LOCUS       NM_029162               2785 bp    mRNA    linear   ROD 12-JUN-2024
DEFINITION  Mus musculus zinc finger and BTB domain containing 49 (Zbtb49),
            transcript variant 1, mRNA.
ACCESSION   NM_029162 XM_132091
VERSION     NM_029162.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2785)
  AUTHORS   Medeiros de Araujo,J.A., Barao,S., Mateos-White,I., Espinosa,A.,
            Costa,M.R., Gil-Sanz,C. and Muller,U.
  TITLE     ZBTB20 is crucial for the specification of a subset of callosal
            projection neurons and astrocytes in the mammalian neocortex
  JOURNAL   Development 148 (16) (2021)
   PUBMED   34351428
REFERENCE   2  (bases 1 to 2785)
  AUTHORS   Alvarez-Dominguez,J.R., Zhang,X. and Hu,W.
  TITLE     Widespread and dynamic translational control of red blood cell
            development
  JOURNAL   Blood 129 (5), 619-629 (2017)
   PUBMED   27899360
REFERENCE   3  (bases 1 to 2785)
  AUTHORS   Alvarez-Dominguez,J.R., Hu,W., Yuan,B., Shi,J., Park,S.S.,
            Gromatzky,A.A., van Oudenaarden,A. and Lodish,H.F.
  TITLE     Global discovery of erythroid long noncoding RNAs reveals novel
            regulators of red cell maturation
  JOURNAL   Blood 123 (4), 570-581 (2014)
   PUBMED   24200680
REFERENCE   4  (bases 1 to 2785)
  AUTHORS   Wiese,C.B., Ireland,S., Fleming,N.L., Yu,J., Valerius,M.T.,
            Georgas,K., Chiu,H.S., Brennan,J., Armstrong,J., Little,M.H.,
            McMahon,A.P. and Southard-Smith,E.M.
  TITLE     A genome-wide screen to identify transcription factors expressed in
            pelvic Ganglia of the lower urinary tract
  JOURNAL   Front Neurosci 6, 130 (2012)
   PUBMED   22988430
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC115931.7.
            
            On Feb 10, 2022 this sequence version replaced NM_029162.3.
            
            Transcript Variant: This variant (1) represents the longest
            transcript and encodes the longer isoform (1).
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK140546.1, AK043044.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-111               AC115931.7         117683-117793       c
            112-278             AC115931.7         113807-113973       c
            279-1354            AC115931.7         110668-111743       c
            1355-1401           AC115931.7         107978-108024       c
            1402-1475           AC115931.7         103249-103322       c
            1476-1558           AC115931.7         101105-101187       c
            1559-1720           AC115931.7         100856-101017       c
            1721-2785           AC115931.7         97609-98673         c
FEATURES             Location/Qualifiers
     source          1..2785
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 20.25 cM"
     gene            1..2785
                     /gene="Zbtb49"
                     /gene_synonym="4930518A03Rik; Zfp509; Znf509"
                     /note="zinc finger and BTB domain containing 49"
                     /db_xref="GeneID:75079"
                     /db_xref="MGI:MGI:1922329"
     exon            1..111
                     /gene="Zbtb49"
                     /gene_synonym="4930518A03Rik; Zfp509; Znf509"
                     /inference="alignment:Splign:2.1.0"
     exon            112..278
                     /gene="Zbtb49"
                     /gene_synonym="4930518A03Rik; Zfp509; Znf509"
