LOCUS       NM_001100460            3478 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus zinc finger and BTB domain containing 42 (Zbtb42),
            mRNA.
ACCESSION   NM_001100460 XM_001477883 XM_356600 XM_914337
VERSION     NM_001100460.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3478)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 3478)
  AUTHORS   Medeiros de Araujo,J.A., Barao,S., Mateos-White,I., Espinosa,A.,
            Costa,M.R., Gil-Sanz,C. and Muller,U.
  TITLE     ZBTB20 is crucial for the specification of a subset of callosal
            projection neurons and astrocytes in the mammalian neocortex
  JOURNAL   Development 148 (16) (2021)
   PUBMED   34351428
REFERENCE   3  (bases 1 to 3478)
  AUTHORS   Devaney,S.A., Mate,S.E., Devaney,J.M. and Hoffman,E.P.
  TITLE     Characterization of the ZBTB42 gene in humans and mice
  JOURNAL   Hum Genet 129 (4), 433-441 (2011)
   PUBMED   21193930
  REMARK    GeneRIF: Data show that ZBTB42 protein is expressed in human
            skeletal muscle and a murine cell line C2C12 myotubes.
REFERENCE   4  (bases 1 to 3478)
  AUTHORS   Takahashi,A., Hirai,S., Ohtaka-Maruyama,C., Miwa,A., Hata,Y.,
            Okabe,S. and Okado,H.
  TITLE     Co-localization of a novel transcriptional repressor simiRP58 with
            RP58
  JOURNAL   Biochem Biophys Res Commun 368 (3), 637-642 (2008)
   PUBMED   18262495
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC124373.4.
            
            On or before Sep 11, 2009 this sequence version replaced
            XM_914337.2, XM_001477883.1, XM_356600.6.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: ERR3363658.3056527.1, BY210287.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-106               AC124373.4         146458-146563
            107-3478            AC124373.4         146994-150365
FEATURES             Location/Qualifiers
     source          1..3478
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="12"
                     /map="12 61.2 cM"
     gene            1..3478
                     /gene="Zbtb42"
                     /gene_synonym="EG382639; Gm5188; simiRP58"
                     /note="zinc finger and BTB domain containing 42"
                     /db_xref="GeneID:382639"
                     /db_xref="MGI:MGI:3644133"
     exon            1..106
                     /gene="Zbtb42"
                     /gene_synonym="EG382639; Gm5188; simiRP58"
                     /inference="alignment:Splign:2.1.0"
     exon            107..3478
                     /gene="Zbtb42"
                     /gene_synonym="EG382639; Gm5188; simiRP58"
                     /inference="alignment:Splign:2.1.0"
     CDS             124..1386
                     /gene="Zbtb42"
                     /gene_synonym="EG382639; Gm5188; simiRP58"
                     /note="protein simiRP58"
                     /codon_start=1
                     /product="zinc finger and BTB domain-containing protein
                     42"
                     /protein_id="NP_001093930.1"
                     /db_xref="CCDS:CCDS49190.1"
                     /db_xref="GeneID:382639"
                     /db_xref="MGI:MGI:3644133"
                     /translation="MEFPEHGVRLLGRLRQQRELGFLCDCTVLVGDARFPAHRAVLAA
                     CSVYFHLFYRDQPASSRDTVRLNGDIVTVPAFSRLLDFMYEGRLDLHNLPVEDVLAAA
                     SYLHMYDIVKVCKGRLRKKDPDLETRTLGTELPGQPPHPLPSWSPAFCQAAPKAKHPS
                     LGVKATHPLPTFGPPSWQVAEQSSGALDLSLKPSPRPEQVHPPCRLQTSLCSSVQQVA
                     QPLVKAEQDSFSEQDSSSPQSADRSPPPVCASAAQGLAVDLEPLHIEGTGSQQLGLPA
                     EPVLDSEELGPSRHLCICPLCCKLFPSTHALQLHLSAHFRERDSVRARLSPEGSVPTC
                     PLCSKTFSCTYTLKRHERTHSGEKPYTCVQCGKSFQYSHNLSRHAVVHTREKPHACRW
                     CERRFTQSGDLYRHVRKFHYGLVKPLLV"
     regulatory      3458..3463
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zbtb42"
                     /gene_synonym="EG382639; Gm5188; simiRP58"
                     /note="hexamer: AATAAA"
     polyA_site      3478
                     /gene="Zbtb42"
                     /gene_synonym="EG382639; Gm5188; simiRP58"
                     /note="major polyA site"
ORIGIN      
        1 gggtccccgc gccctcccgg ccggggcgcg ccgcccccag ttcggtgcgg tccgagctgc
