,H.,
            Hiraoka,S., Saga,Y., Seino,S., Nishimura,M., Kaisho,T., Hoshino,K.,
            Kitamura,H., Nagase,T., Ohara,O. and Koga,H.
  TITLE     Prediction of the coding sequences of mouse homologues of KIAA
            gene: IV. The complete nucleotide sequences of 500 mouse
            KIAA-homologous cDNAs identified by screening of terminal sequences
            of cDNA clones randomly sampled from size-fractionated libraries
  JOURNAL   DNA Res 11 (3), 205-218 (2004)
   PUBMED   15368895
REFERENCE   4  (bases 1 to 5819)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK046562.1, AK173248.1, BC055760.1 and BP762779.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN00849375,
                              SAMN00849380 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-283               AK046562.1         2-284
            284-2981            AK173248.1         1-2698
            2982-4319           BC055760.1         1-1338
            4320-5789           AK173248.1         4900-6369
            5790-5819           BP762779.1         27-56               c
FEATURES             Location/Qualifiers
     source          1..5819
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="1"
                     /map="1 49.76 cM"
     gene            1..5819
                     /gene="Zcchc2"
                     /gene_synonym="9930114B20Rik"
                     /note="zinc finger, CCHC domain containing 2"
                     /db_xref="GeneID:227449"
                     /db_xref="MGI:MGI:2444114"
     exon            1..1302
                     /gene="Zcchc2"
                     /gene_synonym="9930114B20Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             385..3885
                     /gene="Zcchc2"
                     /gene_synonym="9930114B20Rik"
                     /note="isoform A is encoded by transcript variant A; zinc
                     finger CCHC domain-containing protein 2"
                     /codon_start=1
                     /product="zinc finger CCHC domain-containing protein 2
                     isoform A"
                     /protein_id="NP_001116148.1"
                     /db_xref="CCDS:CCDS48335.1"
                     /db_xref="GeneID:227449"
                     /db_xref="MGI:MGI:2444114"
                     /translation="MLRMKLPPKSTHPSEPPPDAEEPEADARPGAKAPLRRRRDCRPP
                     PPPTGLPRGPPPPPSPPRGLEPPVASGPTAGAGMPGGGGHAAALREQERVYEWFGLVL
                     GSAQRLEFMCGLLDLCNPLELRFLGSCLEDLARKDYHYLRDSEAKANGLSDPGSLADF
                     REPAVRSRLIVYLALLGSENREAAGRLHRLLPQVDAVLRSLRATRAEGSRGSVEDEPS
                     GDGEQDAEKDGPGPEGSGCAKLGTGGGLGFRAQEELLLLFTMASLHPAFSFHQRVTLR
                     EHLERLRSALRVEPEDAEVEPSNFAGSRAQNDSACGDYIQSNETGLVEQAQIPPDGLT
                     VAPHRAQREAVHIEKIMLKGVQRKRADKYWEYTFKVNWSDLSVTTVTKTHQELQEFLL
                     KLPKEFSSESFDKTILKALNQGSLRREERRHPDLEPILRQLFSTSPQAFLQSHKVRSF
                     FRSISSESQHNFNNLQSSLKTSKILEHLKEDSSEASSQEEDVLQHTIIHKKHAGKSPA
                     LNVATSCSPLDGLTMQYAEQNGIVDWRNQGCAAIQHSEHCVSSADQHSAEKRSLSSGN
                     KKKGKPQVEKEKVKKTEDRLNSRINGIRLSAPQHVHGSTVKDMNLDIGSGHDTCGETS
                     SESYSSPSSPRHDGRESLESEEEKDRDSDSNSEDSVNPSSARFSGYGSVAQTIAVKPP
                     AETVSLGTEDGNLLEAALTSHKYPHIPFMPTLHCVTHNGAQKSQVVIPSPKSADGKTL
                     GMLVPNAVAISAVMESSNSAPVGILGPAASGESEKHLELLASPLPLPSTFLPHSSAPA
                     LQLTLQSLKLQPPQGSSDSCPVSIPPQPTGSLSIGSPNTAFIPVHNPGSFPGSPVATT
