LOCUS       NM_181412               5403 bp    mRNA    linear   ROD 21-DEC-2022
DEFINITION  Mus musculus zinc finger, BED type containing 4 (Zbed4), mRNA.
ACCESSION   NM_181412 XM_128078
VERSION     NM_181412.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 5403)
  AUTHORS   Dickinson ME, Flenniken AM, Ji X, Teboul L, Wong MD, White JK,
            Meehan TF, Weninger WJ, Westerberg H, Adissu H, Baker CN, Bower L,
            Brown JM, Caddle LB, Chiani F, Clary D, Cleak J, Daly MJ, Denegre
            JM, Doe B, Dolan ME, Edie SM, Fuchs H, Gailus-Durner V, Galli A,
            Gambadoro A, Gallegos J, Guo S, Horner NR, Hsu CW, Johnson SJ,
            Kalaga S, Keith LC, Lanoue L, Lawson TN, Lek M, Mark M, Marschall
            S, Mason J, McElwee ML, Newbigging S, Nutter LM, Peterson KA,
            Ramirez-Solis R, Rowland DJ, Ryder E, Samocha KE, Seavitt JR,
            Selloum M, Szoke-Kovacs Z, Tamura M, Trainor AG, Tudose I, Wakana
            S, Warren J, Wendling O, West DB, Wong L, Yoshiki A, MacArthur DG,
            Tocchini-Valentini GP, Gao X, Flicek P, Bradley A, Skarnes WC,
            Justice MJ, Parkinson HE, Moore M, Wells S, Braun RE, Svenson KL,
            de Angelis MH, Herault Y, Mohun T, Mallon AM, Henkelman RM, Brown
            SD, Adams DJ, Lloyd KC, McKerlie C, Beaudet AL, Bucan M and Murray
            SA.
  CONSRTM   International Mouse Phenotyping Consortium; Jackson Laboratory;
            Infrastructure Nationale PHENOMIN, Institut Clinique de la Souris
            (ICS); Charles River Laboratories; MRC Harwell; Toronto Centre for
            Phenogenomics; Wellcome Trust Sanger Institute; RIKEN BioResource
            Center
  TITLE     High-throughput discovery of novel developmental phenotypes
  JOURNAL   Nature 537 (7621), 508-514 (2016)
   PUBMED   27626380
  REMARK    Erratum:[Nature. 2017 Nov 16;551(7680):398. PMID: 29144450]
REFERENCE   2  (bases 1 to 5403)
  AUTHORS   Koscielny G, Yaikhom G, Iyer V, Meehan TF, Morgan H,
            Atienza-Herrero J, Blake A, Chen CK, Easty R, Di Fenza A, Fiegel T,
            Grifiths M, Horne A, Karp NA, Kurbatova N, Mason JC, Matthews P,
            Oakley DJ, Qazi A, Regnart J, Retha A, Santos LA, Sneddon DJ,
            Warren J, Westerberg H, Wilson RJ, Melvin DG, Smedley D, Brown SD,
            Flicek P, Skarnes WC, Mallon AM and Parkinson H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
REFERENCE   3  (bases 1 to 5403)
  AUTHORS   Mokhonov VV, Theendakara VP, Gribanova YE, Ahmedli NB and Farber
            DB.
  TITLE     Sequence-specific binding of recombinant Zbed4 to DNA: insights
            into Zbed4 participation in gene transcription and its association
            with other proteins
  JOURNAL   PLoS One 7 (5), e35317 (2012)
   PUBMED   22693546
  REMARK    GeneRIF: structural and functional properties of Zbed4
REFERENCE   4  (bases 1 to 5403)
  AUTHORS   Saghizadeh M, Gribanova Y, Akhmedov NB and Farber DB.
  TITLE     ZBED4, a cone and Muller cell protein in human retina, has a
            different cellular expression in mouse
  JOURNAL   Mol Vis 17, 2011-2018 (2011)
   PUBMED   21850176
  REMARK    GeneRIF: The patterns of spatial and temporal expression of Zbed4
            in the mouse retina suggest a possible involvement of this protein
            in retinal morphogenesis and Muller cell function.