       61 acgggaaagc ttgcagaacg agcggagagc cgcgcgtgcg gcgaaggtga tgactgcggc
      121 ggcatggagt tcccggagca cggcgtacgg ctgctgggcc gcctgaggca gcagcgcgag
      181 ctggggttcc tgtgcgactg cactgttctg gtgggcgacg cgcgcttccc tgcgcaccgc
      241 gctgtactgg ccgcgtgcag tgtctacttc catctcttct acagggatca gcccgcgagc
      301 agccgcgaca cggtgcggct caacggcgac atcgtcacgg tacccgcctt cagccgcctg
      361 ctggacttca tgtacgaggg ccgcttggac ctgcacaacc tacctgtcga ggacgtcctg
      421 gctgccgcca gttacctgca catgtatgac atcgtcaagg tctgcaaggg cagactcaga
      481 aagaaggacc cagatctgga gacccgtacg ctggggacag agcttcctgg gcagccacca
      541 caccccctgc cttcctggtc ccctgccttc tgccaagccg caccaaaggc caaacaccca
      601 tctctagggg tcaaggctac ccatcccctg ccaacatttg gacctccgtc ttggcaggtt
      661 gcagagcagt caagtggggc cctggacctg tcactgaagc ctagcccaag accggagcag
      721 gtacacccac cctgtcgcct ccagacatcc ctctgcagct ccgtacagca agtggcgcag
      781 cctctggtga aggctgagca agattcgttc tcagaacaag atagcagcag cccgcagagc
      841 gcggaccgat ccccaccacc agtctgtgct tctgcagccc agggcctggc agtggacttg
      901 gagccactgc acatcgaagg gacgggcagc cagcagcttg ggctgcctgc agagccagtg
      961 ctcgacagtg aagagctggg tcccagcagg cacctttgca tttgcccgct atgctgcaag
     1021 ctgttcccta gcacccacgc actgcagctg catctcagcg cccacttccg ggagcgggac
     1081 agtgtccgtg ccaggctctc ccccgagggg tccgtgccca cgtgcccact ctgcagcaag
     1141 accttctcct gcacatacac cctgaagagg catgaacgga cacactctgg ggagaagccc
     1201 tatacctgcg tgcagtgtgg caagagcttc cagtactcac acaacttaag ccggcatgct
     1261 gtggtccaca cgcgggagaa gccccatgcc tgccgctggt gtgagcgcag attcacacag
     1321 tccggtgacc tgtaccgcca tgtccgcaag ttccactatg gcctagtcaa gcccttgctt
     1381 gtgtgaagtg tttttctgta tcccccccaa ggtggaggga gaaaaggggc agggtctcct
     1441 gggtgggact ctggggcaga ggaaaaaagc acaggccggt ggtagcacta ccccaaggct
     1501 agaaggttgc accagccaac ctgaatgaat gttgctgctt cttggatggg ttgccgcctt
     1561 ctctccttct ccccacctca cacctgaggt tgtaccctgc ccagttaggg acactttctt
     1621 cctcactgtc ctctctagca aggttctaga gtgcctggcc tgcccgcaca ctgggcagtg
     1681 agaggtaact cagttttcct gccctggagc ttccctgtcc tgctgggaga cttgagagtg
     1741 tccttgtttg cctaatgcca cgatggaatg actcaacttg tcaagaaagt cattaatgca
     1801 agtgtcttaa cagggtgcac tgagtgagca ggccattcct ggtgagtgac agcaggagcc
     1861 cctgttgaga aggcctcagg cacaacaagt accagcaggg gccatagaga tgcagctggc
     1921 ctttcaggag gcatagctcc agcagggacc ccgagcatca tgaggagggc agctgaagct
     1981 gggtgtccct ggagtgggac tttggacaac gaaggagaat ttggaaatgg attgtcttta
     2041 atagctggag cctcccaagg ccactatgtg tcccctactg gttgaagatc ctgcaagtgt
     2101 cccctactgg cttcatgggg ctggtgatgg cagattttgc catgaaccaa gctttgcatg
     2161 ttgaagctga tgctgtgttc cagcaggcct gaccctggga gtcgctctgc tgctttctga
     2221 gggtctccct ggagccgtgg tcattcccag gcaccgcaca cccaaggcca gagcttggcc
     2281 agctttaaca ggagtaatgc tcgccgcacc acctcctgcc gaggggcatg agtaggagca
     2341 gctgtcacag ggagaaagga ggcagattgt cccttcatct acagccctgg aaggaaggct
     2401 ggtgcccttg aaatgtgaag aactttgccc tctgcctctg ctgtggatat gggccacctt
     2461 actttgacga cctgcacacc aagcaagcct tggtcatttc aggaagggtg tggggcagga
     2521 tgggggtggc ctcagcaagt ggtagcgctg cctgaaacaa cctgccctct ccccaacagg
     2581 gctgtctctg ctgattgcaa gtggcccaga ggacagttgg gcaagtctaa gtcatgtgtc
     2641 ttctgctaac acttgatgta tttatttgtt tgcttggtct ggagtgaagt gacagttggt
     2701 ctccccaagg tggccagatc cactgttcat ctcctaaccg tctctgtgct cgcctactat
     2761 gtccatggct gccctgggaa gctgattctg atcagtgatg ctccaagact ggaggcccag
     2821 gacaggctgc agtgctggag aagagacagt gctgtcctgg cttctgactc cacctctgga
     2881 gaggctggta ggaccctgtg actgagtgat cgctcgctca ctccctccct ccctccctca
     2941 cccaaccccg ttgtgtgtgt gtgtgtgtgt gtgtgtgtgt agtactacat gtatgcaggc
     3001 agaacacccc tgtgttggtt tttcctctag tgcttgcttt cccagggcag gttgcctacc
     3061 ctgagtcaac actggactct tgttgtcttt ggtgcacagt tactgtgaaa ttaacaaaga
     3121 atggtgactg gttatatgtt tataactggc atggttcagt tgcgtgtatg tatatgtctg
     3181 atacgctgcc tgtgtggaga gcacaggaca gctgtagaag gggtccaggt gctttctgct
     3241 gtgtggagct cccagggcca acccagctac tgttcctgcc tgtggtctca ctgctgctcc
     3301 gcccctggag ggaccactga gaaatgactc cacaggacag ttctgcccag gtttggctgg
     3361 gatctttgca cagccctgct tgcggtcagc tgcaccattc ctagaaatga gcgccgtctt
     3421 cctattccac atactctgtt ggtcacgatg gcagtgtaat aaagccaacc gcaggtga
//
