LOCUS       NM_153566               1558 bp    mRNA    linear   ROD 06-JUN-2024
DEFINITION  Mus musculus yrdC domain containing (E.coli) (Yrdc), mRNA.
ACCESSION   NM_153566
VERSION     NM_153566.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1558)
  AUTHORS   Jiang,W., Prokopenko,O., Wong,L., Inouye,M. and Mirochnitchenko,O.
  TITLE     IRIP, a new ischemia/reperfusion-inducible protein that
            participates in the regulation of transporter activity
  JOURNAL   Mol Cell Biol 25 (15), 6496-6508 (2005)
   PUBMED   16024787
REFERENCE   2  (bases 1 to 1558)
  AUTHORS   Lai,E., Wilson,R.K. and Hood,L.E.
  TITLE     Physical maps of the mouse and human immunoglobulin-like loci
  JOURNAL   Adv Immunol 46, 1-59 (1989)
   PUBMED   2675563
  REMARK    Review article
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK153627.1 and AI413772.1.
            
            On Jul 2, 2009 this sequence version replaced NM_153566.1.
            
            CCDS Note: The coding region has been updated to extend the
            N-terminus to one that is supported by available conservation data.
            The use of an alternative upstream start codon would result in a
            protein that is 17 aa longer at the N-terminal.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK153627.1, BC023823.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: inferred from homology
            RefSeq Select criteria             :: based on single
                                                  protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1380              AK153627.1         1-1380
            1381-1558           AI413772.1         1-178               c
FEATURES             Location/Qualifiers
     source          1..1558
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 57.92 cM"
     gene            1..1558
                     /gene="Yrdc"
                     /gene_synonym="IRIP; ITIP"
                     /note="yrdC domain containing (E.coli)"
                     /db_xref="GeneID:230734"
                     /db_xref="MGI:MGI:2387201"
     exon            1..408
                     /gene="Yrdc"
                     /gene_synonym="IRIP; ITIP"
                     /inference="alignment:Splign:2.1.0"
     CDS             17..859
                     /gene="Yrdc"
                     /gene_synonym="IRIP; ITIP"
                     /EC_number="2.7.7.87"
                     /note="yrdC domain-containing protein, mitochondrial;
                     Ischemia/reperfusion-inducible protein; mIRIP;
                     threonylcarbamoyl-AMP synthase"
                     /codon_start=1
                     /product="threonylcarbamoyl-AMP synthase precursor"
                     /protein_id="NP_705794.2"
                     /db_xref="CCDS:CCDS18628.2"
                     /db_xref="GeneID:230734"
                     /db_xref="MGI:MGI:2387201"
                     /translation="MSTARPCAGLRAAVAAGMGLSDGPASSGRGCRLLRPPEPAPALP
                     GARLLRLPESEPVEAASPERSGWTEALRAAVAELRAGAVVAVPTDTLYGLACSASSSA
                     ALSCVYRLKGRSEAKPLAVCLGRVADVYRYCQVRVPRELLEDLFPGPVTLVMERSEEL
                     NKDLNPFTRLVGIRIPDHAFMLDLAQMFGGPLALTSANLSSQASSLSVEEFQDLWPHL
                     SLVIDGGPIGDSQSPECRLGSTVVDLSVPGKFGIIRPGCALENTTSILQQKYGLLPSQ
                     GSCS"
     exon            409..523
                     /gene="Yrdc"
                     /gene_synonym="IRIP; ITIP"
                     /inference="alignment:Splign:2.1.0"
     exon            524..643
                     /gene="Yrdc"
                     /gene_synonym="IRIP; ITIP"
                     /inference="alignment:Splign:2.1.0"
     exon            644..786
                     /gene="Yrdc"
                     /gene_synonym="IRIP; ITIP"
                     /inference="alignment:Splign:2.1.0"
     exon            787..1554
                     /gene="Yrdc"
                     /gene_synonym="IRIP; ITIP"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1360..1365
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Yrdc"
                     /gene_synonym="IRIP; ITIP"
                     /note="hexamer: AATAAA"
     polyA_site      1381
                     /gene="Yrdc"
                     /gene_synonym="IRIP; ITIP"
                     /note="major polyA site"
     regulatory      1532..1537
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Yrdc"
                     /gene_synonym="IRIP; ITIP"
                     /note="hexamer: ATTAAA"
     polyA_site      1552
                     /gene="Yrdc"
                     /gene_synonym="IRIP; ITIP"
                     /note="major polyA site"
ORIGIN      
        1 aagcggctcg gcacggatgt ctacggcgcg tccgtgcgcg gggctgaggg ccgccgtggc
       61 ggccggcatg gggttgagcg acgggccggc tagttctggc cgcggctgcc gcctcctacg
      121 ccctcctgag cccgctccgg cgctgccggg ggcccggctg ctgcggcttc cggagagcga
      181 gcccgtggaa gccgcgagcc ccgagcgctc cggctggacc gaggcgctgc gggccgccgt
      241 ggccgagctg cgcgccggcg ccgtggtggc ggtcccgacc gacacgctct acggcctggc
      301 ctgctcggcg agcagctcgg cggccctgag ttgcgtgtac cgcctcaaag gccgcagcga
      361 ggccaagccg ctggccgtgt gcctgggccg cgtggccgac gtctacaggt actgtcaggt
      421 gagagtacct agggagctcc tggaagacct gttcccaggc cctgtgaccc tggtgatgga
      481 gcgctccgag gagctcaaca aagacctgaa cccctttact cgtcttgttg gcatccggat
      541 tcctgaccat gccttcatgc tggacttggc ccagatgttt gggggaccac ttgcactcac
      601 tagtgccaac ctcagctccc aggccagttc tctgagtgtt gaggagttcc aagacctctg
      661 gcctcatttg tcccttgtca ttgatggggg gccaattggg gatagtcaga gccctgagtg
      721 tcgcctcggc tctactgtgg ttgacttatc tgtgcctgga aagtttggca ttattcgccc
      781 aggctgtgcc ctggaaaaca ctacatcgat cctccagcag aaatatgggc tgctcccttc
      841 acaggggtcc tgttcatgaa acttgggagg acccaaggac catgctggat actatgtgtc
      901 tgctactgga tggcaaagcc tcactgcctg aggttcctac atctatagcc tagcttttta
      961 ggcagcatcc ttggctctga atcctgtagg ccagccagaa gctgcagggt gagccttgtc
     1021 cccgggggaa ggttatattt atttattctg tacatttatt tgtcagccaa gaattaaatg
     1081 gagggaagga tgttcttaga gtggccttat tattttaagt gccccctctc acccccaccc
     1141 cctttaagta acttgagtac agaattagaa tgcattaaaa gctgctttct ggggaacagt
     1201 gacatttgat gtcaaaccag ccagaagcac taatgcagtc tagaatagaa gtcttaggac
     1261 caacgcagca aagtctagga gccgagggca aagctgtctg ggtacagggg agtggttatt
     1321 ggggaaatta ttctaggggt cccaagtgaa atattgaaaa ataaaatctt gacttttttc
     1381 agccggtgac tttctaattt attggtatag ttttatgtgt aatttattta gcttctttgt
     1441 ttatgcagaa gccttttatc cttgttcata tgtctaccaa gtatttacat aattattttg
     1501 gggtatttga actgtatttt cttttgttgt tattaaatat tgcttctaca aacaaaaa
//
