LOCUS       NM_001276767            4468 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus zinc finger CCCH type containing 11A (Zc3h11a),
            transcript variant 1, mRNA.
ACCESSION   NM_001276767
VERSION     NM_001276767.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4468)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 4468)
  AUTHORS   Bhattacharjee,R., Jolly,L.A., Corbett,M.A., Wee,I.C., Rao,S.R.,
            Gardner,A.E., Ritchie,T., van Hugte,E.J.H., Ciptasari,U., Piltz,S.,
            Noll,J.E., Nazri,N., van Eyk,C.L., White,M., Fornarino,D.,
            Poulton,C., Baynam,G., Collins-Praino,L.E., Snel,M.F., Nadif
            Kasri,N., Hemsley,K.M., Thomas,P.Q., Kumar,R. and Gecz,J.
  TITLE     Compromised transcription-mRNA export factor THOC2 causes R-loop
            accumulation, DNA damage and adverse neurodevelopment
  JOURNAL   Nat Commun 15 (1), 1210 (2024)
   PUBMED   38331934
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 4468)
  AUTHORS   Kases,K., Schubert,E., Hajikhezri,Z., Larsson,M., Devi,P.,
            Darweesh,M., Andersson,L., Akusjarvi,G., Punga,T. and Younis,S.
  TITLE     The RNA-binding protein ZC3H11A interacts with the nuclear
            poly(A)-binding protein PABPN1 and alters polyadenylation of viral
            transcripts
  JOURNAL   J Biol Chem 299 (8), 104959 (2023)
   PUBMED   37356722
  REMARK    GeneRIF: The RNA-binding protein ZC3H11A interacts with the nuclear
            poly(A)-binding protein PABPN1 and alters polyadenylation of viral
            transcripts.
REFERENCE   4  (bases 1 to 4468)
  AUTHORS   Younis,S., Jouneau,A., Larsson,M., Oudin,J.F., Adenot,P., Omar,J.,
            Brochard,V. and Andersson,L.
  TITLE     Ablation of ZC3H11A causes early embryonic lethality and
            dysregulation of metabolic processes
  JOURNAL   Proc Natl Acad Sci U S A 120 (23), e2216799120 (2023)
   PUBMED   37252988
  REMARK    GeneRIF: Ablation of ZC3H11A causes early embryonic lethality and
            dysregulation of metabolic processes.
REFERENCE   5  (bases 1 to 4468)
  AUTHORS   Shu,H., Chen,S., Bi,Q., Mumby,M. and Brekken,D.L.
  TITLE     Identification of phosphoproteins and their phosphorylation sites
            in the WEHI-231 B lymphoma cell line
  JOURNAL   Mol Cell Proteomics 3 (3), 279-286 (2004)
   PUBMED   14729942
REFERENCE   6  (bases 1 to 4468)
  AUTHORS   Okazaki,N., Kikuno,R., Ohara,R., Inamoto,S., Aizawa,H., Yuasa,S.,
            Nakajima,D., Nagase,T., Ohara,O. and Koga,H.
  TITLE     Prediction of the coding sequences of mouse homologues of KIAA
            gene: II. The complete nucleotide sequences of 400 mouse
            KIAA-homologous cDNAs identified by screening of terminal sequences
            of cDNA clones randomly sampled from size-fractionated libraries
  JOURNAL   DNA Res 10 (1), 35-48 (2003)
   PUBMED   12693553
REFERENCE   7  (bases 1 to 4468)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   8  (bases 1 to 4468)
  AUTHORS   Piao,Y., Ko,N.T., Lim,M.K. and Ko,M.S.