                     /inference="alignment:Splign:2.1.0"
     CDS             127..2397
                     /gene="Zbtb49"
                     /gene_synonym="4930518A03Rik; Zfp509; Znf509"
                     /note="isoform 1 is encoded by transcript variant 1; zinc
                     finger protein 509; zinc finger and BTB domain-containing
                     protein 49"
                     /codon_start=1
                     /product="zinc finger and BTB domain-containing protein 49
                     isoform 1"
                     /protein_id="NP_083438.1"
                     /db_xref="CCDS:CCDS19252.1"
                     /db_xref="GeneID:75079"
                     /db_xref="MGI:MGI:1922329"
                     /translation="MDPVAVHSCHLLQQLREQRIQGLLCDCMLVVRGVCFKAHKNVLA
                     AFSQYFRSLFQNSSSQKNDVFHLDVTNVSGIGQILDFMYTSRLDLNQDNIQVMLDTAQ
                     CLQVQNVLNLCHTFLKSAPAAQLPGLPCAGGFSLQSVALDGTCAVSEHYPPPSLQECP
                     VEGPQAKVPAEVNARAPSANFSRPTEVSKPDAAGGSCPELPCKQPNHYYKLRTLYSKQ
                     YYKQTACPSQVPATQQPLTRSASTDLAAADSQPPVEGRPAVLETPEHLPSTFVAPPVR
                     NSGNDSEADPLSEPPAKQMRLKKAMHLKKLNFLKSQQSAECTSHPEPDNGLARREESA
                     AKEDAVERAGSQTAEEKGRGELGPESSREEELPGAPASWEDPSQALQPQKQYACELCG
                     KPFKHPSNLELHKRSHTGEKPFECNICGKHFSQAGNLQTHLRRHSGEKPYICEICGKR
                     FAASGDVQRHIIIHSGEKPHLCDTCGRGFSNFSNLKEHKKTHTADKVFTCDECGKSFN
                     MQRKLVKHRVRHTGERPYSCPACGKCFGGSGDLRRHVRTHTGEKPYSCEVCSKCFTRS
                     AVLRRHKRMHGRADARSPVVLGELSRPIEPSDLDRSQSSDSFSQDVSVTLMPVSVKLP
                     VQPVESSVAGFDGHCSGSYCKLRSMLRPPGMSDQDRLSLEPSKLAKPPELQSQPQAYA
                     YSDVEPSAGVEQPQADGMAVSRSSLATLDNHCTEPLGSRAPSVTYRNSEGQFFSSMTL
                     WGLAMKTLQNEHELEQ"
     exon            279..1354
                     /gene="Zbtb49"
                     /gene_synonym="4930518A03Rik; Zfp509; Znf509"
                     /inference="alignment:Splign:2.1.0"
     exon            1355..1401
                     /gene="Zbtb49"
                     /gene_synonym="4930518A03Rik; Zfp509; Znf509"
                     /inference="alignment:Splign:2.1.0"
     exon            1402..1475
                     /gene="Zbtb49"
                     /gene_synonym="4930518A03Rik; Zfp509; Znf509"
                     /inference="alignment:Splign:2.1.0"
     exon            1476..1558
                     /gene="Zbtb49"
                     /gene_synonym="4930518A03Rik; Zfp509; Znf509"
                     /inference="alignment:Splign:2.1.0"
     exon            1559..1720
                     /gene="Zbtb49"
                     /gene_synonym="4930518A03Rik; Zfp509; Znf509"
                     /inference="alignment:Splign:2.1.0"
     exon            1721..2785
                     /gene="Zbtb49"
                     /gene_synonym="4930518A03Rik; Zfp509; Znf509"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2762..2767
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zbtb49"
                     /gene_synonym="4930518A03Rik; Zfp509; Znf509"
                     /note="hexamer: AATAAA"
     polyA_site      2785
                     /gene="Zbtb49"
                     /gene_synonym="4930518A03Rik; Zfp509; Znf509"
                     /note="major polyA site"
ORIGIN      
        1 gagggggcgt tgtcggaatg gttccgaggc ggttggagtc ctgcagttga caccgagagt
       61 gcgacgagaa agggtgtcag ggaggcggcc gggcgagagc ggcctccgcg ggtctcatgg