                     DPITKSAPQVVGLNQMVPQIEGNTGTVPQPSNVKVVLPAAGLSAAQPPASFPFPGSPQ
                     AASALPTQNSSALNAATSAQPASTGISPSQSTVPPAVPTHTPGPAPSPSPALTHSTAQ
                     SDSTSYISAVGNTNANGTIVPPQQMGPCGSCGRRCSCGTNGNLQLNSYYYPNPMPGPM
                     YRLPSFFTLPSICNGSYLNQAHQSNGNQLPFFLPQTPYANGLVHDPVMGSQASYGMQQ
                     MAGFGRLYPVYPAPNVVANTSGSGPKKNGNVSCYNCGVSGHYAQDCKQSSMEANQQGT
                     YRLRYAPPLPPSNDTLDSAD"
     exon            1303..1414
                     /gene="Zcchc2"
                     /gene_synonym="9930114B20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1415..1491
                     /gene="Zcchc2"
                     /gene_synonym="9930114B20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1492..1563
                     /gene="Zcchc2"
                     /gene_synonym="9930114B20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1564..1676
                     /gene="Zcchc2"
                     /gene_synonym="9930114B20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1677..1771
                     /gene="Zcchc2"
                     /gene_synonym="9930114B20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1772..1855
                     /gene="Zcchc2"
                     /gene_synonym="9930114B20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1856..1913
                     /gene="Zcchc2"
                     /gene_synonym="9930114B20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1914..2046
                     /gene="Zcchc2"
                     /gene_synonym="9930114B20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2047..2111
                     /gene="Zcchc2"
                     /gene_synonym="9930114B20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2112..2206
                     /gene="Zcchc2"
                     /gene_synonym="9930114B20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2207..2335
                     /gene="Zcchc2"
                     /gene_synonym="9930114B20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2336..3817
                     /gene="Zcchc2"
                     /gene_synonym="9930114B20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3818..5799
                     /gene="Zcchc2"
                     /gene_synonym="9930114B20Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      5772..5777
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zcchc2"
                     /gene_synonym="9930114B20Rik"
                     /note="hexamer: AATAAA"
     regulatory      5780..5785
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zcchc2"
                     /gene_synonym="9930114B20Rik"
                     /note="hexamer: AATGAA"
     polyA_site      5790
                     /gene="Zcchc2"
                     /gene_synonym="9930114B20Rik"
                     /note="major polyA site"
     polyA_site      5796
                     /gene="Zcchc2"
                     /gene_synonym="9930114B20Rik"
                     /note="major polyA site"
ORIGIN      
        1 agccccgctg ctcctcctcc tcctcgccaa gccgctctgc cagcgccggc tcgagaggga
       61 acggctcagg ccgtcaccgc cagccccgtg cggacgcgga aaggcggaag gaggacgcgc
      121 tcgtcgactt gctcctcccg caccggactc cccagcgggc acagagccca ggggaggagc
      181 cgtcgcggtc acgccccgcc tcccgccggg acgaagctgc cggccggcca ccgccccccg
      241 tccccggtcg gcgagacccg cccccggccc gccccggcgg catggagggg caacgttctt