REFERENCE   5  (bases 1 to 5403)
  AUTHORS   Guo G, Huss M, Tong GQ, Wang C, Li Sun L, Clarke ND and Robson P.
  TITLE     Resolution of cell fate decisions revealed by single-cell gene
            expression analysis from zygote to blastocyst
  JOURNAL   Dev Cell 18 (4), 675-685 (2010)
   PUBMED   20412781
REFERENCE   6  (bases 1 to 5403)
  AUTHORS   Saghizadeh M, Akhmedov NB, Yamashita CK, Gribanova Y, Theendakara
            V, Mendoza E, Nelson SF, Ljubimov AV and Farber DB.
  TITLE     ZBED4, a BED-type zinc-finger protein in the cones of the human
            retina
  JOURNAL   Invest Ophthalmol Vis Sci 50 (8), 3580-3588 (2009)
   PUBMED   19369242
REFERENCE   7  (bases 1 to 5403)
  AUTHORS   Bulfone A, Carotenuto P, Faedo A, Aglio V, Garzia L, Bello AM,
            Basile A, Andre A, Cocchia M, Guardiola O, Ballabio A, Rubenstein
            JL and Zollo M.
  TITLE     Telencephalic embryonic subtractive sequences: a unique collection
            of neurodevelopmental genes
  JOURNAL   J Neurosci 25 (33), 7586-7600 (2005)
   PUBMED   16107646
REFERENCE   8  (bases 1 to 5403)
  AUTHORS   Okazaki N, Kikuno R, Ohara R, Inamoto S, Aizawa H, Yuasa S,
            Nakajima D, Nagase T, Ohara O and Koga H.
  TITLE     Prediction of the coding sequences of mouse homologues of KIAA
            gene: II. The complete nucleotide sequences of 400 mouse
            KIAA-homologous cDNAs identified by screening of terminal sequences
            of cDNA clones randomly sampled from size-fractionated libraries
  JOURNAL   DNA Res 10 (1), 35-48 (2003)
   PUBMED   12693553
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC117700.22, CD350815.1 and BC052174.1.
            
            [WARNING] On Jun 29, 2023 this sequence was replaced by
            NM_181412.4.
            
            On Sep 14, 2006 this sequence version replaced NM_181412.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK122335.1, CD350815.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849376
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-13                AC117700.22        152139-152151       c
            14-655              CD350815.1         1-642
            656-4686            BC052174.1         559-4589
            4687-5052           AC117700.22        119668-120033       c
            5053-5403           BC052174.1         4957-5307
FEATURES             Location/Qualifiers
     source          1..5403
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="15"
                     /map="15"
     gene            1..5403
                     /gene="Zbed4"
                     /gene_synonym="1700009F06Rik"
                     /note="zinc finger, BED type containing 4"
                     /db_xref="GeneID:223773"
                     /db_xref="MGI:MGI:2682302"
     exon            1..92
                     /gene="Zbed4"
                     /gene_synonym="1700009F06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            93..266
                     /gene="Zbed4"
