LOCUS       NM_001410323            2011 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus zinc finger and BTB domain containing 12 (Zbtb12),
            transcript variant 2, mRNA.
ACCESSION   NM_001410323 XM_006523890
VERSION     NM_001410323.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2011)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2011)
  AUTHORS   Gasser,D.L., Sternberg,N.L., Pierce,J.C., Goldner-Sauve,A.,
            Feng,H., Haq,A.K., Spies,T., Hunt,C., Buetow,K.H. and Chaplin,D.D.
  TITLE     P1 and cosmid clones define the organization of 280 kb of the mouse
            H-2 complex containing the Cps-1 and Hsp70 loci
  JOURNAL   Immunogenetics 39 (1), 48-55 (1994)
   PUBMED   7993390
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CT025759.14.
            
            On Aug 4, 2022 this sequence version replaced XM_006523890.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7345562.4483619.1,
                                           SRR13422601.1009371.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-387               CT025759.14        122566-122952
            388-2011            CT025759.14        123249-124872
FEATURES             Location/Qualifiers
     source          1..2011
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 18.43 cM"
     gene            1..2011
                     /gene="Zbtb12"
                     /gene_synonym="Bat-9; Bat9; G10; NG35"
                     /note="zinc finger and BTB domain containing 12"
                     /db_xref="GeneID:193736"
                     /db_xref="MGI:MGI:88133"
     exon            1..387
                     /gene="Zbtb12"
                     /gene_synonym="Bat-9; Bat9; G10; NG35"
                     /inference="alignment:Splign:2.1.0"
     exon            388..2011
                     /gene="Zbtb12"
                     /gene_synonym="Bat-9; Bat9; G10; NG35"
                     /inference="alignment:Splign:2.1.0"
     CDS             408..1787
                     /gene="Zbtb12"
                     /gene_synonym="Bat-9; Bat9; G10; NG35"
                     /note="isoform 1 is encoded by transcript variant 2;
                     HLA-B-associated transcript 9"
                     /codon_start=1
                     /product="zinc finger and BTB domain-containing protein 12
                     isoform 1"
                     /protein_id="NP_001397252.1"
                     /db_xref="GeneID:193736"
                     /db_xref="MGI:MGI:88133"
                     /translation="MASGVEVLRFQLPGHEAATLRNMNQLRAEERFCDVTIVADSLKF
                     RGHKVILAACSPFLRDQFLLNPSSELQVSLMHSARIVADLLLSCYTGALEFAVRDIVN
                     YLTAASYLQMEHVVEKCRNALSQFIEPKIGLKEDGVSEASLLSSVSATKSLLPPARTP
                     KPAPKPPPPPPLPPPLLRPVKLEFPLDEDLELKAEEEDEDEDEDVSDICIVKVESALE
                     VAHRLKPPGSLAGGLGIGASVSSHLGELAQSSVAPNTVTPPQGVVKACYSLSEDAEGE
                     GLLLIPGGRASVGATSGLVEAAAVAMAARGAGGSLGAGGSRGPLPGGFSSGNPLKNIK
                     CTKCPEVFQGVEKLVFHMRAQHFIFMCPRCGKQFNHSSNLNRHMNVHRGVKSHSCGIC
                     GKCFTQKSTLHDHLNLHSGARPYRCSYCDVRFAHKPAIRRHLKEQHGKTTAENVLEAG
                     VAEINVLIR"
     regulatory      1969..1974
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zbtb12"
                     /gene_synonym="Bat-9; Bat9; G10; NG35"
                     /note="hexamer: AAGAAA"
     polyA_site      2011
                     /gene="Zbtb12"
                     /gene_synonym="Bat-9; Bat9; G10; NG35"
                     /note="major polyA site"
ORIGIN      
        1 cttcctccgc cccgagtccg cgaggacgct gcgctgcgcg gggccttgga acactcggca
       61 cgagctgccc ccgcccctcc ccctcccgcc cacgcggagc cggcccgcgc gcgcaccccg
      121 tgcacccccg cgcctgcgcg ctgccccggc cctgcccgtg tgtggggggc gtcgctggcc
      181 ccgggggggt gggggaccag gggggaaaaa tcagcacgcg gaaccgggcc aggtgagagg
      241 cgcgtgcacc cagggtcgtg agtctgggtg ggggggcgtg ccacggagat ctgcgcgtgg
      301 gaggggggcg tgcacgacct gtccgggcgg tgggaggacg tgaaaagggg gactcacagc
      361 agcgcggccc aggctagagc gaggcggggc agtccactcc cgccacaatg gcctctgggg
      421 tggaagtcct gcgcttccag ctgcctggcc acgaggccgc aacgttgcgg aacatgaacc
      481 agctccgtgc agaggagcgg ttctgtgatg tgaccatcgt ggccgacagc ctcaaattcc
      541 gtggccacaa ggtcatcctg gccgcctgct caccgttcct ccgggaccag ttcttgctga
      601 accccagttc tgagctgcag gtctcactga tgcacagcgc gcgtattgtg gcggacttgc
      661 tcctctcttg ctacacaggc gccctggagt tcgcagtcag ggacatcgtg aactacctga
      721 cagcagcctc ctacctgcaa atggagcatg tagtggagaa atgccggaac gcccttagcc
      781 agttcattga gcccaaaata ggccttaaag aagatggggt cagcgaggct agcctcctaa
      841 gcagtgtcag tgccaccaag tccctcctcc ctccagccag gaccccaaag ccagctccaa
      901 aacccccacc accacctcct ctaccccctc cgctcctgcg accggtgaag ctggagtttc
      961 cgctggatga ggacctagag ctgaaggcgg aagaggagga tgaggatgaa gatgaagatg
     1021 tttctgacat ctgcatcgtc aaagtggagt cggctctaga agtggcacac cggctcaaac
     1081 cccctggaag cctagccggg ggtctgggta tcggggcctc tgtgagcagc cacctgggag
     1141 agctggccca gagtagtgtg gcccccaaca ctgttacccc accgcaaggg gtggtgaagg
     1201 catgctacag cctgtcagag gacgcggaag gggaaggcct gttgttgatc ccaggaggcc
     1261 gggccagtgt gggggccacc tcgggcctag tggaagcagc agcggtggcc atggctgccc
     1321 ggggggcggg gggcagtctg ggggcagggg gtagccgggg acctctgcct gggggcttct
     1381 caagtggaaa ccccttaaag aacatcaaat gcaccaaatg ccctgaagtg ttccagggtg
     1441 tggagaagct ggtcttccac atgcgtgcgc aacacttcat cttcatgtgc ccacgctgcg
     1501 gcaagcagtt caaccacagc agcaacctca accgccacat gaacgtccac cgtggtgtca
     1561 agtcccattc atgtggcatc tgcggcaagt gctttactca gaagtccaca ctgcacgatc
     1621 acctcaacct gcactcagga gcccggccct accggtgctc ctactgtgac gtgcgctttg
     1681 cccacaagcc cgccattagg cggcacctca aggagcagca tggcaaaacc acagctgaga
     1741 acgtgctgga agctggtgtg gctgagatca atgtcctcat ccgctgaaag gccaagaggc
     1801 tgggggcggt cctgggcccg gcagaattgg ggaggggcgg ggtttgaggg caggcaaaca
     1861 ttttgaggga ggaagactgg agagagagag agaccatgcc tcaaagagca gaagaaaaag
     1921 atggagccgg agacagggtt gataaggctg agggaatgtg ggatcccaaa gaaagatttc
     1981 ttttttgaag aggtgcataa acgatgtgga g
//
