LOCUS       NM_172515               2435 bp    mRNA    linear   ROD 13-JUN-2024
DEFINITION  Mus musculus zinc finger, B-box domain containing (Zbbx),
            transcript variant 1, mRNA.
ACCESSION   NM_172515
VERSION     NM_172515.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2435)
  AUTHORS   Wiese,C.B., Ireland,S., Fleming,N.L., Yu,J., Valerius,M.T.,
            Georgas,K., Chiu,H.S., Brennan,J., Armstrong,J., Little,M.H.,
            McMahon,A.P. and Southard-Smith,E.M.
  TITLE     A genome-wide screen to identify transcription factors expressed in
            pelvic Ganglia of the lower urinary tract
  JOURNAL   Front Neurosci 6, 130 (2012)
   PUBMED   22988430
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC125332.3 and AC121928.2.
            
            On Aug 26, 2022 this sequence version replaced NM_172515.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC050789.1, AK133102.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849381 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-153               AC125332.3         54171-54323
            154-202             AC125332.3         56781-56829
            203-309             AC125332.3         58275-58381
            310-405             AC125332.3         61402-61497
            406-552             AC125332.3         85687-85833
            553-727             AC125332.3         92113-92287
            728-863             AC125332.3         104714-104849
            864-973             AC125332.3         112361-112470
            974-1074            AC125332.3         112814-112914
            1075-1154           AC125332.3         114207-114286
            1155-1294           AC125332.3         116043-116182
            1295-1584           AC125332.3         119234-119523
            1585-1735           AC121928.2         174221-174371       c
            1736-1858           AC121928.2         164122-164244       c
            1859-2116           AC121928.2         154962-155219       c
            2117-2252           AC121928.2         142473-142608       c
            2253-2435           AC121928.2         140496-140678       c
FEATURES             Location/Qualifiers
     source          1..2435
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="3"
                     /map="3 33.72 cM"
     gene            1..2435
                     /gene="Zbbx"
                     /gene_synonym="4931432L23"
                     /note="zinc finger, B-box domain containing"
                     /db_xref="GeneID:213234"
                     /db_xref="MGI:MGI:2674085"
     exon            1..153
                     /gene="Zbbx"
                     /gene_synonym="4931432L23"
                     /inference="alignment:Splign:2.1.0"
     exon            154..202
                     /gene="Zbbx"
                     /gene_synonym="4931432L23"
                     /inference="alignment:Splign:2.1.0"
     exon            203..309
                     /gene="Zbbx"
                     /gene_synonym="4931432L23"
                     /inference="alignment:Splign:2.1.0"
     CDS             229..2379
                     /gene="Zbbx"
                     /gene_synonym="4931432L23"
                     /note="isoform 1 is encoded by transcript variant 1; zinc
                     finger B-box domain-containing protein 1"
                     /codon_start=1
                     /product="zinc finger B-box domain-containing protein 1
                     isoform 1"
