LOCUS       NM_001029994            3742 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus zinc finger CCCH-type containing 18 (Zc3h18),
            transcript variant 2, mRNA.
ACCESSION   NM_001029994
VERSION     NM_001029994.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3742)
  AUTHORS   Okazaki,N., Kikuno,R., Ohara,R., Inamoto,S., Koseki,H., Hiraoka,S.,
            Saga,Y., Kitamura,H., Nakagawa,T., Nagase,T., Ohara,O. and Koga,H.
  TITLE     Prediction of the coding sequences of mouse homologues of FLJ
            genes: the complete nucleotide sequences of 110 mouse
            FLJ-homologous cDnas identified by screening of terminal sequences
            of cDNA clones randomly sampled from size-fractionated libraries
  JOURNAL   DNA Res 11 (2), 127-135 (2004)
   PUBMED   15449545
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY235998.1, CD348551.1 and BC030495.1.
            
            Transcript Variant: This variant (2) lacks an alternate exon,
            compared to variant 1, but maintains the reading frame. The
            resulting protein (isoform b) is shorter than isoform a.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC030495.1, SRR7652917.934151.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-31                BY235998.1         8-38
            32-565              CD348551.1         1-534
            566-3742            BC030495.1         546-3722
FEATURES             Location/Qualifiers
     source          1..3742
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 70.98 cM"
     gene            1..3742
                     /gene="Zc3h18"
                     /gene_synonym="1190001B23Rik; 5830416A07Rik; Nhn1"
                     /note="zinc finger CCCH-type containing 18"
                     /db_xref="GeneID:76014"
                     /db_xref="MGI:MGI:1923264"
     exon            1..185
                     /gene="Zc3h18"
                     /gene_synonym="1190001B23Rik; 5830416A07Rik; Nhn1"
                     /inference="alignment:Splign:2.1.0"
     exon            186..790
                     /gene="Zc3h18"
                     /gene_synonym="1190001B23Rik; 5830416A07Rik; Nhn1"
                     /inference="alignment:Splign:2.1.0"
     CDS             200..3046
                     /gene="Zc3h18"
                     /gene_synonym="1190001B23Rik; 5830416A07Rik; Nhn1"
                     /note="isoform b is encoded by transcript variant 2;
                     conserved nuclear protein Nhn1; zinc finger CCCH
                     domain-containing protein 18; nuclear protein NHN1"
                     /codon_start=1
                     /product="zinc finger CCCH domain-containing protein 18
                     isoform b"
                     /protein_id="NP_001025165.1"
                     /db_xref="CCDS:CCDS22736.1"
                     /db_xref="GeneID:76014"
                     /db_xref="MGI:MGI:1923264"
                     /translation="MDVAESPELDPHSPEDEEQPALSDDDILRESGSEQDLDGAGERA
                     SDLEEEENATRVQSQEETRSDEEDRASEPKSQDQDSEAHELSRGPAGSPCEEGDDVEE
                     DGTSDLRDEASSVTRELDEHELDYDEEVPEEPAPAAQEEEAEKAGAEEEEEKGEGAPG