                     /gene_synonym="1700009F06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            267..5374
                     /gene="Zbed4"
                     /gene_synonym="1700009F06Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             589..4095
                     /gene="Zbed4"
                     /gene_synonym="1700009F06Rik"
                     /note="zinc finger, BED domain containing 4"
                     /codon_start=1
                     /product="zinc finger BED domain-containing protein 4"
                     /protein_id="NP_852077.1"
                     /db_xref="CCDS:CCDS27731.1"
                     /db_xref="GeneID:223773"
                     /db_xref="MGI:MGI:2682302"
                     /translation="MEDKQETCPKGDSDFVSDKVNFKTEEDDDQTPCHSLEQVDFKSE
                     SEDMRQTDSGDEQADIRAASCACQPSGKFLAAESEDDYGSLFSQYSSTLYSVAMEAVT
                     QSLLSSRHISSRKKSPAWKHFFISPRDSTKAICTYCMKEFSRGKNEKDLSTSCLMRHV
                     RRAHPTKLIQENGSLSAGSSFSPPSLLLPPQPADVGDLSTVLSPVRLVQKMAPKIPSP
                     DQIMEESVTVVSSEELSSDVSVTEKYSREEALAGSSPNLSMLHYDDASETMADRNLSL
                     PKSTSGSRRRSAVWKHFYLSPLDSSKAVCVHCMNEFSRGKNGKDLGTSCLIRHMWRAH
                     RSIVLQENGGNTGIPPLYPMPPTLLPALLPPEGDLNSASLSPGKQVKESPSASSSPER
                     LPEDLSSHTNPGDVSREDVSMLSSSDDLGEASVVSSPEKQPADTVNPRFESGTVFQQN
                     KKVMRRLKSEVWHHFSLAPMDSLKAVCRYCSCVISRGKKGDVGTSCLMRHLYRRHPEV
                     VGNQKDFLGASLANSPYATLASAESSSKLTDLPAVVRKNHQGVFPTNSKKTSKLWNHF
                     SICSADSTKVVCLHCGRTISRGKKPTNLGTSCLLRHLQRFHGHVLKNDVSEATLSRSP
                     GIRRPLGIELSGPSSFRDSTEKFYDSHPVAKKITSLIAEMIALDLQPYSLVDNVGFNR
                     LLEYLKPQYSLPSPSYFSRTAIPGMYDNVKQIIMSHLKEAESGVVHFTSGIWMSSQTR
                     EYLTLTAHWVTFASAVRPHCEDHHCSALLDVSQIDCDYSGNSIQKQLECWWEAWVTSI
                     GLQIGITVTDNPSIGKMLSEGEHSSVQCFSHTVNLIVSEAIKSQRMVQNLLSIARKLC
                     ERVHRSPRAREKLAELQKEYELPQHQLIQDVPSKWSTSFHMLERLIEQKRAVNEVSIE
                     CNFRELISCDQWEVMQSVCHVLRPFDAASREMSAHMSTLSQVIPMIHILSRKVEMLFG
                     ETMGIDTMLKSLKEAMASRLSATLHDPRYIFATLLDPRYKASLFTEEEAEQYRQDLIR
                     ELEILNSTSEDTATSNGCDSGSPLKDTGTEESLWSLAPIKRDQREKLPEDMVLAYLEE
                     EVLEHSCDPLTYWNLKRSSWPGLSTLAVRFLGCPPSTVPSEKLFSTPMDAGSFGQPRL
                     MMEHFEKLIFLKVNLPLICFQY"
ORIGIN      
        1 ggggcagaca aagcggctaa tgaatgggcg cgcccgtcgc gctgttcgca gcccgcgggc
       61 ccgcgcagcg cagcgcggag ccggcgcctc aggtctctga tgggcctaga gtttggagcg
      121 agaactggga agcagagctc tagaagcatg gagaccataa gtgaccatgg tcactgtctc
      181 ttcaccccat gtctgcactt tttatgtacc tggcttcaaa tactttagtt tctacttctg
      241 gttgacctac tgagaggagg gcataggaaa tgaaggactg tgtgtgccct caagatggcg
      301 gggctcctga cttggagaag aggaagaggt ctatgctgca cgcattggtt tatacaagaa
      361 gtatttggtt gcagtactcc tacagaacag cactccatgc cctgtgacag tgtgcttgtg
      421 tgagctttcc agtgacattc atggtcagcc atagtaaaca gcctagaaaa tgagattatg
      481 aaagagtgaa taaaatctac attagggttc acaagtggac attataagca gtttttatta
      541 acgtaagatg tcaggatgat aaagcaacca ggataattat ggttggtcat ggaggataag