      301 gacggccgtg ccgccgcccg ggcgctcggc tcctcccgcc gcccccgctc cctcgctcgc
      361 atgtccgcac cgccttagct gaggatgctg aggatgaagc tgccaccgaa gtcgacgcac
      421 cccagcgagc cgccgcccga cgcggaggag cccgaggcgg acgcgcggcc gggcgcaaag
      481 gctccgctgc gccgccgccg cgactgccgc ccgccgccgc cgcccacggg cctgccgcgg
      541 ggacccccgc cgccgccgtc gccgccccgg gggctcgagc cgcctgttgc tagcgggccg
      601 acggcgggcg cgggcatgcc gggcggcggc gggcacgcgg cggcgctgcg cgaacaggag
      661 cgggtgtatg agtggttcgg gctggtgctg ggctcggcgc agcgccttga gttcatgtgc
      721 gggctgctgg acctgtgcaa cccgctggag ctgcgctttc tcggctcgtg cctggaggac
      781 ttggcgcgca aggactacca ctacctgcgc gactcggagg cgaaggccaa cggcctctcg
      841 gacccagggt cgctggccga tttccgagag cccgccgtgc gctcgcgcct catcgtatac
      901 ctagcgctgc tgggctcgga gaacagagag gccgctggcc gcctgcaccg cctcctgccc
      961 caggtggacg cggtgctcag aagcctgcgc gcgactcgag ccgagggctc gcggggcagc
     1021 gtggaggacg agccgagtgg cgatggcgag caggacgcgg agaaggacgg ccccggcccg
     1081 gaaggcagtg gctgcgccaa gctcgggact ggaggcgggc tcggcttcag ggcccaagag
     1141 gaactgctgc tgctgttcac catggcttcg ctgcacccgg ctttctcctt ccaccagcgg
     1201 gtcaccctga gggagcacct ggagaggctc cgcagcgcac tccgggtgga gccggaggac
     1261 gcggaggtgg agcccagcaa ctttgcgggc tccagggccc agaacgactc tgcctgtggt
     1321 gactatatac agagtaatga gactggttta gtagagcaag cccagatacc tccagacgga
     1381 ctcactgtgg cccctcatcg agctcagcga gaagctgtcc acattgagaa gataatgttg
     1441 aaaggagtcc agagaaaaag ggctgacaag tactgggagt acactttcaa agtaaattgg
     1501 tctgaccttt cagtcacaac agtaacaaaa acccaccaag aactacagga atttctactg
     1561 aagcttccaa aggaattctc ttctgagagt tttgacaaga ccatcttaaa agccctgaat
     1621 cagggttctc taaggaggga agagcggcgc caccctgacc tggagcccat cctaaggcag
     1681 ctgttttcaa cctcacccca ggctttcctt cagagtcaca aagtccgcag cttttttcgg
     1741 tcgatctcat cggagtctca acacaatttc aataacttac agtcctctct gaagacttct
     1801 aagatattag aacacttaaa agaagacagc tcagaagctt caagtcaaga agaagatgtg
     1861 ttacagcaca ccatcatcca caagaaacat gctgggaaaa gtcccgctct gaatgttgct
     1921 acaagctgtt ctccattgga tggccttacc atgcagtatg cagaacaaaa tggaattgtg
     1981 gattggagga accaaggctg tgcggccatc caacactcag aacactgtgt gtcctcagct
     2041 gaccaacact ctgctgaaaa acggagctta tcttcaggaa ataagaagaa agggaagcca
     2101 caagtagaaa aggagaaagt aaagaaaact gaggacagat tgaacagcag aataaatgga
     2161 attagactct ctgctccaca gcatgttcat ggcagtactg tgaaagatat gaatttggac
     2221 attggatctg gacatgacac atgtggagaa acatcttcag agagttacag ctctccgtct
     2281 agtccacggc atgatggaag agagagtttg gaaagtgaag aagagaagga cagagattca
     2341 gacagcaatt ctgaagattc tgtgaatccg tcgtcagcca ggttttcagg ttatggctct
     2401 gtcgcccaga ccatcgcagt caagccgcct gctgagactg tctccctggg aaccgaggac
     2461 gggaatcttt tggaagctgc actgacctca cacaagtacc cgcatattcc cttcatgcca
     2521 actctacact gtgtcacgca caacggtgcc cagaagtcgc aagttgtcat tccgtcgccc
     2581 aaatctgcag atggcaaaac cttagggatg cttgtcccta atgcggtggc tatttctgca
     2641 gtgatggaat cctcaaattc agcccctgtt ggaatcctag gcccggcagc ttctggggag
     2701 tcagagaaac accttgagtt gttagcttcc cctttacctc tcccatcaac cttcctccca
     2761 cacagcagtg cgcctgcttt gcagctgaca ttacagagtc taaagttaca gccaccacag
     2821 ggatcttctg acagttgtcc agttagtatc ccaccacaac caaccggaag tctgagcatc
     2881 ggatcaccaa acactgcctt tattcctgtc cataacccag gtagtttccc agggtctcct
     2941 gtggctacca cggatcccat cacaaaatcc gcaccccaag tggtaggact aaatcaaatg
     3001 gtgcctcaga ttgaggggaa cacagggaca gtccctcagc cgagcaatgt gaaggtagtt
