LOCUS       NM_172121               3370 bp    mRNA    linear   ROD 14-JUN-2024
DEFINITION  Mus musculus zinc finger CCCH type containing 3 (Zc3h3), transcript
            variant 1, mRNA.
ACCESSION   NM_172121
VERSION     NM_172121.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3370)
  AUTHORS   Collart,C., Remacle,J.E., Barabino,S., van Grunsven,L.A.,
            Nelles,L., Schellens,A., Van de Putte,T., Pype,S., Huylebroeck,D.
            and Verschueren,K.
  TITLE     Smicl is a novel Smad interacting protein and cleavage and
            polyadenylation specificity factor associated protein
  JOURNAL   Genes Cells 10 (9), 897-906 (2005)
   PUBMED   16115198
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC116520.14 and AC116393.10.
            
            On Feb 2, 2023 this sequence version replaced NM_172121.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC060682.1, AJ516034.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-74                AC116520.14        30695-30768         c
            75-1383             AC116520.14        28101-29409         c
            1384-1580           AC116520.14        26312-26508         c
            1581-1731           AC116393.10        189474-189624       c
            1732-1916           AC116393.10        165399-165583       c
            1917-1959           AC116393.10        159460-159502       c
            1960-2118           AC116393.10        159226-159384       c
            2119-2188           AC116393.10        159012-159081       c
            2189-2320           AC116393.10        156936-157067       c
            2321-2505           AC116393.10        137486-137670       c
            2506-2849           AC116393.10        136569-136912       c
            2850-3370           AC116393.10        134376-134896       c
FEATURES             Location/Qualifiers
     source          1..3370
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="15"
                     /map="15 34.84 cM"
     gene            1..3370
                     /gene="Zc3h3"
                     /gene_synonym="Kiaa0150; Smicl; Zc3hdc3"
                     /note="zinc finger CCCH type containing 3"
                     /db_xref="GeneID:223642"
                     /db_xref="MGI:MGI:2663721"
     exon            1..74
                     /gene="Zc3h3"
                     /gene_synonym="Kiaa0150; Smicl; Zc3hdc3"
                     /inference="alignment:Splign:2.1.0"
     exon            75..1383
                     /gene="Zc3h3"
                     /gene_synonym="Kiaa0150; Smicl; Zc3hdc3"
                     /inference="alignment:Splign:2.1.0"
     exon            1384..1580
                     /gene="Zc3h3"
                     /gene_synonym="Kiaa0150; Smicl; Zc3hdc3"
                     /inference="alignment:Splign:2.1.0"
     exon            1581..1731
                     /gene="Zc3h3"
                     /gene_synonym="Kiaa0150; Smicl; Zc3hdc3"
                     /inference="alignment:Splign:2.1.0"
     exon            1732..1916
                     /gene="Zc3h3"
                     /gene_synonym="Kiaa0150; Smicl; Zc3hdc3"
                     /inference="alignment:Splign:2.1.0"
     exon            1917..1959
                     /gene="Zc3h3"
                     /gene_synonym="Kiaa0150; Smicl; Zc3hdc3"
                     /inference="alignment:Splign:2.1.0"
     exon            1960..2118
                     /gene="Zc3h3"
                     /gene_synonym="Kiaa0150; Smicl; Zc3hdc3"
                     /inference="alignment:Splign:2.1.0"
     exon            2119..2188
                     /gene="Zc3h3"
                     /gene_synonym="Kiaa0150; Smicl; Zc3hdc3"
                     /inference="alignment:Splign:2.1.0"
     exon            2189..2320
                     /gene="Zc3h3"
                     /gene_synonym="Kiaa0150; Smicl; Zc3hdc3"
                     /inference="alignment:Splign:2.1.0"
     exon            2321..2505
                     /gene="Zc3h3"
                     /gene_synonym="Kiaa0150; Smicl; Zc3hdc3"
                     /inference="alignment:Splign:2.1.0"
     exon            2506..2849
                     /gene="Zc3h3"
                     /gene_synonym="Kiaa0150; Smicl; Zc3hdc3"
                     /inference="alignment:Splign:2.1.0"
     exon            2850..3370
                     /gene="Zc3h3"
                     /gene_synonym="Kiaa0150; Smicl; Zc3hdc3"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3347..3352
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zc3h3"