                     EEGKPDVQSVGEQEPTEAAKEKKKEDDDGEIDDGEIDDDDLEEGEVKDPSDRKVRPRP
                     TCRFFMKGNCTWGMSCRFIHPGVNDKGNYSLITKAEPFPPNGAPPLGPHPLMPANPWG
                     GPVVDEILPPPPPEPPTESAWERGLRHAKEVLKKATIRKEQEPDFEEKRFTVTIGEDD
                     REFDKENEVFRDWNSRVPRDVRDTTLEPYADPYYDYEIERFWRGGQYENFRVQYTEAE
                     PYHNYRERERERERENRQRERERERERDRERERRQRERERERERERDKERQRRKEEWE
                     RERAKRDEKDRQHRDRDRDKDREKDKEKPKPRSPQPPSRQAEPPKKESTSVGPQVKRA
                     DEWKDPWRRSKSPKKKLGVSVSPSRARRRRKTSASSASASNSSRSSSRSSSYSGSGSS
                     RSRSRSSSYSSYSSRSSRHSSFSGSRSRSRSFSSSPSPSPTPSPHRPPVRTKGEPAPP
                     PGKAGEKSIKKPAPPPAPPQATKTTAPGPEPAKPGDLREARRKERQTRTPPRRRTLSG
                     SGSGSGSSYSGSSSRSRSLSVSSVSSVSSATSSSSSVHSVDSDDMYADLASPVSSASS
                     RSPTPAQTKKERGKSKKEDGVREEKRRRDPSAQPPKSSKAPAGGKASQQAAAPQPAVP
                     GQPQQGSFVAHKEIKLTLLNKAADKGSRKRYEPSDKDRQSPPAKKANLSPDRGSRDRK
                     SGGRMGSPKPERQRGQNAKAPAAPADRKRPLSPQSKGSSKVTSVPGKATDTATAGTKS
                     GKASTLSRREELLKQLKAVEDAIARKRAKIPGKV"
     exon            791..875
                     /gene="Zc3h18"
                     /gene_synonym="1190001B23Rik; 5830416A07Rik; Nhn1"
                     /inference="alignment:Splign:2.1.0"
     exon            876..1024
                     /gene="Zc3h18"
                     /gene_synonym="1190001B23Rik; 5830416A07Rik; Nhn1"
                     /inference="alignment:Splign:2.1.0"
     exon            1025..1117
                     /gene="Zc3h18"
                     /gene_synonym="1190001B23Rik; 5830416A07Rik; Nhn1"
                     /inference="alignment:Splign:2.1.0"
     exon            1118..1275
                     /gene="Zc3h18"
                     /gene_synonym="1190001B23Rik; 5830416A07Rik; Nhn1"
                     /inference="alignment:Splign:2.1.0"
     exon            1276..1393
                     /gene="Zc3h18"
                     /gene_synonym="1190001B23Rik; 5830416A07Rik; Nhn1"
                     /inference="alignment:Splign:2.1.0"
     exon            1394..1662
                     /gene="Zc3h18"
                     /gene_synonym="1190001B23Rik; 5830416A07Rik; Nhn1"
                     /inference="alignment:Splign:2.1.0"
     exon            1663..1854
                     /gene="Zc3h18"
                     /gene_synonym="1190001B23Rik; 5830416A07Rik; Nhn1"
                     /inference="alignment:Splign:2.1.0"
     exon            1855..1980
                     /gene="Zc3h18"
                     /gene_synonym="1190001B23Rik; 5830416A07Rik; Nhn1"
                     /inference="alignment:Splign:2.1.0"
     exon            1981..2085
                     /gene="Zc3h18"
                     /gene_synonym="1190001B23Rik; 5830416A07Rik; Nhn1"
                     /inference="alignment:Splign:2.1.0"
     exon            2086..2229
                     /gene="Zc3h18"
                     /gene_synonym="1190001B23Rik; 5830416A07Rik; Nhn1"
                     /inference="alignment:Splign:2.1.0"
     exon            2230..2295
