LOCUS       NM_026934               1963 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus zinc finger CCCH-type containing 15 (Zc3h15), mRNA.
ACCESSION   NM_026934
VERSION     NM_026934.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1963)
  AUTHORS   Guo,G., Huss,M., Tong,G.Q., Wang,C., Li Sun,L., Clarke,N.D. and
            Robson,P.
  TITLE     Resolution of cell fate decisions revealed by single-cell gene
            expression analysis from zygote to blastocyst
  JOURNAL   Dev Cell 18 (4), 675-685 (2010)
   PUBMED   20412781
REFERENCE   2  (bases 1 to 1963)
  AUTHORS   Gregory,R.C., Lord,K.A., Panek,L.B., Gaines,P., Dillon,S.B. and
            Wojchowski,D.M.
  TITLE     Subtraction cloning and initial characterization of novel
            epo-immediate response genes
  JOURNAL   Cytokine 12 (7), 845-857 (2000)
   PUBMED   10880228
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BX294652.6 and
            AL772301.7.
            
            On Nov 17, 2006 this sequence version replaced NM_026934.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC031845.1, AK159596.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849380, SAMN00849381
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-150               BX294652.6         37092-37241
            151-252             AL772301.7         6018-6119
            253-364             AL772301.7         9676-9787
            365-517             AL772301.7         10669-10821
            518-609             AL772301.7         11190-11281
            610-792             AL772301.7         12718-12900
            793-939             AL772301.7         13807-13953
            940-1041            AL772301.7         14093-14194
            1042-1165           AL772301.7         14809-14932
            1166-1963           AL772301.7         16480-17277
FEATURES             Location/Qualifiers
     source          1..1963
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 49.33 cM"
     gene            1..1963
                     /gene="Zc3h15"
                     /gene_synonym="1700006A17Rik; 1810012H02Rik;
                     2610312B22Rik; FM22; Ierepo4"
                     /note="zinc finger CCCH-type containing 15"
                     /db_xref="GeneID:69082"
                     /db_xref="MGI:MGI:1919747"
     exon            1..150
                     /gene="Zc3h15"
                     /gene_synonym="1700006A17Rik; 1810012H02Rik;
                     2610312B22Rik; FM22; Ierepo4"
                     /inference="alignment:Splign:2.1.0"
     CDS             76..1356
                     /gene="Zc3h15"
                     /gene_synonym="1700006A17Rik; 1810012H02Rik;
                     2610312B22Rik; FM22; Ierepo4"
                     /note="DRG family-regulatory protein 1; epo-immediate
                     response gene protein FM22"
                     /codon_start=1
                     /product="zinc finger CCCH domain-containing protein 15"
                     /protein_id="NP_081210.2"
                     /db_xref="CCDS:CCDS16180.1"
                     /db_xref="GeneID:69082"
                     /db_xref="MGI:MGI:1919747"
                     /translation="MPPKKQAQAGGSKKAEQKKKEKIIEDKTFGLKNKKGAKQQKFIK
                     AVTHQVKFGQQNPRQVAQSEAEKKLKKDDKKKELQELNELFKPVVAAQKISKGADPKS
                     VVCAFFKQGQCTKGDKCKFSHDLTLERKCEKRSVYIDARDEELEKDTMDNWDEKKLEE
                     VVNKKHGEAEKKKPKTQIVCRHFLEAIENNKYGWFWVCPGGGDNCMYRHALPPGFVLK
                     KDKKKEEKEDEISLEDLIERERSALGPNVTKITLESFLAWKKRKRQEKIDKLEQDMER
                     RKADFKAGKALVISGREVFEFRPELVNDDDEEADDTRYIQGTGGDEVDDSMGVNDIDI
                     SLYVPRDVEETGITVASVERFSTYAPDKDENKLSEASGGLAENGERSDLDEDSGGGGQ
                     ENGSIDAVPVDENLFTGEDLDELEEELNTLDLEE"
     exon            151..252
                     /gene="Zc3h15"
                     /gene_synonym="1700006A17Rik; 1810012H02Rik;
                     2610312B22Rik; FM22; Ierepo4"
                     /inference="alignment:Splign:2.1.0"
     exon            253..364
                     /gene="Zc3h15"
                     /gene_synonym="1700006A17Rik; 1810012H02Rik;
                     2610312B22Rik; FM22; Ierepo4"
                     /inference="alignment:Splign:2.1.0"
     exon            365..517
                     /gene="Zc3h15"
                     /gene_synonym="1700006A17Rik; 1810012H02Rik;
                     2610312B22Rik; FM22; Ierepo4"