                     /gene_synonym="Kiaa0150; Smicl; Zc3hdc3"
                     /note="hexamer: AATAAA"
     polyA_site      3370
                     /gene="Zc3h3"
                     /gene_synonym="Kiaa0150; Smicl; Zc3hdc3"
                     /note="major polyA site"
ORIGIN      
        1 gtctggctag gcgtcgcgga ctccggagat ggaggaaaag gagcagctgc ggcggcagat
       61 acgcctcctg cagggtctaa ttgatgacta taaaacactc cacggcaatg gccctgccct
      121 gggcaactca tcagctactc ggtggcagcc acccatgttc ccgggtggca ggacctttgg
      181 cgcccgctac tcccgtccaa gtcggagggg cttctcctca caccatggcc cttcgtggcg
      241 caagaaatac tcccttgtga atcagcctgt ggaatcttct gacccagcca gcgatcctgc
      301 ttttcagaca tccctcaggt ctgaggatag ccagcatcct gaaccccagc agtatgtact
      361 ggagagacag gtccagctca gtccagatca gaatatggtt attaagatca agccaccatc
      421 aaagtcaggt gccatcaatg cttcaggggt ccagcggggg tccttggaag gctgtgatga
      481 cccctcttgg agtggccaaa gaccccaagg aagtgaggtt gaggtccctg gtggacaact
      541 gcagcctgca aggccaggaa gaaccaaggt gggttacagt gtggacgacc ccctcttggt
      601 ctgccagaag gagcctggca agcctcgggt agtgaagtct gtgggcaggg tgagtgacag
      661 ctctcccgag catcggcgga cagtcagtga aaatgaagtg gccctcaggg tacacttccc
      721 atctgtcctg ccccatcaca ctgctgtggc tctgggcagg aaggtaggcc ctcattctac
      781 cagctattct gaacagttca ttggagacca aagagcaaac actggccact cagaccagcc
      841 agcttccttg gggccagtgg tggcttcagt cagaccagca acagccaggc aggtcaggga
      901 ggcctcactg ctcgtgtcct gtcgaaccag caagtttcgg aaaaacaact acaaatgggt
      961 agctgcctca gaaaagagcc cacgggtcgc tcggagagcc ctcagtccca gaacaactct
     1021 ggagagcggg aacaaggcca ctttgggtac agttggaaag acagagaagc cacagcctaa
     1081 agttgaccca gaggtgaggc cggagaaact ggccacacca tccaagcctg gcctctctcc
     1141 cagcaagtac aagtggaagg cttccagccc gtctgcttcc tcctcttcct ctttccgttg
     1201 gcagtctgag gctggcagca aggaccatac ttctcagctc tccccagtcc catctaggcc
     1261 cacatcaggg gacagaccag cagggggacc cagcagcttg aagcccctct ttggagagtc
     1321 acagctctca gcttacaaag tgaagagccg gaccaagatt atccggaggc ggggcaatac
     1381 cagcattcct ggggacaaga agaacagccc tacaactgcc accaccagca aaaaccatct
     1441 tacccagcga cggagacagg ccctccgggg gaagaatagc ccggttctaa ggaagactcc
     1501 ccacaagggt ctgatgcagg tcaacaggca ccggctctgc tgcctgccgt ccagccggac
     1561 ccacctctcc accaaggaag cttccagtgt gcacatgggg attccaccct ccaataaggt
     1621 gatcaagacc cgctaccgca ttgttaagaa gaccccaagc tcttcctttg gtgctccatc
     1681 cttcccctca tctctaccct cctggcgggc ccggcgcatc ccattatcca ggtccctagt
     1741 gctaaaccgc cttcgtccag caatcactgg gggagggaaa gccccacctg gtacccctcg
     1801 atggcgcaac aaaggctacc gctgcattgg aggggttctg tacaaggtgt ctgccaacaa
     1861 gctctccaaa acttctagca ggcccagtga tggcaacagg accctcctcc gcacaggacg
     1921 cctggaccct gctaccacct gcagtcgttc cttggccagc cgggccatcc agcggagcct
     1981 ggctatcatc cggcaggcga agcagaagaa agagaagaag agagagtact gcatgtacta
     2041 caaccgcttt ggcaggtgta accgtggcga atgctgcccc tacatccatg accctgagaa
     2101 ggtggccgtg tgcaccagat ttgtccgagg cacatgcaag aagacagatg ggtcctgccc
     2161 tttctctcac catgtgtcca aggaaaagat gcctgtgtgc tcctactttc tgaaggggat
     2221 ctgcagcaac agcaactgcc cctacagcca tgtgtacgtg tcccgcaagg ctgaagtctg
     2281 cagtgacttc ctcaaaggct actgcccatt gggtgcaaag tgcaagaaga agcacacgct
     2341 gctgtgtcct gactttgccc gcaggggtat ttgtccccgt ggctcccagt gccagctgct
     2401 ccatcgtaac cagaagcgac atggccggcg gacagctgca cctcctatcc ctgggcccag
     2461 tgatggagcc cccagaagca aggcctcagc tggccacgta ctcaggaagc ctactactac
     2521 tcagcgctct gtcagacaga tgtccagtgg tctggcttcc ggagctgagg ccccagcctc
     2581 cccacctccc tccccaaggg tattagcctc cacctctacc ctgtcttcaa aggccaccgc
     2641 tgcctcctct ccttccccct ctccctctac tagctcccca gccccttcct tggagcagga
     2701 agaagctgtc tctgggacag gctcaggaac aggctccagt ggcctctgca agctgccatc
     2761 cttcatctcc ctgcactcct ccccaagccc aggaggacag actgagactg ggccccaggc
     2821 ccccaggagc cctcgcacca aggactcagg gaagccgcta cacatcaaac cacgcctgtg
     2881 aggccccctg aggaccagcc cgcacctacc tcagaccctc acccctggag aggatgaagg
     2941 ctctacccac aactgctcct gaggagaagc agcctgccac tgagcccagc tggggctcta
     3001 accaggagtc atagctcctc ccacttggct cctagcctct ggaggccttt gtgtgcccag
     3061 gccttgttct ccctcaagcc aaggccctgt ccattccctg ttcctctccc tccccttctc
     3121 ccctcctccc ctctgcccct cctcccctcc aaggcaccca gcctcactct aggacttgtc
     3181 cctggctccc catccatcag ggtgccatgt gaggttcatc ccagcctgtc tcctgtggtg
     3241 gcattggcag ctgtaggact ggtgccccca accctcccta cccaggactc ctgcccaggg
     3301 aagaggctaa tggccaggcc tctctggtgg gtattttatg ttcagcaata aaggttttat
     3361 cctgtgtcta
//
