LOCUS       NM_183088               2492 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus zinc finger BED-type containing 5 (Zbed5), transcript
            variant 1, mRNA.
ACCESSION   NM_183088 XM_355716
VERSION     NM_183088.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2492)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2492)
  AUTHORS   Ingham,N.J., Pearson,S.A., Vancollie,V.E., Rook,V., Lewis,M.A.,
            Chen,J., Buniello,A., Martelletti,E., Preite,L., Lam,C.C.,
            Weiss,F.D., Powis,Z., Suwannarat,P., Lelliott,C.J., Dawson,S.J.,
            White,J.K. and Steel,K.P.
  TITLE     Mouse screen reveals multiple new genes underlying mouse and human
            hearing loss
  JOURNAL   PLoS Biol 17 (4), e3000194 (2019)
   PUBMED   30973865
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 2492)
  AUTHORS   Dickinson,M.E., Flenniken,A.M., Ji,X., Teboul,L., Wong,M.D.,
            White,J.K., Meehan,T.F., Weninger,W.J., Westerberg,H., Adissu,H.,
            Baker,C.N., Bower,L., Brown,J.M., Caddle,L.B., Chiani,F., Clary,D.,
            Cleak,J., Daly,M.J., Denegre,J.M., Doe,B., Dolan,M.E., Edie,S.M.,
            Fuchs,H., Gailus-Durner,V., Galli,A., Gambadoro,A., Gallegos,J.,
            Guo,S., Horner,N.R., Hsu,C.W., Johnson,S.J., Kalaga,S., Keith,L.C.,
            Lanoue,L., Lawson,T.N., Lek,M., Mark,M., Marschall,S., Mason,J.,
            McElwee,M.L., Newbigging,S., Nutter,L.M., Peterson,K.A.,
            Ramirez-Solis,R., Rowland,D.J., Ryder,E., Samocha,K.E.,
            Seavitt,J.R., Selloum,M., Szoke-Kovacs,Z., Tamura,M., Trainor,A.G.,
            Tudose,I., Wakana,S., Warren,J., Wendling,O., West,D.B., Wong,L.,
            Yoshiki,A., MacArthur,D.G., Tocchini-Valentini,G.P., Gao,X.,
            Flicek,P., Bradley,A., Skarnes,W.C., Justice,M.J., Parkinson,H.E.,
            Moore,M., Wells,S., Braun,R.E., Svenson,K.L., de Angelis,M.H.,
            Herault,Y., Mohun,T., Mallon,A.M., Henkelman,R.M., Brown,S.D.,
            Adams,D.J., Lloyd,K.C., McKerlie,C., Beaudet,A.L., Bucan,M. and
            Murray,S.A.
  CONSRTM   International Mouse Phenotyping Consortium; Jackson Laboratory;
            Infrastructure Nationale PHENOMIN, Institut Clinique de la Souris
            (ICS); Charles River Laboratories; MRC Harwell; Toronto Centre for
            Phenogenomics; Wellcome Trust Sanger Institute; RIKEN BioResource
            Center
  TITLE     High-throughput discovery of novel developmental phenotypes
  JOURNAL   Nature 537 (7621), 508-514 (2016)
   PUBMED   27626380
  REMARK    Erratum:[Nature. 2017 Nov 16;551(7680):398. PMID: 29144450]
REFERENCE   4  (bases 1 to 2492)
  AUTHORS   Makeyev,A.V. and Bayarsaihan,D.
  TITLE     New TFII-I family target genes involved in embryonic development
  JOURNAL   Biochem Biophys Res Commun 386 (4), 554-558 (2009)
   PUBMED   19527686
  REMARK    GeneRIF: Scand3 is down-regulated during mouse embryonic stem cell
            differentiation.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK010551.1 and AC164071.3.
            
            On Mar 24, 2007 this sequence version replaced NM_183088.1.