      601 caagaaactt gtcccaaggg ggacagtgat tttgtttctg acaaagtaaa tttcaaaacg
      661 gaggaagatg atgatcaaac tccttgtcac agtttggaac aagtggactt taaaagtgag
      721 tcagaggata tgagacagac agacagtggc gatgaacagg cagacatcag ggcagcgagc
      781 tgtgcctgtc agccctctgg gaagttctta gctgccgaga gtgaggatga ctatggctca
      841 ctcttctccc agtatagtag cacactgtac agcgtagcca tggaagctgt gacccagagc
      901 cttctttcca gtcgacacat aagctccagg aagaagtctc cagcctggaa gcatttcttt
      961 atttcccctc gagatagcac taaggctatc tgcacatact gtatgaaaga gttcagtagg
     1021 ggcaagaatg agaaagacct gagtacaagt tgcctcatga gacatgtgag gcgggcacac
     1081 cccaccaagc tcattcaaga aaatggaagt ctatcggcag ggtcctcctt ttcccctccc
     1141 tctctgttgc ttccaccaca gcctgcagat gtgggagacc ttagcactgt gctctcgcct
     1201 gtcagacttg tccagaaaat ggctcccaag atcccatccc ctgaccaaat aatggaagag
     1261 tctgtgactg tagtttcttc tgaagagttg tcctctgatg tgtctgtcac tgaaaagtac
     1321 agcagagagg aggccttggc aggctcctcc cccaacctct ccatgctcca ttatgacgac
     1381 gcttcagaaa ccatggcaga cagaaacctt tctcttccca aaagcacatc tgggtccagg
     1441 aggaggtcag ccgtctggaa gcacttctac ttgtcacccc ttgatagctc caaggctgtc
     1501 tgtgtccact gtatgaatga gttcagtaga gggaaaaatg ggaaggacct gggtacaagc
     1561 tgcctcatca ggcacatgtg gagagcacat cgctccattg tactgcagga gaacgggggc
     1621 aacacaggca tcccaccatt gtaccctatg ccccccaccc tgctgcctgc cctgctgccc
     1681 ccagaagggg atctcaactc cgcatcgttg tctccaggca aacaagtcaa agagtcccct
     1741 tctgcctcct catccccaga aaggcttccg gaggacctgt catcacacac taatcctggg
     1801 gatgtatccc gggaagatgt gtccatgttg tcatcctctg atgacttggg ggaggcctct
     1861 gtagtgtctt ctccagagaa gcagccagcg gacacggtaa atccaaggtt tgaatcaggt
     1921 actgttttcc agcaaaataa gaaggtgatg agaagactaa agtcagaagt ctggcatcac
     1981 ttttccctgg cccccatgga cagtctcaaa gcagtgtgcc ggtactgtag ctgcgttatt
     2041 agtcggggga agaagggaga tgttggcacc agttgtttga tgcgacacct gtacagacgc
     2101 caccctgagg tggttgggaa ccagaaggac tttctgggtg caagtttggc aaactctcca
     2161 tatgccactt tggcttctgc agaaagctcc tccaagttaa ctgacttgcc agcagtggtc
     2221 agaaaaaacc atcaaggtgt gtttcctact aatagcaaga agacctcaaa gctgtggaat
     2281 cacttttcta tttgttcagc agactcaaca aaggtggtgt gcctgcactg tggccggacc
     2341 atcagcaggg gcaagaaacc caccaacctg ggcaccagct gtctcctgag acatctgcag
     2401 cggttccatg gccatgtact caagaatgat gtctcagagg ccactctgtc ccgttctcca
     2461 ggcatccgga ggcctctggg catagagctc tcagggcctt cctctttccg tgactccaca
     2521 gagaagttct atgactctca tccagttgcc aaaaaaatca caagtctcat agctgaaatg
     2581 attgcacttg accttcagcc atattccctt gtagacaacg ttggctttaa caggctgctc
     2641 gaatacttga aacctcagta ctctttaccc tccccttcct acttctctag aacagctatc
     2701 ccaggtatgt atgacaatgt gaaacagata attatgtcac atctgaagga agctgagagt
     2761 ggtgtggttc acttcacctc tggaatatgg atgagtagcc agactcgtga atacctgacc
     2821 cttacagctc actgggtcac cttcgcatcc gctgtccgac cacattgtga ggaccaccat
     2881 tgctcagcac ttttagatgt ctcacaaatc gactgtgact atagtggaaa tagcattcag
     2941 aagcagctgg agtgttggtg ggaagcctgg gtgacttcca ttggccttca gattggcatc
