LOCUS       NM_026479               1257 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus zinc finger, CCHC domain containing 10 (Zcchc10),
            mRNA.
ACCESSION   NM_026479
VERSION     NM_026479.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1257)
  AUTHORS   Tang,F., Barbacioru,C., Nordman,E., Bao,S., Lee,C., Wang,X.,
            Tuch,B.B., Heard,E., Lao,K. and Surani,M.A.
  TITLE     Deterministic and stochastic allele specific gene expression in
            single mouse blastomeres
  JOURNAL   PLoS One 6 (6), e21208 (2011)
   PUBMED   21731673
REFERENCE   2  (bases 1 to 1257)
  AUTHORS   McKee,A.E., Minet,E., Stern,C., Riahi,S., Stiles,C.D. and
            Silver,P.A.
  TITLE     A genome-wide in situ hybridization map of RNA-binding proteins
            reveals anatomically restricted expression in the developing mouse
            brain
  JOURNAL   BMC Dev Biol 5, 14 (2005)
   PUBMED   16033648
  REMARK    Publication Status: Online-Only
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AL592489.13.
            
            On Apr 29, 2007 this sequence version replaced NM_026479.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK020177.1, BC087902.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN00849380
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-53                AL592489.13        33943-33995
            54-212              AL592489.13        36523-36681
            213-257             AL592489.13        39941-39985
            258-1257            AL592489.13        41556-42555
FEATURES             Location/Qualifiers
     source          1..1257
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 31.92 cM"
     gene            1..1257
                     /gene="Zcchc10"
                     /gene_synonym="2410141K03Rik; D11Ertd416e"
                     /note="zinc finger, CCHC domain containing 10"
                     /db_xref="GeneID:67966"
                     /db_xref="MGI:MGI:1196228"
     exon            1..53
                     /gene="Zcchc10"
                     /gene_synonym="2410141K03Rik; D11Ertd416e"
                     /inference="alignment:Splign:2.1.0"
     CDS             13..549
                     /gene="Zcchc10"
                     /gene_synonym="2410141K03Rik; D11Ertd416e"
                     /codon_start=1
                     /product="zinc finger CCHC domain-containing protein 10"
                     /protein_id="NP_080755.2"
                     /db_xref="CCDS:CCDS24675.1"
                     /db_xref="GeneID:67966"
                     /db_xref="MGI:MGI:1196228"
                     /translation="MATPMHRLIARRKAEANKQHVRCQKCLEFGHWTYECKGKRKYLH
                     RPSRTAELKKALKEKENRLLLQSIGETNIEKKIKKKKRSKSVTSSSTSSSDSSASESS
                     SESETSASSSSEDSDSDESLSSSSSSSSSSACSSSSSSSSSSSSSDSDSSSSSSSSSS
                     SSESSSDDEPQKKKKKKK"
     exon            54..212
                     /gene="Zcchc10"
                     /gene_synonym="2410141K03Rik; D11Ertd416e"
                     /inference="alignment:Splign:2.1.0"
     exon            213..257
                     /gene="Zcchc10"
                     /gene_synonym="2410141K03Rik; D11Ertd416e"
                     /inference="alignment:Splign:2.1.0"
     exon            258..1257
                     /gene="Zcchc10"
                     /gene_synonym="2410141K03Rik; D11Ertd416e"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1166..1171
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zcchc10"
                     /gene_synonym="2410141K03Rik; D11Ertd416e"
                     /note="hexamer: AATAAA"
     polyA_site      1186
                     /gene="Zcchc10"
                     /gene_synonym="2410141K03Rik; D11Ertd416e"
                     /note="major polyA site"
ORIGIN      
        1 agccgctcca agatggcgac tcccatgcat cggctcatag ctcgaaggaa agctgaagcc
       61 aataagcaac atgtaagatg tcagaaatgc ttggaatttg gacattggac ttatgaatgc
      121 aaagggaaaa gaaagtacct acacagacct tcgagaacgg cagagctgaa gaaagcttta
      181 aaagaaaaag aaaatagatt attgctgcaa agcataggag agaccaacat agagaaaaag
      241 atcaagaaga agaagaggtc taagagtgtc acgagttcca gtacctctag cagtgacagt
      301 tcggccagtg agtcttcatc agagagtgag acatccgcct catcctcttc agaagacagt
      361 gactcagatg aaagcctctc tagctcctcc tcctcctcct cttcctcggc ctgttcgtct
      421 tcctcttcct cctcttcctc ctcctcctcc tcggactcgg actccagctc gtccagcagc
      481 agcagcagca gcagttctga gagcagctct gatgatgagc cacagaagaa gaaaaagaag
      541 aagaaataga gctctgtaca ccgggacggt ggacccaaag cacctgtgac tcccagggga
      601 actgaaaacc tgctcaagca agcaagccag acggccagaa gtgttaaata aaatccagaa
      661 ctttccaagt atttactatt gtatagaata tttaaaaaaa aaagatgtta catatataaa
      721 gatgtttatt ttaggaatga atatgggttt ttgctgttgc ttttcttttt gtaaagactg
      781 ggtctcattt tgtaggtcta gctggccttg aatttgatat gtagaggaga ctggccttga
      841 tttcagagag atcttctaat gttgggacta aagatatgtg ccaccatgct cagcttttgt
      901 ttttaacttt tttttttaaa tatttgaagt ctatctgtag tacataatca aaattgaaaa
      961 ccaggaaatc tatttcattg acaggcaaaa gtcatttttt tcctgccttt gaaatgaatg
     1021 ctttatgtgg gtatatgtta cagtgtgtat gggacagtct ttgactgtac tgtatcagaa
     1081 tatcaagaag tttcttgttc tcttttgcct gtgtttatta tgtgagattt aatgcattgt
     1141 tattataaat ggttttccta ctgttaataa atgtgctcta tttttatgtt tgtatcagaa
     1201 aattctgatt tttctattct gaatctataa aatcaaagaa ccccatacag aacattg
//