  TITLE     Construction of long-transcript enriched cDNA libraries from
            submicrogram amounts of total RNAs by a universal PCR amplification
            method
  JOURNAL   Genome Res 11 (9), 1553-1558 (2001)
   PUBMED   11544199
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC124338.11.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FR682665.1, BC066163.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-163               AC124338.11        57643-57805
            164-217             AC124338.11        63644-63697
            218-277             AC124338.11        65010-65069
            278-471             AC124338.11        71513-71706
            472-591             AC124338.11        73196-73315
            592-715             AC124338.11        78307-78430
            716-919             AC124338.11        79799-80002
            920-1036            AC124338.11        80093-80209
            1037-1117           AC124338.11        80429-80509
            1118-1228           AC124338.11        81583-81693
            1229-1288           AC124338.11        82986-83045
            1289-1387           AC124338.11        85182-85280
            1388-1891           AC124338.11        91772-92275
            1892-1974           AC124338.11        93112-93194
            1975-2302           AC124338.11        94232-94559
            2303-2469           AC124338.11        95892-96058
            2470-2537           AC124338.11        96858-96925
            2538-4468           AC124338.11        97241-99171
FEATURES             Location/Qualifiers
     source          1..4468
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="1"
                     /map="1 57.94 cM"
     gene            1..4468
                     /gene="Zc3h11a"
                     /gene_synonym="1110003F06Rik; 5730454B08Rik;
                     G630041M05Rik; mKIAA0663; Zc3hdc11a; Zc3hh11a"
                     /note="zinc finger CCCH type containing 11A"
                     /db_xref="GeneID:70579"
                     /db_xref="MGI:MGI:1917829"
     exon            1..163
                     /gene="Zc3h11a"
                     /gene_synonym="1110003F06Rik; 5730454B08Rik;
                     G630041M05Rik; mKIAA0663; Zc3hdc11a; Zc3hh11a"
                     /inference="alignment:Splign:2.1.0"
     exon            164..217
                     /gene="Zc3h11a"
                     /gene_synonym="1110003F06Rik; 5730454B08Rik;
                     G630041M05Rik; mKIAA0663; Zc3hdc11a; Zc3hh11a"
                     /inference="alignment:Splign:2.1.0"
     exon            218..277
                     /gene="Zc3h11a"
                     /gene_synonym="1110003F06Rik; 5730454B08Rik;
                     G630041M05Rik; mKIAA0663; Zc3hdc11a; Zc3hh11a"
                     /inference="alignment:Splign:2.1.0"
     exon            278..471
                     /gene="Zc3h11a"
                     /gene_synonym="1110003F06Rik; 5730454B08Rik;
                     G630041M05Rik; mKIAA0663; Zc3hdc11a; Zc3hh11a"
                     /inference="alignment:Splign:2.1.0"
     CDS             418..2796
                     /gene="Zc3h11a"
                     /gene_synonym="1110003F06Rik; 5730454B08Rik;
                     G630041M05Rik; mKIAA0663; Zc3hdc11a; Zc3hh11a"
                     /codon_start=1
                     /product="zinc finger CCCH domain-containing protein 11A"
                     /protein_id="NP_001263696.1"
                     /db_xref="CCDS:CCDS15297.1"