                     /gene="Zc3h18"
                     /gene_synonym="1190001B23Rik; 5830416A07Rik; Nhn1"
                     /inference="alignment:Splign:2.1.0"
     exon            2296..2456
                     /gene="Zc3h18"
                     /gene_synonym="1190001B23Rik; 5830416A07Rik; Nhn1"
                     /inference="alignment:Splign:2.1.0"
     exon            2457..2656
                     /gene="Zc3h18"
                     /gene_synonym="1190001B23Rik; 5830416A07Rik; Nhn1"
                     /inference="alignment:Splign:2.1.0"
     exon            2657..2750
                     /gene="Zc3h18"
                     /gene_synonym="1190001B23Rik; 5830416A07Rik; Nhn1"
                     /inference="alignment:Splign:2.1.0"
     exon            2751..2847
                     /gene="Zc3h18"
                     /gene_synonym="1190001B23Rik; 5830416A07Rik; Nhn1"
                     /inference="alignment:Splign:2.1.0"
     exon            2848..3732
                     /gene="Zc3h18"
                     /gene_synonym="1190001B23Rik; 5830416A07Rik; Nhn1"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3712..3717
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zc3h18"
                     /gene_synonym="1190001B23Rik; 5830416A07Rik; Nhn1"
                     /note="hexamer: AATAAA"
     polyA_site      3732
                     /gene="Zc3h18"
                     /gene_synonym="1190001B23Rik; 5830416A07Rik; Nhn1"
                     /note="major polyA site"
ORIGIN      
        1 aagacggccg tcgcggcctg atgacgttgc acaatggccg gcccccgcgg gtagtggagc
       61 ccgtttgttc cgcccgcgtc gtgcccaaag ccggagccag tgaggagcga aaaggctgag
      121 gaacgtctcg tccacgctgc ccccaccaca gcggagccgt ggccgcctcc cgtcttcgcg
      181 ttgagatctg tgggtcctga tggatgtggc cgagagccct gaactggatc ctcactcccc
      241 agaggatgaa gagcagccgg cactctcaga tgatgacatt ctaagagaaa gtggatctga
      301 acaagatttg gatggagctg gggaaagggc gtctgatttg gaggaggagg aaaatgcaac
      361 cagggtacaa agccaggagg agactcgctc ggatgaggaa gaccgagcca gtgagcccaa
      421 gtcccaagat caggactcag aggctcatga gctgagcagg ggcccagcgg gatccccatg
      481 cgaggagggg gatgatgttg aggaagatgg gacaagtgac ctcagggacg aagcctcctc
      541 ggtgacccgg gaactggatg agcatgaact agactatgat gaggaggtcc ctgaggagcc
      601 agctcctgct gcccaggagg aggaggctga gaaggctggg gctgaggagg aggaggagaa
      661 gggggaaggg gctcccggag aggaagggaa gcctgatgtt caaagtgtgg gagaacaaga
      721 acccacagaa gctgccaagg agaagaagaa agaggatgac gacggggaga tcgatgatgg
      781 cgagatagac gatgatgact tggaggaagg cgaggtgaag gaccccagtg accggaaggt
      841 gaggcctcgc cccacctgcc gattcttcat gaaaggaaac tgcacgtggg gaatgagctg
      901 taggtttatc caccctggag tgaatgacaa aggcaactac tccctcatca ccaaagcgga
      961 accttttcca cccaacggtg ccccgcctct tggacctcac ccactgatgc ctgccaaccc
     1021 ttggggtggg ccagtggttg atgaaatttt gcctccaccc cctccagagc ccccaacaga
     1081 gagcgcctgg gaacgtggac tccgacatgc aaaagaggtt ttaaaaaaag caaccattcg
     1141 gaaagagcag gagcccgact ttgaagaaaa aaggttcaca gtaaccattg gtgaagacga
     1201 ccgggagttt gacaaggaga atgaagtctt ccgagattgg aattctcgag tcccgagaga