     3001 actgtcactg acaatccaag catagggaag atgctgagtg agggtgaaca ctcaagtgtg
     3061 cagtgcttca gtcacacagt gaatctgatt gtgagcgagg ctatcaagag ccagaggatg
     3121 gtgcagaact tactgagtat tgcccggaag ctgtgtgagc gggtccatcg gtcacccaga
     3181 gcaagagaga agttagcaga actgcagaaa gagtacgagc tgccacagca ccagctgatc
     3241 caggatgtac cgtctaagtg gagcacatcg ttccacatgc tcgaacgtct gattgagcag
     3301 aagagggcag ttaatgaggt atccattgag tgtaacttca gagaattgat cagctgtgac
     3361 cagtgggagg tcatgcagtc tgtgtgccat gtgctgagac catttgatgc tgcaagccga
     3421 gagatgagtg cccacatgtc tacgctgagc caggtcatcc ccatgatcca catcctcagc
     3481 agaaaagtgg agatgctgtt tggggagacc atgggcattg acaccatgct taagtccctg
     3541 aaggaagcca tggcaagccg cctgtctgcc acactccatg accccaggta catctttgcc
     3601 acactgctgg accctcgcta caaagcttcc ctgttcacag aggaggaggc agagcagtac
     3661 aggcaagact taatcaggga gctagaaata ctgaattcta cctcagagga cactgccacc
     3721 tccaatggct gtgactcagg gtccccactt aaagacactg gcacagagga gagcctgtgg
     3781 tcactcgcac cgataaagag agatcagaga gagaagctac ctgaagacat ggtgcttgcg
     3841 tatttggagg aagaggtgct ggaacacagc tgtgacccac tcacctactg gaacctaaag
     3901 cggtcatcgt ggcctgggct gtctacctta gcagttcgat ttctgggatg tcccccaagt
     3961 acagtcccct cagaaaagct gttcagcaca cccatggatg ctggcagctt tggccagccc
     4021 aggctcatga tggagcattt tgaaaagctc atctttttaa aagtgaatct tcctttaata
     4081 tgctttcagt attgaactca gagatggagc caccagactg gaaacgtgct tcagagtgct
     4141 agctattgta ccagggctga cttgcctggc agggccatgt aggacaccag accaggcatc
     4201 tggggctacc tgccagttct caccataata tccacatgtg ccttactcct ccttcaggcc
     4261 aggtgtcaag gtgcgttttc agaagcccac tagaaacagt cttggcaatt atgaaatagg
     4321 atgatcaggt ttaaaactat aaaggttttt tgttttgttt tgaggggata gtaatctgtt
     4381 ttactagaat gaaaggaaga tgtaaacaat tttattatgt agggttttta ttcagttgtg
     4441 taaaaaccac aaatcaggtg ctgtatttta attaaatatt ttaattgcaa caaaacagct
     4501 tttgtggctg ttaaatgaaa cctgtaaata ggaggtggag gttaagccat cctgactgaa
     4561 cagttcttaa ccacaggctc caaaagtatg tcctagagag aatattctgg aagctgttta
     4621 cagaaccagg catttgaaaa caaaactgaa cttgggcata tcatggagtg tcaatcacat
     4681 ggctaattgg tcatgagaat ggtcccatgt caggtgttgc attcaggttt tacacggtca
     4741 gttaactcag agatatccca cttatcatga gccccttgaa attggatcca ggttttaaag
     4801 tcatgcttag gacttcacca gagcatgata tgacacgttt acaacagatg gcctgctgat
     4861 ccaatctcca tgcctctggt ttactttttg catctctata caataaagct atctcataag
     4921 aagtatgcac tgacccctca gtttgaccag atagcgctca gattctactt tgaggaggta
     4981 gcttgtcgac agggaaagcg cttgtttatt gcagtcatga gaaaagcctt aggcatttag
     5041 attttttttt ttcctatgat agggaagcct caaccatcac tgggacatta tagagtccca
     5101 aggataccaa catgaagtat cagctatcag actctttacc agactccaaa gtttttgctt
     5161 atgtctaaaa gaaaaagttt ttcattttct catttcaaat cagttaaata ttctgggtga
     5221 aacaaatcac tcattgcctc tgacctttta gaaaacaaat gttgtgttga aatactgtgt
     5281 gggctcggtc tgagtttgcc tggactgtgc tttagtgtat ttataaatga cgaacctgga
     5341 ttctgaaatt aaacttttta tttgcgattt tctaaaaaaa aaaaaaaaaa aaaaaaaaaa
     5401 aaa
//