                     /db_xref="GeneID:70579"
                     /db_xref="MGI:MGI:1917829"
                     /translation="MPNQGEDCYFYFYSTCAKGDSCPFRHCEAALGNETVCTLWQEGR
                     CFRQVCRFRHMEIDKKRSEIPCYWENQPVGCQKLNCAFHHTRSRYVDGLFLPPSKTVL
                     PTVPESQEEEVKTSQLTVQQSKLSVQSNPSPQLRSVMKVESSENVPSPTHPPVVINAA
                     DDDEDDDDQFSEEGDESKTPALQPSPDVHNGLRVASARKPGVSLKQGECLNFGIKTLE
                     EIKSKKMKEKSKKQGEGSSGVSSVLQQPQPNPGPEKENVRTVVRMVTLSSKPEEPLVR
                     LSLSERLGKRKLSVGGDSDPPLKRSLAQRLGKKVESPETNIDKAPKKERGHKAGEIHV
                     KTLEEILLERASQKRGELQTKLKAEEPSGADDSPSGTKSSSSVRIKTFSEVLAEKKHR
                     QQEMERQKSKKDTSCLTLTDDTEMKKTVSLPTVAVSKGQPEEPAGRARSMQEVHIKTL
                     EEIKLEKALRVQQSSESSGNSRPQAEAAPGTKRLLRITKRAGVKEEKKCGLEDSGDPP
                     QSSVTKMEANETSDETISDPTKLAVNRCDTVKEKHTQRLQERGASQKEKAALSSVRGD
                     EASSYTRVAGKPVLTAVSGVTRHLAKRLPVESSQKGEVETSGIGDSILNVKCAAQTLE
                     KRSKVKPKVNVKPSVVKVVSAPKLAPKRKAVEMHSAVIAAVKPLSSSSVLQESPTKKA
                     AVAVVPLLSEDKPVTMSETENPKDSSVLSSAQAASEPLLPEGSGPSSSQTATKPRRLS
                     SASTGKPPLSVEDDFEKLIWEISGGKLEAEIDLDPGKDEDDLLLELSEMIDS"
     exon            472..591
                     /gene="Zc3h11a"
                     /gene_synonym="1110003F06Rik; 5730454B08Rik;
                     G630041M05Rik; mKIAA0663; Zc3hdc11a; Zc3hh11a"
                     /inference="alignment:Splign:2.1.0"
     exon            592..715
                     /gene="Zc3h11a"
                     /gene_synonym="1110003F06Rik; 5730454B08Rik;
                     G630041M05Rik; mKIAA0663; Zc3hdc11a; Zc3hh11a"
                     /inference="alignment:Splign:2.1.0"
     exon            716..919
                     /gene="Zc3h11a"
                     /gene_synonym="1110003F06Rik; 5730454B08Rik;
                     G630041M05Rik; mKIAA0663; Zc3hdc11a; Zc3hh11a"
                     /inference="alignment:Splign:2.1.0"
     exon            920..1036
                     /gene="Zc3h11a"
                     /gene_synonym="1110003F06Rik; 5730454B08Rik;
                     G630041M05Rik; mKIAA0663; Zc3hdc11a; Zc3hh11a"
                     /inference="alignment:Splign:2.1.0"
     exon            1037..1117
                     /gene="Zc3h11a"
                     /gene_synonym="1110003F06Rik; 5730454B08Rik;
                     G630041M05Rik; mKIAA0663; Zc3hdc11a; Zc3hh11a"
                     /inference="alignment:Splign:2.1.0"
     exon            1118..1228
                     /gene="Zc3h11a"
                     /gene_synonym="1110003F06Rik; 5730454B08Rik;
                     G630041M05Rik; mKIAA0663; Zc3hdc11a; Zc3hh11a"
                     /inference="alignment:Splign:2.1.0"
     exon            1229..1288
                     /gene="Zc3h11a"
                     /gene_synonym="1110003F06Rik; 5730454B08Rik;
                     G630041M05Rik; mKIAA0663; Zc3hdc11a; Zc3hh11a"
                     /inference="alignment:Splign:2.1.0"
     exon            1289..1387
                     /gene="Zc3h11a"
                     /gene_synonym="1110003F06Rik; 5730454B08Rik;
                     G630041M05Rik; mKIAA0663; Zc3hdc11a; Zc3hh11a"
                     /inference="alignment:Splign:2.1.0"
     exon            1388..1891
                     /gene="Zc3h11a"
                     /gene_synonym="1110003F06Rik; 5730454B08Rik;
                     G630041M05Rik; mKIAA0663; Zc3hdc11a; Zc3hh11a"
