LOCUS       NM_178404               4916 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus zinc finger CCCH type containing 6 (Zc3h6), mRNA.
ACCESSION   NM_178404 NM_026245
VERSION     NM_178404.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4916)
  AUTHORS   Guo,G., Huss,M., Tong,G.Q., Wang,C., Li Sun,L., Clarke,N.D. and
            Robson,P.
  TITLE     Resolution of cell fate decisions revealed by single-cell gene
            expression analysis from zygote to blastocyst
  JOURNAL   Dev Cell 18 (4), 675-685 (2010)
   PUBMED   20412781
REFERENCE   2  (bases 1 to 4916)
  AUTHORS   Hughes,D.S., Keynes,R.J. and Tannahill,D.
  TITLE     Extensive molecular differences between anterior- and
            posterior-half-sclerotomes underlie somite polarity and spinal
            nerve segmentation
  JOURNAL   BMC Dev Biol 9, 30 (2009)
   PUBMED   19463158
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL833780.6.
            
            On Sep 2, 2007 this sequence version replaced NM_178404.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR1660811.238926.1,
                                           SRR1660817.22456.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131, SAMN01164132
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-435               AL833780.6         52722-53156
            436-616             AL833780.6         76411-76591
            617-739             AL833780.6         78479-78601
            740-1007            AL833780.6         82925-83192
            1008-1144           AL833780.6         87462-87598
            1145-1261           AL833780.6         91316-91432
            1262-1373           AL833780.6         92033-92144
            1374-1483           AL833780.6         95736-95845
            1484-1737           AL833780.6         96987-97240
            1738-2240           AL833780.6         99656-100158
            2241-2474           AL833780.6         100720-100953
            2475-4916           AL833780.6         101442-103883
FEATURES             Location/Qualifiers
     source          1..4916
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 62.63 cM"
     gene            1..4916
                     /gene="Zc3h6"
                     /gene_synonym="4631426G04Rik; 4833425H18Rik; mKIAA2035;
                     Zc3hdc6"
                     /note="zinc finger CCCH type containing 6"
                     /db_xref="GeneID:78751"
                     /db_xref="MGI:MGI:1926001"
     exon            1..435
                     /gene="Zc3h6"
                     /gene_synonym="4631426G04Rik; 4833425H18Rik; mKIAA2035;
                     Zc3hdc6"
                     /inference="alignment:Splign:2.1.0"
     CDS             404..3937
                     /gene="Zc3h6"
                     /gene_synonym="4631426G04Rik; 4833425H18Rik; mKIAA2035;
                     Zc3hdc6"
                     /note="zinc finger CCCH type domain containing 6"
                     /codon_start=1
                     /product="zinc finger CCCH domain-containing protein 6"
                     /protein_id="NP_848491.2"
                     /db_xref="CCDS:CCDS50707.1"
                     /db_xref="GeneID:78751"
                     /db_xref="MGI:MGI:1926001"
                     /translation="MTDSEHAGHDREDGELEDGEIDDAGFEETQDQEAKENEKQKNEK
                     AYRKSRKKHKKEREKKKSKRRKHEKHKHNSPSGDDSSDYSLDSDVERMQSSRKKRTSS
                     YRDYDVPFSQHRRISGSYMTSKKSQHNKKTNSKEYAESSFYSDDYFGNYSDDNFGNYS