                     /protein_id="NP_766103.2"
                     /db_xref="CCDS:CCDS17412.1"
                     /db_xref="GeneID:213234"
                     /db_xref="MGI:MGI:2674085"
                     /translation="MAHSTGSENPKTKRKVCGQCENKAALLVCLECGEDYCSGCFAKM
                     HQKGALKFHRTTLLQPKSQILSNILIAAHQFIKEENPPNEGNHPAEASSKSQQKPKAL
                     LQNSSEVGATASEGGEGENPRCKVMWEMPFDEEASAQSFREALTQWRAGHQEENKEEE
                     VHAKKPVFIFLDSVEECEVQTNLKMWTEPINIEFTEDSLSYMETLWLKKYRRTPQEQL
                     RTMLPNTFTHPHQATAEAQCTQNENESDSDVEEIKIKSPPLFMPVEKLNIERPPPSLT
                     IVELDDTHGAEFEDPGIAVPYRVELADSESQLSSTFTDYQTCFPCENEIHHHLIFNKG
                     KADLLSLCLRTNSRYHKDDIKDFGNTVESCTYSDEFKKIGETTSFEKNETEKNIDPQN
                     NKDSVDSCMSLGSKGSLPTIDSSTSFIEENSSQDTNTSLKCSNQNERSNLGNSKTAKE
                     PLFQKVTIRKKLIKERYQGPKKFYSVDKNERLDVFPSSSIKGSHSCSEITSTVSEDKM
                     WIPLSSLSGYAGSADALCDQQSDENPLPNMQQQKSGQKSQRPSTANIPISNPDQKDTS
                     CLLFSYTRSKSAAAQMPSRAASEISEIEYIDVTDQSELFGGNTADRQALDTLEKELNI
                     LRKPADPSEDPHSLPSEELQAFNDNFLTLSQMSKDLLEMSRESDPHGAESSSSGRNPE
                     IQPLLSLGDYSTDEEEDEFLDKQHVIKLPWEKRA"
     exon            310..405
                     /gene="Zbbx"
                     /gene_synonym="4931432L23"
                     /inference="alignment:Splign:2.1.0"
     exon            406..552
                     /gene="Zbbx"
                     /gene_synonym="4931432L23"
                     /inference="alignment:Splign:2.1.0"
     exon            553..727
                     /gene="Zbbx"
                     /gene_synonym="4931432L23"
                     /inference="alignment:Splign:2.1.0"
     exon            728..863
                     /gene="Zbbx"
                     /gene_synonym="4931432L23"
                     /inference="alignment:Splign:2.1.0"
     exon            864..973
                     /gene="Zbbx"
                     /gene_synonym="4931432L23"
                     /inference="alignment:Splign:2.1.0"
     exon            974..1074
                     /gene="Zbbx"
                     /gene_synonym="4931432L23"
                     /inference="alignment:Splign:2.1.0"
     exon            1075..1154
                     /gene="Zbbx"
                     /gene_synonym="4931432L23"
                     /inference="alignment:Splign:2.1.0"
     exon            1155..1294
                     /gene="Zbbx"
                     /gene_synonym="4931432L23"
                     /inference="alignment:Splign:2.1.0"
     exon            1295..1584
                     /gene="Zbbx"
                     /gene_synonym="4931432L23"
                     /inference="alignment:Splign:2.1.0"
     exon            1585..1735
                     /gene="Zbbx"
                     /gene_synonym="4931432L23"
                     /inference="alignment:Splign:2.1.0"
     exon            1736..1858
                     /gene="Zbbx"
                     /gene_synonym="4931432L23"
                     /inference="alignment:Splign:2.1.0"
     exon            1859..2116
                     /gene="Zbbx"
                     /gene_synonym="4931432L23"
                     /inference="alignment:Splign:2.1.0"
     exon            2117..2252
                     /gene="Zbbx"
                     /gene_synonym="4931432L23"
                     /inference="alignment:Splign:2.1.0"
     exon            2253..2435
                     /gene="Zbbx"