                     /inference="alignment:Splign:2.1.0"
     exon            1892..1974
                     /gene="Zc3h11a"
                     /gene_synonym="1110003F06Rik; 5730454B08Rik;
                     G630041M05Rik; mKIAA0663; Zc3hdc11a; Zc3hh11a"
                     /inference="alignment:Splign:2.1.0"
     exon            1975..2302
                     /gene="Zc3h11a"
                     /gene_synonym="1110003F06Rik; 5730454B08Rik;
                     G630041M05Rik; mKIAA0663; Zc3hdc11a; Zc3hh11a"
                     /inference="alignment:Splign:2.1.0"
     exon            2303..2469
                     /gene="Zc3h11a"
                     /gene_synonym="1110003F06Rik; 5730454B08Rik;
                     G630041M05Rik; mKIAA0663; Zc3hdc11a; Zc3hh11a"
                     /inference="alignment:Splign:2.1.0"
     exon            2470..2537
                     /gene="Zc3h11a"
                     /gene_synonym="1110003F06Rik; 5730454B08Rik;
                     G630041M05Rik; mKIAA0663; Zc3hdc11a; Zc3hh11a"
                     /inference="alignment:Splign:2.1.0"
     exon            2538..4468
                     /gene="Zc3h11a"
                     /gene_synonym="1110003F06Rik; 5730454B08Rik;
                     G630041M05Rik; mKIAA0663; Zc3hdc11a; Zc3hh11a"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gagcctgtag ccgggcgcca tctttgacgc tggcagtcct gggtttctgc ttgttcggct
       61 gctgtgagga cggcgggcga ccgcagctaa gaaaagagaa agacgtggca gcacgcggga
      121 gtcggagaca ttgtcatcgg ttcggtaaag tttctgttct ctgatttggg gatattccct
      181 gcccaaaaaa ttcctggaaa attgactagt attaagtgcg taatagcttg gaactgagtg
      241 aagacacaga tgttcctgtt gagagcaacc agctaatggt tacattttaa agacgatttc
      301 tgtggctgag tggtcattgg aagagtaagt ccttttcaag agtcctcgga gctggtctca
      361 cctcggaagc agtggcttgt tccaggaagc cggttttggc ctgagaattt acccagtatg
      421 cctaatcagg gagaagactg ctatttttat ttctattcta catgcgccaa aggtgacagc
      481 tgcccattcc gtcactgtga agctgcacta ggaaatgaaa ctgtttgcac actatggcaa
      541 gaaggtcgtt gttttcgaca ggtgtgcaga tttcgtcaca tggaaattga caaaaaacga
      601 agtgaaattc cttgttattg ggaaaatcag ccagtgggat gtcaaaaact aaactgcgct
      661 ttccatcaca ccagaagccg ctatgttgat ggactcttcc tacctccaag caaaactgtg
      721 ttacccactg tgcctgagtc acaagaagaa gaagtaaaga ctagccagct cacagttcaa
      781 cagagcaaat tgtctgttca gtctaacccc tcccctcagc tgcggagtgt aatgaaagta
      841 gagagctcag aaaacgttcc cagccccaca catccgcctg ttgtaatcaa cgctgcagat
      901 gatgatgaag atgacgatga tcagttttct gaggagggtg atgaaagcaa gacacctgcc
      961 ctgcagccat ctcctgacgt ccataatgga ttacgagtgg cttctgcccg caaacctgga
     1021 gtcagtttaa agcaaggtga atgtttgaat tttggaataa agactcttga ggaaattaaa
     1081 tcaaagaaaa tgaaggaaaa atccaagaag caaggtgaag gctcctcggg agtttccagt
     1141 gttttacagc agcctcagcc caatccaggc cctgagaagg agaatgttcg gactgtggtg
     1201 aggatggtga ctctatccag caaaccagaa gagcccttgg ttagactgag tctttctgag
     1261 agactgggga aacgaaaact ttcagtgggt ggtgatagtg accctccatt aaagcgaagc
     1321 cttgcacaga ggctgggaaa aaaagtggaa tcgccagaaa ctaacattga taaagcacca
     1381 aagaaagagc gaggtcataa agctggggag atccatgtga agacactgga agaaattctt
     1441 cttgaaagag ccagtcagaa acgtggagaa ttgcaaacca aactgaaggc agaagaacct
     1501 tcaggagccg atgattctcc atcagggaca aaaagttctt cttcagtgcg gatcaaaacc
     1561 ttctctgagg tcctggctga aaagaaacac cggcagcagg aaatggaaag acagaaatcc
     1621 aaaaaggata caagttgcct cacgctaaca gacgacactg aaatgaaaaa gacagtgagt