                     NQEGEEDFSSQLKYYRQSQESSGSSFSKESGKKLRSKGSPPGTEYRIKSFDVSHGHLL
                     PKKIRRKEHCGARVIKGPYVFSGMDDFQEYSKPGKKWKVMTQEFINQHTVEHKGKQIC
                     KYFLEGRCIKGDHCKFNHDAELEKKKEVCKYYLQGYCTKGENCIYMHSEFPCKFYHSG
                     AKCYQGDKCKFSHDDLTKETRKLLDKVLNADEELVNEDERELEELRKRGITPLPKPPP
                     GVGLLPTPSEHFPFSDPEDDFETDLSDDMKKIPSLFEIVVKPTVDLAHKIGKKPPAFY
                     NSTSPPGPQFEESSHCPQRMYSSESSPGPGSKVPQGCESPVRHPGSPGHHPCVGPPGP
                     PMQENPSLLPSSSEIVGPHSQAGGLVQLDTLPSMGGAYHSPGFPGHSVKVPRESHSSP
                     ASLYQQMPSEMQRSADSESMQGSAEFYDDYYPQHAAHNFQPPDNSADEMWHEEFAQQQ
                     PPIARDTAHLGSGPNSSSRMTSHCPLSASGLPPAVQRALFIPLTQRYQEDEEPAGTQP
                     HRASSKEEDDTANWYSSSEEEEGSGVKSILRTLQKQTGTLRNQQLPPTELSVPTDPRL
                     AKEKRKRNQVVDPRLRTVPRQDIKKPHESVPVDLRLVWDPKKLRGNGGAPGGSSARGA
                     EFDLRHTNAGANHKSKRREDDDEDSERELREKAFLIPLDSSPGIVLQDPRSQLRQFSH
                     IKMDIILNKPNFAKHIVWAPEDLLPVPLPKPDPVSSINLPLPPLIADQRLNRLWNTKS
                     DHQGALSLDPTSAAKAKLSLTHREGCLEQSGDLHSSGGKLGDPRLQKNFDPRLHRLPN
                     TESHQVTAKDSHSSRSALPLARWNPALSQSSTAAPINVASVTPPLYAPKLSSEGLPPG
                     TSSSVLSGISLYDPRDKGSLSAMELSTISSGENTESQKKSGLKNSDKNQPSPGEVIVP
                     QNTTANLEVPVDGPVDMQTDILRSADKVQVPAVHSLPIQALTGLLRPPYSDPRQAREP
                     GQASPTPDEETDDKPLKEVFKTFDPTASPFC"
     exon            436..616
                     /gene="Zc3h6"
                     /gene_synonym="4631426G04Rik; 4833425H18Rik; mKIAA2035;
                     Zc3hdc6"
                     /inference="alignment:Splign:2.1.0"
     exon            617..739
                     /gene="Zc3h6"
                     /gene_synonym="4631426G04Rik; 4833425H18Rik; mKIAA2035;
                     Zc3hdc6"
                     /inference="alignment:Splign:2.1.0"
     exon            740..1007
                     /gene="Zc3h6"
                     /gene_synonym="4631426G04Rik; 4833425H18Rik; mKIAA2035;
                     Zc3hdc6"
                     /inference="alignment:Splign:2.1.0"
     exon            1008..1144
                     /gene="Zc3h6"
                     /gene_synonym="4631426G04Rik; 4833425H18Rik; mKIAA2035;
                     Zc3hdc6"
                     /inference="alignment:Splign:2.1.0"
     exon            1145..1261
                     /gene="Zc3h6"
                     /gene_synonym="4631426G04Rik; 4833425H18Rik; mKIAA2035;
                     Zc3hdc6"
                     /inference="alignment:Splign:2.1.0"
     exon            1262..1373
                     /gene="Zc3h6"
                     /gene_synonym="4631426G04Rik; 4833425H18Rik; mKIAA2035;
                     Zc3hdc6"
                     /inference="alignment:Splign:2.1.0"
     exon            1374..1483
                     /gene="Zc3h6"
                     /gene_synonym="4631426G04Rik; 4833425H18Rik; mKIAA2035;
                     Zc3hdc6"
                     /inference="alignment:Splign:2.1.0"
     exon            1484..1737
                     /gene="Zc3h6"
                     /gene_synonym="4631426G04Rik; 4833425H18Rik; mKIAA2035;
                     Zc3hdc6"
                     /inference="alignment:Splign:2.1.0"
     exon            1738..2240
                     /gene="Zc3h6"
                     /gene_synonym="4631426G04Rik; 4833425H18Rik; mKIAA2035;
                     Zc3hdc6"
                     /inference="alignment:Splign:2.1.0"
     exon            2241..2474
                     /gene="Zc3h6"