                     /gene_synonym="4931432L23"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2410..2415
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zbbx"
                     /gene_synonym="4931432L23"
                     /note="hexamer: AATAAA"
     polyA_site      2435
                     /gene="Zbbx"
                     /gene_synonym="4931432L23"
                     /note="major polyA site"
ORIGIN      
        1 gatcatgctt gacactgaga acatctgtgt ttgggatttt gaaggcatgg acatttagaa
       61 tgatgtctag ctgcaagatt tgattacaat ggtggggcag ctagaggaac ttaggggctg
      121 gagtattaga ggatcttcag ggctggatgt cagctctctg ctggaaaagt gaaattgaag
      181 ttacttaagg aagagattca agttccagca aaacaactta gttacaaaat ggcacattct
      241 actggcagtg aaaaccctaa gactaaacgg aaagtttgtg gacagtgcga gaacaaagct
      301 gctctccttg tctgcctgga atgtggcgaa gactattgtt caggctgctt tgctaaaatg
      361 caccagaagg gggcactgaa gttccaccga acaactctct tacagccaaa atctcaaatc
      421 ttatccaaca tattaattgc tgctcatcag tttataaagg aagaaaatcc ccccaatgaa
      481 ggaaaccatc ctgcagaagc atcgagtaaa agtcagcaga aacccaaagc cctccttcag
      541 aacagctctg aggtaggagc tacagcctca gaaggaggag aaggagaaaa cccaaggtgc
      601 aaggtcatgt gggaaatgcc ttttgatgaa gaagcatctg cccagtcctt ccgagaagcc
      661 ttgacacagt ggcgagctgg gcatcaggag gaaaacaagg aggaggaagt gcatgcaaaa
      721 aaaccagtgt ttattttttt agactctgtg gaagagtgtg aagtacaaac taatttgaaa
      781 atgtggactg aaccaattaa tatcgaattc acagaagaca gcctgtcata tatggaaaca
      841 ttatggctca aaaagtacag aagaactcca caggaacaac ttcgtaccat gctaccaaat
      901 acattcacac atccacatca agctactgca gaggcacagt gcactcagaa tgaaaatgag
      961 tctgacagtg atgttgaaga gatcaaaata aaatctccac cactttttat gccagtggaa
     1021 aaattgaata tagagagacc tccaccatct ctaacaatag tagaactgga tgatactcat
     1081 ggagcagaat ttgaagaccc aggaattgct gtgccttaca gagtcgaatt ggctgactca
     1141 gagagtcaac taagttctac atttacggat tatcagactt gcttcccgtg tgaaaatgaa
     1201 atccatcacc atcttatttt caacaaagga aaagcagatc tcttaagtct ctgtttgaga
     1261 acaaattcca ggtatcacaa ggatgacata aaagattttg gcaacactgt ggagtcttgc
     1321 acttattctg atgaattcaa aaaaatagga gaaaccacct cttttgagaa aaatgaaaca
     1381 gagaaaaata tagaccccca aaataacaaa gactctgttg attcctgcat gtcacttggg
     1441 agcaagggtt ccttgccaac catagattca tctacatctt tcatagagga gaattcatct
     1501 caagacacca acacatcatt gaaatgcagc aatcaaaatg agaggtcaaa cttgggaaat
     1561 tcaaaaactg caaaggaacc actgtttcaa aaagtcacca ttaggaaaaa acttataaag
     1621 gaacgatatc aaggacccaa gaagttttat tctgttgata aaaatgaaag actcgatgtc
     1681 ttcccttcat caagcataaa aggcagtcat tcatgttctg agataacatc cacagtttca
     1741 gaagacaaaa tgtggatccc actgagcagc ttaagtgggt atgctggtag tgccgatgcc
     1801 ttgtgtgatc agcaaagtga tgaaaatcca cttccaaata tgcaacagca aaagtcaggc
     1861 cagaaatcac agagaccatc aacagcaaat attcctattt ccaatcccga tcaaaaagac
     1921 accagctgcc ttttgttctc ttacacccga tcaaaaagtg cagctgctca gatgccatcc
     1981 agagctgctt ctgaaatttc agaaattgaa tacattgatg ttactgacca gagtgagctt
     2041 tttggaggta acactgctga tcgacaagcc ttagacactt tggagaaaga attaaatata
     2101 ctgagaaaac ctgcagatcc ttcagaagac cctcacagcc taccctcaga agagttacag
     2161 gcattcaatg acaattttct gactttaagt cagatgtcca aagacctcct tgagatgtca
     2221 cgtgaaagtg acccccatgg agctgagtcc agctcttctg gaagaaatcc tgaaatacag
     2281 cctttgctgt cacttggaga ttacagcacg gatgaggaag aggatgaatt tcttgacaag
     2341 caacatgtca ttaaactgcc gtgggaaaag agggcttaac cgttcactac tcttccattc
     2401 tgtactcaga ataaatcaaa caactgaatg attaa
//