     1261 tgtcagagac acaacacttg agccttatgc agacccttat tatgactatg agatagaacg
     1321 gttttggcgt ggtggacagt acgagaattt cagggtgcag tatacagaag cagaaccgta
     1381 tcataactat cgcgaacgag agagggaacg agagcgagaa aacagacaac gagaacgcga
     1441 gcgggaacga gagcgtgacc gagagcggga gcgcaggcag agagagcggg agcgagaacg
     1501 ggaacgagag cgggacaagg agcggcagcg gaggaaagag gagtgggaga gagagagagc
     1561 caagcgagac gagaaggacc ggcaacaccg agaccgagac agggacaagg accgggagaa
     1621 ggacaaggag aagccgaagc ccaggtcccc acagccaccg agccgtcaag ctgaaccacc
     1681 aaagaaggag agcacctctg tggggcccca ggtgaagcga gccgatgagt ggaaggaccc
     1741 ctggcgccga tccaagtctc ccaagaagaa gcttggcgtg tccgtctccc caagccgggc
     1801 acgaagacgt cgcaaaacct ccgcctcctc agcctctgct tccaattcct ccaggtcatc
     1861 gtcacggtct tcatcctact ctggctctgg ctcgtcccgc tcccgctccc gctcctcctc
     1921 ctacagctcc tattctagcc gctcttccag acacagctcg ttctcaggca gccgatccag
     1981 gtcccggtcc ttctcctcgt ccccatcccc gtctcccaca ccttccccac acagacctcc
     2041 agtcagaacc aagggggagc cggccccacc tcctgggaaa gcaggggaga agtcaataaa
     2101 gaagccagcc cctcccccag ccccaccaca ggccaccaaa actactgctc ctggtcctga
     2161 gcctgccaaa cctggagatc tccgagaagc caggagaaag gagcggcaaa ccaggactcc
     2221 cccaaggagg cggacgctca gcggcagtgg tagcggcagt ggtagcagct acagtggctc
     2281 cagttcccga tccaggtctc tgagtgtgag cagcgtttcc tcagtgtcca gcgccacctc
     2341 gagtagcagc tcagtgcaca gtgtggactc agatgacatg tatgcagacc tggccagtcc
     2401 tgtgtcctca gccagctctc gatccccaac tcctgcccag accaagaagg agagagggaa
     2461 atccaagaaa gaagacggag tgagagagga aaagcggagg cgggacccat ccgcgcagcc
     2521 gcccaagtcc tctaaagctc cagcgggtgg gaaggcctcc cagcaggcag cggcgcctca
     2581 gccggcggtc cccgggcagc cccaacaggg ctcctttgtt gcccacaagg agataaagct
     2641 gacactgctg aacaaggcgg ctgataaagg aagccggaag cgctatgagc catcagacaa
     2701 ggaccggcag agccctcctg ccaagaaggc caacttgtcc ccagaccgag gttctcgaga
     2761 ccggaaatca ggtggaagaa tgggctcccc aaaaccagag aggcagagag gccagaacgc
     2821 taaagctcct gctgccccag cggacaggaa gcgtccactg tcaccccagt ctaagggctc
     2881 cagcaaggtc accagcgtgc ctggcaaagc cacagatact gccacagcag gcaccaagtc
     2941 agggaaggcc agcacattgt cacggcgaga ggagctcctt aaacagctca aagcggttga
     3001 ggacgccatc gctcgcaagc gggccaagat ccccgggaaa gtgtagtggc ccagctcact
     3061 cctggagtag actcttcatg tttttataaa gagtagggta agcgcagcca ttttggattt
     3121 tccagtcaat gtcttatttt ggctgtgatt ctttttaaaa attaaaaaag aaaaaaaaag
     3181 tttctcagct ggaaaagaag ccacacacaa gatgaagatg aggctgagtc ccaacctccc
     3241 caccagactg aaccagcttc ttccagaata gagtctccat ggacagacgg acagatcagc
     3301 actgaacagg ggacaccaac tctgtgtaac ttaagagctt caggcacgca ggggctggcc
     3361 tcacccttct gcctccgtcc tcacttctcc caggtgacct cctgggctgc agttttcagc
     3421 agcttcctct ggggacagga aagccgaaca cttctggact acaggcacca tccctccctc
     3481 cctggatcag aagtatatat atacttgcct aaagaagaat atatatatat attcttgcct
     3541 aaagtctgat tgggaaacat ttcctgtctt ttattttaag catcaaattg ttttagttga
     3601 ttaaaaagga aaaaaacaga aaagacaaaa aaataataat aataataaag gccaggggta
     3661 ttgttggggt gtctgtccaa tgtggagggt cttttttgag ctatctccta aaataaaata
     3721 ttttgataag caaaaaaaaa aa
//