                     /gene_synonym="4631426G04Rik; 4833425H18Rik; mKIAA2035;
                     Zc3hdc6"
                     /inference="alignment:Splign:2.1.0"
     exon            2475..4916
                     /gene="Zc3h6"
                     /gene_synonym="4631426G04Rik; 4833425H18Rik; mKIAA2035;
                     Zc3hdc6"
                     /inference="alignment:Splign:2.1.0"
     regulatory      4894..4899
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zc3h6"
                     /gene_synonym="4631426G04Rik; 4833425H18Rik; mKIAA2035;
                     Zc3hdc6"
                     /note="hexamer: AATAAA"
     polyA_site      4916
                     /gene="Zc3h6"
                     /gene_synonym="4631426G04Rik; 4833425H18Rik; mKIAA2035;
                     Zc3hdc6"
                     /note="major polyA site"
ORIGIN      
        1 gagccgcctg tttcgggtgc cgccatgttg gtgaggagaa atcaccgtta cggccactgt
       61 ccaaatcccc gcgtcgctgc acgccgcccg ccggctccca cgcctcagcc tccggcggcg
      121 aatacagact agagcggcag cgccggcagc gcggggccgt tgcccagtct ttgcagttag
      181 agccccatct ctctggcgtt ggttgttaat agactggaaa gtctgtgtct gtgtcgctca
      241 ctagtaaccg tgagttttta ccacttcgtc acctgtcggc ggcggccggg gacagggttg
      301 cccgcaggcg gcgcaggggt cctccccgcg ccccgctgcc gccgccaccg ccgccgccgg
      361 cctccagacc tgccctccag ccccgccccg ttcttgacca aacatgacag actctgaaca
      421 tgcagggcac gacagagaag atggtgaatt agaagatgga gaaatagatg atgcaggatt
      481 tgaagaaaca caagatcagg aagcaaaaga aaatgaaaag caaaaaaatg agaaagccta
      541 cagaaaatca aggaaaaaac acaagaaaga aagagaaaag aaaaaatcca aaaggaggaa
      601 acacgagaaa cataagcata actctccatc tggtgatgat agttctgact acagcctgga
      661 ctcagatgtt gaacgtatgc aaagttcccg taagaaaaga accagctcct acagggatta
      721 tgatgttcca ttttctcagc atagacgtat atcaggaagt tacatgacat caaagaagag
      781 tcaacataac aaaaaaacta atagtaaaga atatgctgag tccagtttct acagtgatga
      841 ctactttggt aactacagtg atgacaactt tggtaactat agtaaccagg aaggagaaga
      901 agatttctcc agtcagctga aatactatcg acagtcccag gagtcctcag ggtcatcgtt
      961 ctctaaggaa tcagggaaga aactgagaag taaaggaagc ccaccaggaa ctgaatatcg
     1021 gattaaaagt tttgatgtta gtcatggaca tcttttgccg aagaaaatca gaagaaaaga
     1081 acactgtggg gcacgagtca ttaaagggcc ttatgtcttt tcaggaatgg atgactttca
     1141 agagtacagc aaaccaggga aaaagtggaa agttatgact caggagttta ttaaccagca
     1201 cacagtggaa cacaaaggaa aacagatctg taaatacttc ctggaaggga gatgtattaa
     1261 gggagatcat tgtaaattta atcatgatgc agaattggag aagaaaaagg aggtctgcaa
     1321 atattattta cagggatatt gtaccaaagg agagaactgc atttacatgc atagtgaatt
     1381 tccttgcaag ttctatcata gtggagcaaa gtgctaccaa ggagacaagt gtaagttttc
     1441 ccatgatgat ctgactaaag aaacaaggaa acttttggac aaagtgttga atgcggatga
     1501 agaacttgta aatgaagacg aaagagaatt agaagaactt aggaaacgcg gcataactcc
     1561 tctccccaaa ccacccccgg gagtcggcct tctcccgacc ccatcagagc attttccgtt
     1621 ttctgatcct gaagatgatt ttgagacgga tctttctgat gatatgaaga aaattccatc
     1681 tctttttgaa atagttgtaa aacctactgt ggatttagca cataaaattg ggaagaaacc
     1741 accagcattt tacaacagta cctcaccacc aggaccacag tttgaggaaa gcagtcactg
     1801 tccacagcgt atgtacagtt ctgagtcaag tccaggtcca ggatctaaag ttcctcaagg
     1861 atgtgagagt cctgtgaggc acccaggctc ccctggacac cacccttgtg taggacctcc
     1921 tggtccacca atgcaagaga acccatcttt gctacccagt tcatctgaaa ttgtaggccc
     1981 tcatagtcaa gctggagggc ttgttcagct ggacacgcta ccaagcatgg gtggagctta
     2041 ccattccccg ggctttccag gacactcggt gaaagtccct agagagagtc acagctctcc