                     /inference="alignment:Splign:2.1.0"
     exon            518..609
                     /gene="Zc3h15"
                     /gene_synonym="1700006A17Rik; 1810012H02Rik;
                     2610312B22Rik; FM22; Ierepo4"
                     /inference="alignment:Splign:2.1.0"
     exon            610..792
                     /gene="Zc3h15"
                     /gene_synonym="1700006A17Rik; 1810012H02Rik;
                     2610312B22Rik; FM22; Ierepo4"
                     /inference="alignment:Splign:2.1.0"
     exon            793..939
                     /gene="Zc3h15"
                     /gene_synonym="1700006A17Rik; 1810012H02Rik;
                     2610312B22Rik; FM22; Ierepo4"
                     /inference="alignment:Splign:2.1.0"
     exon            940..1041
                     /gene="Zc3h15"
                     /gene_synonym="1700006A17Rik; 1810012H02Rik;
                     2610312B22Rik; FM22; Ierepo4"
                     /inference="alignment:Splign:2.1.0"
     exon            1042..1165
                     /gene="Zc3h15"
                     /gene_synonym="1700006A17Rik; 1810012H02Rik;
                     2610312B22Rik; FM22; Ierepo4"
                     /inference="alignment:Splign:2.1.0"
     exon            1166..1963
                     /gene="Zc3h15"
                     /gene_synonym="1700006A17Rik; 1810012H02Rik;
                     2610312B22Rik; FM22; Ierepo4"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1940..1945
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zc3h15"
                     /gene_synonym="1700006A17Rik; 1810012H02Rik;
                     2610312B22Rik; FM22; Ierepo4"
                     /note="hexamer: AATAAA"
     polyA_site      1963
                     /gene="Zc3h15"
                     /gene_synonym="1700006A17Rik; 1810012H02Rik;
                     2610312B22Rik; FM22; Ierepo4"
                     /note="major polyA site"
ORIGIN      
        1 gctcccgccg agctgccgga cgccccgacg gtagccatct gcgtcgcagt cggcccggtg
       61 ccccccgcct ccgcgatgcc ccccaagaaa caggctcagg ccgggggcag caagaaggcg
      121 gagcagaaga agaaggagaa gatcatcgag gacaaaactt ttggactgaa gaataagaaa
      181 ggagcaaagc aacagaaatt tattaaggct gtcactcatc aagtgaaatt tggtcaacag
      241 aatccacgtc aggtagcgca aagtgaagct gaaaagaaat tgaagaaaga tgacaagaag
      301 aaagaactac aagagctaaa tgagttgttc aaacctgtag ttgctgcaca aaaaataagc
      361 aaaggtgcag atcccaaatc tgtggtgtgc gcattcttca aacagggaca gtgtactaaa
      421 ggagataaat gtaagttctc tcatgacctc actttggaga gaaaatgtga aaaacgaagt
      481 gtttacattg atgcaagaga tgaagaactt gaaaaagata ctatggataa ttgggatgag
      541 aaaaagctgg aagaagtagt aaacaagaag cacggtgagg cggaaaagaa aaaaccaaaa
      601 actcaaatag tgtgcagaca ttttcttgaa gctattgaaa ataacaagta tggctggttt
      661 tgggtgtgtc ctggaggtgg ggacaactgc atgtatcgcc atgcacttcc tcctggattt
      721 gtgctaaaga aagacaaaaa gaaagaagag aaggaagatg aaatctcatt agaagatcta
      781 attgaaagag agcgttctgc cctaggtcca aatgttacca aaatcactct agagtctttt
      841 ctcgcgtgga agaagaggaa aagacaagaa aagattgata aacttgaaca agatatggag
      901 aggcggaaag ctgacttcaa agcagggaaa gcactggtga tcagtggtcg tgaggtattt
      961 gaatttcgtc ccgagctggt caatgatgat gacgaggaag cagacgatac ccgttacatt
     1021 cagggaacag gtggtgatga ggttgatgat tctatgggtg taaatgacat agatataagc
     1081 ctgtacgtcc caagagatgt agaagagaca ggtatcactg tggccagtgt tgaaagattc
     1141 agcacctatg cgccagacaa agacgagaac aaattaagtg aagcttctgg gggtctggct
     1201 gaaaatggtg aaagaagtga tttggacgag gacagcggag ggggaggaca ggaaaatgga
     1261 tccatcgatg ctgttcctgt tgatgaaaac ctgttcactg gcgaagatct ggatgaacta
     1321 gaagaggaat tgaacactct tgacttagaa gaatgatgag gatgaaaact aggtcagctc
     1381 actaggatca acatgaactg agattgactc attaattgtt tggccaccta gaatcagcag
     1441 gatgtttctt tccccatgat gaccctggag ggattctgtc ctccacaaaa ggagtactag
     1501 ccctgcgtcc tctcttctga ccttgactac atctcatagt aagttcagag tagttggtga
     1561 taaattaaaa atggtcatta cagaagatga ttgtcgttgt aactgtccac tcatgtagga
     1621 agtgtaaccg ctttcccagc ttttggtttt cattgggcat gtgtaatttc cagaaacaac
     1681 agattcacac ttaagacact tgcgtttgat gcagttttta atgagtggtg tcctttcctt
     1741 tgtatttata tgttttagag actgcctgaa aggtgagcac tgtacttgat aaaggaaact
     1801 gcatatgcag attcagtatt gtacttctgt ggacaattag gtggacactg agaatgggac
     1861 ttgtcaacct gacagggtca gctacagtgc cgtgttaaag ctgtttgaag ttctcccctt
     1921 ttttgccaat aaagttgtaa ataaaaacca tcatacatcc aaa
//