     1681 ctgcccactg ttgctgttag caaaggacaa ccagaggagc ctgcaggaag agccaggtct
     1741 atgcaggagg tgcatattaa gacactagag gaaattaagc tggagaaggc cctgagggtg
     1801 cagcaaagct ctgagagtag tggcaactcc cgacctcaag ctgaggctgc cccagggaca
     1861 aagaggctgc tccgcatcac caagagagca ggtgtaaaag aagagaaaaa atgtggcctt
     1921 gaagacagtg gtgaccctcc tcagagcagt gtgactaaga tggaggctaa tgagacttca
     1981 gatgagacca taagtgatcc cacaaaactt gcagtcaaca gatgtgacac tgtcaaagag
     2041 aaacacacac agagactgca ggagagagga gcatcacaaa aggagaaagc agccttgtca
     2101 tctgtgcgag gagatgaggc ttcttcttat acccgagtgg cggggaagcc ggtgctcact
     2161 gctgtatcag gcgtcactcg gcatctggca aaacggctcc ccgtggagtc atcccagaaa
     2221 ggggaggtag aaacctccgg aatcggggac tcaatactga atgtgaaatg cgcagcacag
     2281 actttggaga agaggagtaa agtcaaaccc aaagtaaatg tgaagccatc tgtggtcaag
     2341 gttgtctcag ctcccaaatt ggctcccaaa cgcaaggctg tggagatgca ctctgccgtc
     2401 atcgcagccg tgaagccgct cagctccagc agtgtcctgc aggaaagccc caccaagaaa
     2461 gcagctgtgg ctgttgtccc actcctctct gaggataaac ccgtcaccat gtctgagaca
     2521 gaaaacccaa aagacagttc tgtgctgtct tcagcccaag ctgcttcgga acccttgctc
     2581 ccggaaggct ctggcccttc ctcatcccag acggcaacaa aaccgcgccg gctgagctcc
     2641 gcctccacgg gaaagcctcc actctctgtg gaagatgatt ttgagaaact aatatgggaa
     2701 atttcagggg gcaaattgga agctgagatc gacttggatc ctgggaagga tgaagatgac
     2761 cttctgcttg agctctcaga gatgattgac agctgaaacc caaggggata atgaggacac
     2821 ttaaaaaaaa aaaaaaaaaa aaaaccctca ccaaaaactg gacttagttt catctattta
     2881 cctgaggtga taatttcttt taagtctcaa attttgccca aatcaaaagt atacctctga
     2941 agtacctgtg tgtcctggac tccctggggt cggatctttt acatcccttg ataaataact
     3001 gttttgtcca cttgctgcca ttgttgagca tctttgagaa gaaagttctg taatgccctt
     3061 ctctccacct gagactgagc tccaaatgaa acggtgcacg agaactcagt ggtcctcgag
     3121 gtgtttgtta gtgtgggcta gcttccctgc tctatttatt tatgtattgt cttaatttta
     3181 tcagagttta aaaatgaaga cagctgctaa ccattgtgga ccaaatgtca tgctaccact
     3241 aaacaaaaga cccactcagt ctgtgttaaa ttgtatgtct tgtatttgga aattcgtcta
     3301 agctttaaag agggccgggc agctcgagaa cctgagatac ggacctaact ctggacctgg
     3361 tcctgttgtg ttagctgttc cgtgagcctc tgaagagcaa tagctaattt attattactg
     3421 taatttttta aaggctttaa agtgcctcag gggtcccctg aaactaattt tctatttctg
     3481 ggattccctg gattctttat aagagatggt gacatgacta gggaaattct ttttttagta
     3541 tgaaaattgt cccttcaata cctttctctt actggcattg aattatcaca gagacagaaa
     3601 attggtaaat ttttttaatt tctaactctc ccaggaaact ccttgcctag tatttatttg
     3661 atatgcttta accatggggg ggtggacctc aagctgccag tattgatcta cagactgtag
     3721 cagtacactg ggctgtactg tcagggatgg caagatgctc tggggtgtat tggatacctc
     3781 cagtttcttc acttctggat tgagttttct tttcttaatg ttggtcctct tcacatcacc
     3841 tcaaggttta gacttgtgaa ggaacaagtc tgatgaggat aatagtcttg aaaggagaca
     3901 ctgtacagaa ttggaagaag gaaagaaaag acttgttcat tgtgatactt tctgtaggtg
     3961 gccagtttgt ttctcatagg gaaatcctgg accacctgtc atgttggctc ctaaggaact
     4021 gctgttgtaa gcggctcatc aagagttgaa gttcatgtag ccttgttggg aatatggaaa
     4081 aggaagaaag ccacaggact gccagttcag tctgggaaga tctggatgat tctgcacatg
     4141 caaaaatgac ttgaagtttc tgtatagacg cttgtaccga tccatcttca gctgactgaa
     4201 tgttgtatga tagcccttct ccaaagcaga ggtggaaggt tctggtttca ccacacattt
     4261 tataaacaca tctcctgttt tgaattggcc tataggttgt aggcctcttt tgtatataac
     4321 ctctattatt ttgctttaaa aaaaaaaaaa ggtctgttca tatttaatgc cctgtattag
     4381 tcaatgattt gtgttcaaca ttatttgaac catttgccat taacgaaaga gaaatactta
     4441 tttgtgtttt aaataaaact gatatagg
//