     2101 agcttcactg taccagcaaa tgcctagtga gatgcaacgc agtgccgact ctgagtccat
     2161 gcaaggctca gctgaatttt atgatgatta ctacccacag catgctgcac ataattttca
     2221 accacctgat aactctgctg atgagatgtg gcatgaagag tttgcacagc agcagcctcc
     2281 cattgctcgt gacacagcac accttgggag tgggcccaat tccagcagca gaatgacaag
     2341 tcactgccct ctgtctgctt cagggctccc tcctgcagtg cagagagctc ttttcatccc
     2401 gttgactcag agataccaag aagatgaaga accagctggc acccagcctc atagagcatc
     2461 aagcaaggaa gaagatgata cagctaactg gtattccagt agtgaagagg aagaaggaag
     2521 tggtgtcaag tcaatactga ggacattaca gaaacaaaca ggaacactga gaaaccagca
     2581 actccctccc acagagctca gcgttcctac tgatccaaga ctcgctaaag agaaaaggaa
     2641 aagaaatcaa gtggttgacc caagacttcg gactgtccca aggcaagata ttaaaaagcc
     2701 gcatgagtct gtcccagtgg accttagact tgtgtgggac cccaagaaat taagagggaa
     2761 tggaggtgct cctgggggct cttcagctag gggagcagag tttgacttac gtcatacaaa
     2821 tgctggtgca aatcacaaat ccaaaagaag agaggatgat gatgaagatt cagaaagaga
     2881 actaagagaa aaggccttct taataccttt ggattcttca cctggcatag tcctccagga
     2941 tccaaggtca cagttaagac aattcagtca tattaaaatg gacattattc taaacaaacc
     3001 caactttgca aaacacattg tgtgggctcc agaagactta cttccagtac ctttacctaa
     3061 acctgatcca gtatcttcaa tcaacttacc tctgccccca cttatagctg accagaggct
     3121 caatagatta tggaatacaa agagtgatca tcagggtgcc ctgagccttg atccaacatc
     3181 agcagccaaa gccaaactga gtctaacaca cagagagggc tgcttagagc agtctggaga
     3241 cttacacagt tcaggaggta aactaggaga ccctaggctg caaaagaatt ttgatcctag
     3301 gcttcataga ctgcccaata cagagtctca tcaagtgact gcaaaggatt cacactcatc
     3361 aaggagtgcc ctgcccttag ccagatggaa ccctgctttg tcacagtcct caacagcagc
     3421 acctattaat gttgcttctg tgactcctcc cctgtatgcc cccaaactct cttcagaagg
     3481 cctcccaccg ggaacttcaa gttcagttct tagtggcatt agtttgtatg atcctaggga
     3541 taaaggttcg ttatctgcaa tggagctatc aaccatttct tcaggagaaa atacagagag
     3601 ccagaaaaaa agtggcttaa aaaatagtga taaaaaccag ccttctcctg gagaagtgat
     3661 cgtaccacag aacactactg caaacttgga agtccctgtt gatgggccag tagacatgca
     3721 gacagatatt ctcaggagtg ctgataaggt tcaggtccct gctgtgcaca gtcttcctat
     3781 tcaggcctta acaggcttac ttagacctcc atacagtgat ccaaggcagg caagagaacc
     3841 aggacaggca agcccaaccc cagatgaaga aacagatgac aaacctctga aagaggtttt
     3901 taagacgttt gatccaactg catcaccgtt ttgttagctg ttgtgtaatt aagctgttct
     3961 cacgctgacg atcacagatc tctgctgttt tgtaacttgt ttacctctat agtttattta
     4021 ttttttaaat tataaacatt tttcagctgc tagtatcaga accacatgaa cttctatcct
     4081 ctaaagtctg tggtatttta tataatattt ttataacttc aagagactgt agtatagaaa
     4141 tacatatcat gttaggttta gtaaaagtat ttttattgtt aaaaatgaac catcatgaac
     4201 tcaacactca gcctgagtat atgccagttg tctttcttaa tcattgttta ggttaacaat
     4261 gaccactttt atatggttgt ttagtttcaa gcaatatgat atatgttact tttgagaatc
     4321 agtattttaa ctaggatcct ttctgtcagc acaaaactga ttagtgtgta atgccaactg
     4381 ctacgtaaaa tgcaaggtga aaatatttaa aaccataatt agctcacttt attagcattg
     4441 gcaatactgt ttgtatacat gaagcacttg aatgttgtat cttttaaaag tattttattg
     4501 tacactgtat catagaagct gaaggaatat aaatgttttg ctatagtaaa atttttccag
     4561 gttctctaac agaactttta aattttaagt tttcatatta aatagttatg agtttattgc
     4621 tgtatcacat tgtgatgttt atgtatttca gtgttttgtc tttagcaaca taatttttat
     4681 ctctttcaaa tgatgtaact gcaataattg tgctcatcat gactgtggca atttttaaca
     4741 gaattttcaa agtgagcctg tagtaattat tatgctgata atgttttaaa tgtctagatt
     4801 ctatattttc tcttgcatag caaaaacaaa acaacaaaaa ggacaaaaat caccccactg
     4861 agatggcagg tatattccaa tgtatatggt tccaataaac aacattttag atctca
//