            
            Transcript Variant: This variant (1) encodes the longer isoform
            (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK010551.1, BC137610.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-531               AK010551.1         2-532
            532-2492            AC164071.3         50301-52261
FEATURES             Location/Qualifiers
     source          1..2492
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 68.26 cM"
     gene            1..2492
                     /gene="Zbed5"
                     /gene_synonym="2410018M08Rik; Chchd2l; Scand3"
                     /note="zinc finger BED-type containing 5"
                     /db_xref="GeneID:71970"
                     /db_xref="MGI:MGI:1919220"
     exon            1..130
                     /gene="Zbed5"
                     /gene_synonym="2410018M08Rik; Chchd2l; Scand3"
                     /inference="alignment:Splign:2.1.0"
     exon            131..380
                     /gene="Zbed5"
                     /gene_synonym="2410018M08Rik; Chchd2l; Scand3"
                     /inference="alignment:Splign:2.1.0"
     exon            381..531
                     /gene="Zbed5"
                     /gene_synonym="2410018M08Rik; Chchd2l; Scand3"
                     /inference="alignment:Splign:2.1.0"
     exon            532..2492
                     /gene="Zbed5"
                     /gene_synonym="2410018M08Rik; Chchd2l; Scand3"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2471..2476
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zbed5"
                     /gene_synonym="2410018M08Rik; Chchd2l; Scand3"
                     /note="hexamer: AATAAA"
     polyA_site      2492
                     /gene="Zbed5"
                     /gene_synonym="2410018M08Rik; Chchd2l; Scand3"
                     /note="major polyA site"
ORIGIN      
        1 accttcctcc ctccttgctg gacgcccgtg ggcgttcccg agtttgttgt gtctggacgc
       61 ttaaggtgca gacaccgagg atgccacgtg gaagccgaat ccgcacttcc cgcgtgaccc
      121 ttctggccgg ccgggcccct cagatgaggg ctgctccccg aagagcacct gcagctcagc
      181 ctccagcagc agctgcgcca tctgcagttg gctcacctgc cgctgcgccc cggcagccag
      241 gcctgatggc ccagatggct accaccgcgg ccggtgtggc tgtgggctct gcagtgggac
      301 acaccctggg tcacgccatc actgggggct tcagcggagg tggcagtgct gagcccgcaa
      361 agcccgacat cacttaccag gagcctcagg gagcccagct gcagaaccag cagtcttttg
      421 gaccttgctc tctagagatc aagcagtttc tggagtgtgc tcagaaccag agcgatgtca
      481 agctctgtga gggcttcaac gaggtgctgc ggcagtgcag gattgcaaat gtggaccatc
      541 ccaggccagt ggatcatgga gagaggaacg ttaagagaag aaaatataat gagggttttt
      601 tgcagtatgg ttttacctca accatcacag taggaattga gagaccacag tgtgtcattt
      661 gtggggtggt tctgtcggcg gagtcgatga aacccaacaa actgaaacgc cattttgaga
      721 gcaagcattc cagcttcgcc ggcaaggata ccaactattt cagaagcaaa gctgatggac
      781 tcaagaaagc cagacctgat actggcagca agtccaacaa acagaacgtg gcagccgtgg
      841 aaacttccta tttggtggcc ctcagaattg ccagagatat gaaaccgcac acctttgcag
      901 agcacttact gttcccggtg gccaaggaca gggttcgcgt catgatcgga gacgaatttg
      961 ttacaaaact gagtgcagtc tccttatcta acgacactgt ccgaagaaga atacatgaca
     1021 tgtctgctga tattcttgat caggtggtcc aggaaattaa atctgctcca cttccaatat
     1081 gcagcatcca gctcgatgaa tcgacagacg ttgcaaactg tttacagtta atggtttacg
     1141 tgaggtatat taatgatggt gactttaaag atgagtttct ttgctgcaaa cctcttgaaa
     1201 ggacagctac tgcccttgat gtatttgagg cagtcgactc gtttctgaga cagcatgaga
     1261 tctcttggaa aagcatctgt ggagtttgca cagacggtgc cccagctacg ctgggctgtc
     1321 aatctgggtt tcagcgcctg gtcctaaatg agtccccaaa agccattgga gctcattgta
     1381 tgcttcatct gcaaacatta gcaatgaaga cgctgcccca agacttccag gaagtaatga
     1441 aaagtgtcct gagttctgtc aatttcgtaa aggcgagttc tttgaacagt cgactgtttc
     1501 tgcagctctg cagtgattta gatgagccaa gcaaaaccct gctacttcat actgaaggga
     1561 gatggctgtc aagagggaaa gttctaaaac gtatctttga gctccgtgac gaactcaaaa
     1621 tgttttttaa ccaaaaagca atacggcagt tcgaagcact tttcagtgat aacagtgcat
     1681 tgcagaaggt agcttatttg gtcgatatct ttaccatttt gaatgagttg aatttatcac
     1741 tgcaaggacc aaattcaacc tgcctggatc tgtctgaaaa gatccactca ttccaaatga
     1801 aacttcaact ctggcaaaaa aaattggatg aaaataaatt ttacatgttg cctaccttat
     1861 ccgccttctt tgaggaacat gacattgaac agcacaaaag gattacagtg gtgatttccg
     1921 tgaaagaaca cttggacatg cttgcaagtg aaatttcctg gtactttcca aatctacccg
     1981 agattccgtt tgcactcgcc aggagcccgt tctcagtcaa agctgaagat gttcccgaga
     2041 ctgcgcaaga agatttcacc agacttacca acagcgacgc ggcgagagct gatttctcca
     2101 caatgccagt cacacagttc tgggtcaagt gtttgcagtc atacccagtt ctgtcagaga
     2161 tggtgttgcg cctcctcctt ccttttccaa caacatatct gtgtgaaaca gggttctcaa
     2221 gtttgttagt tatcaagtct aaatacagaa gtagacttgt ggtggaagat gatcttcgct
     2281 gtgctcttgc aaagaccacc ccgagaattt ctgatctggt gagaaagaag cagtctcaac
     2341 cttcgcactg aggttggctt tttatgaaca gtatcccgaa atgtagcagt gtagtttatg
     2401 tcatgatgtt aagactgtta acagtgccac accgtgcttc aagacaaaat ctcatgtgtt
     2461 tgtaattagt aataaatatt tccacaaaga aa
//