     3061 cttccggcag cgggcctctc agctgcacag ccaccagctt ccttcccctt tccaggctca
     3121 ccccaggctg ccagtgcact ccccacccag aattccagtg cgctcaacgc agccacttct
     3181 gcccagccag caagcacagg catcagtcca tcccagtcca cagttccccc tgctgttccc
     3241 acccacaccc caggccctgc cccgagcccc agccctgcct tgacacacag tactgcacag
     3301 agcgacagca cgtcgtacat cagtgctgtg gggaacacga atgctaacgg gaccatagtg
     3361 ccaccacagc agatgggtcc ctgtggttct tgtgggcgaa ggtgcagctg cgggaccaat
     3421 ggaaacctcc agctaaatag ttactattat cccaacccaa tgcctggacc aatgtaccga
     3481 ctcccatcat tcttcactct gccatccatt tgcaatggca gctacctcaa ccaagcacat
     3541 cagagcaatg gaaaccaact tccttttttt ctgcctcaga ctccatatgc aaatggactg
     3601 gtgcatgacc cagtcatggg gagccaagcc agctatggca tgcagcagat ggcaggattt
     3661 gggagattgt atcctgtata tccagcacct aatgtagttg ccaacaccag tggttctggg
     3721 cccaagaaga atgggaatgt ctcatgttac aattgtggtg taagcggaca ctatgcacaa
     3781 gactgtaagc agtcatccat ggaggccaat cagcaaggca cttacagact gagatacgca
     3841 cctcccctcc ccccttctaa tgatacgttg gattctgcag actgaacgag taaagcttgc
     3901 ctacttaatg cactcaagtg tggggagtca tggggtgtgg aggggaggaa aggaaaggta
     3961 ttttgtttct ttgtctgtcc atttcctcac tttctatgca gttgggagtt ttcatttctc
     4021 ttttacctgt gtccagaata tgaaagaatg tgatgctcct gagcctctgg tctcctggtc
     4081 cagcagccgg cttacatgta tgacacttgt aacttcaatt tcagacaaac tcttgaacgg
     4141 aaaacattga tgtgtgcttt tttacactga ctacttgctg tgtgcaatgt ttactgaatc
     4201 tttaaactgt gtatctgacc ttagttgttt ccacaacact ggttaacagt cttatggttt
     4261 tcttcttcct ggctttcctc actttgaccc tgaacccaac ttctcttcca gctaccctct
     4321 ctccctggcc tgcggcaagg gtgctcagca gtgtccttgt cacacttcag taacctgtct
     4381 gaaccaaggc aacatgtttc actgtaaatt ttagacgtca gatttccaag aagtatgtat
     4441 atatgtcata agagcatcac gtaaatgcat atatgcagca cctgtccaaa taacatgaga
     4501 acaagtggga gagaggaaat cagactcggg aagccccaaa tggggagtgg acaaacaggc
     4561 tgttcttgag cgaaaacagc agttccttcc atcacacttc tgagagactc aaaggggaca
     4621 cactggtgtg aatgttcttc tctgtgtgct tgtatctgtg atgacagtca acatccaggg
     4681 cttcctgtcg tctgccacct tgacctaccc agacactgct gagtgaagat gtcctcttcc
     4741 ctacctggct gttgcagtgt cacactgtta caatgtgtgt ggtttattgc atcagaacag
     4801 aagctagtgg gttttctcaa aagtcaggta cctgcttcct aagccgagtc tcctcagcca
     4861 agtcactttt ataacccttt accactatgc ttgatacaat gtgaaagact gcgtggagtg
     4921 tgttgagatg gtgtttgtta atcatgtcag tgtcgtgtca ctaagtttaa tgctgctggc
     4981 tttttaaagt tttgttttgt tttaagccaa tctatatact aaatcgcttc caggtaattt
     5041 tttgatttcc tgaagtgcac tgaggttatc tgggaggttg gatgtatctt cagtgactgc
     5101 tgcattcaac agcaaggaac aagtaccacc atccattgta agctctcggg gtagcagggc
     5161 ttcccattcc ttggtacaga gtagaagtga ttgacttttg ttgtggggag tagagttggt
     5221 gtgcagcaga ggcactggaa tgttgggtct gggttctgaa acctgacatt gtgagacaaa
     5281 gaaaaaactt gaagcaagaa gaagctagtt gaacacttca acggtagtgt ttgtatttat
     5341 cgcgccagtg tacgttctga acctttcagg ggtaggagct actgggagag acgggggagt
     5401 gagatggggt agacgaaagc tttaatttag gaagaaaaag ttcaagtaaa ggaaattatt
     5461 ttgatgaaat atattttatt tgatctgggt atttttggac cacattatta aattgttgag
     5521 ctgcagctga gttgctgagg ggagagcttt gctaagcctt gcacaggtgc gtgtgactca
     5581 tcgccaggtg tactttatgg agcttatttt atgatttcaa atactgtact gtacatagga
     5641 ggtatgttac cttctcctta tttgtatgtt taccatatac tttgatattt gaaatgttat
     5701 gtactggaaa ggccacttat atttctagaa cagattggat tttatgcaat ctttttcctt
     5761 gaattaacag caataaaaaa atgaaaaaca gcctaagaaa aaaaaaaaaa aaaaaaaaa
//