      121 tctagtatgg accctgttgc tgttcacagc tgccacctcc tgcagcagct gcgagagcag
      181 cggatccagg gcctgctttg tgactgcatg ctggtggtga ggggcgtctg cttcaaagca
      241 cacaagaatg tcctggcagc cttcagccag tatttcagga gcctctttca gaactcttcc
      301 agccagaaga acgacgtttt ccacctggac gttacaaatg tcagtggcat agggcagatc
      361 ctggacttca tgtacacatc gcgcctcgac ctcaaccagg acaacattca ggtgatgctg
      421 gacacagcgc agtgtctgca agtgcagaat gttctgaatc tgtgccacac atttctgaag
      481 tcggcccctg cagcacagct gccaggcttg ccttgtgctg gtggcttctc cctgcagagt
      541 gtggctctgg atggcacctg cgccgttagt gagcactacc ctcctccctc actgcaggag
      601 tgccctgtgg aaggcccgca ggctaaagtc ccggctgaag tgaacgctcg tgctccatcg
      661 gcaaatttca gtcgtcccac ggaagtgtca aaaccagatg ctgcaggcgg cagctgccca
      721 gagctgccct gcaagcagcc caaccactat tacaaactca gaacattgta cagcaagcag
      781 tattacaagc aaactgcctg ccccagccag gtgcctgcca cacaacagcc gctcactcgc
      841 agtgcctcca cagacctcgc tgcagcagac tcgcagcctc ctgtggaggg ccgtccagct
      901 gtcctggaga ctccagagca cttgccttcc acctttgtgg ctccacctgt caggaactct
      961 ggcaatgact ctgaggcaga ccccctttct gagccccctg ccaagcagat gagactgaag
     1021 aaggccatgc acctgaagaa actaaacttt ctaaagtcac agcagtcggc agagtgcact
     1081 tcacaccctg agccagataa tgggttggcc aggagggagg agtctgctgc taaggaagat
     1141 gcagtggaga gagctggaag ccagactgct gaagaaaaag ggaggggaga actgggtcca
     1201 gagagcagcc gtgaggagga gctgccagga gccccagctt cctgggaaga cccgtcccag
     1261 gctctccagc cccagaaaca gtatgcatgt gaattgtgtg ggaagccttt taaacaccca
     1321 agcaatctgg agctgcacaa acggtctcat acaggtgaga aaccttttga atgtaacatt
     1381 tgtgggaaac acttctctca ggcaggcaac cttcagactc acttacgccg gcactctggg
     1441 gagaagccat acatctgtga aatctgtgga aagaggtttg cggcctctgg tgacgtccag
     1501 cgccacatca tcattcactc tggagagaag ccacacttgt gtgacacgtg cggccgaggg
     1561 ttcagcaatt tcagcaattt gaaagagcac aaaaagacac acacggctga caaggtgttt
     1621 acctgtgacg agtgtgggaa gtcctttaac atgcagagga agctggtgaa gcaccgcgtg
     1681 cggcacacgg gggagcggcc atacagctgc cctgcctgtg ggaagtgctt tgggggctca
     1741 ggagacctgc gcaggcacgt gcgcactcac actggggaga agccctatag ctgtgaggtc
     1801 tgcagcaagt gtttcacacg ctcggctgtg ttgcggcggc acaagaggat gcacggcaga
     1861 gctgatgcca ggagccccgt tgtgctgggt gagctgagcc ggcccattga gccctctgac
     1921 ctggacaggt ctcagagctc ggactccttc tcccaggatg tgtctgtcac actgatgcct
     1981 gtgtctgtca agctccctgt gcagcctgtg gaaagttctg tggcaggatt cgatggccac
     2041 tgtagtggct cctactgtaa gttacgctcc atgcttcgcc ctcctggcat gagtgaccag
     2101 gacagactga gcctggaacc ttctaagctg gccaagccac cggagctgca gagccagcca
     2161 caggcctacg cgtactcaga tgtggagccc tcagcaggtg tggagcagcc acaggccgat
     2221 ggcatggctg tgtcccgctc ttccctggcc actctggaca accactgcac tgagccactg
     2281 ggcagccggg caccttcggt gacctacagg aactctgagg gacagttttt ctccagtatg
     2341 actctctggg ggctggcaat gaagacactg cagaatgaac atgagctgga gcagtgaggt
     2401 ctcgtaacac tagagagaac cgtccctcct gcccaacccg gctccctgtc ggctctgcac
     2461 aacccaggga gtgggaggaa ggcctgctcg cccctgctgg tcccagggag gtcggccaac
     2521 cgcatagggc tgctacgcag cagtcaacaa ctcagagaag cagtctaggg tgaggacagc
     2581 tgattcacat cagtgcaaca gcgcacctaa cgtcagctac tgtacatttg tcctgttatg
     2641 acatatgtat acacaaaata tagatagatt tacattttta tatgatagaa gattttagta
     2701 tcttatattt taaaatattt atacagattc tatttgtata ttaaacgtat aatttaattt
     2761 gaataaatga gctagctttt tcata
//
