LOCUS       NM_026350               2169 bp    mRNA    linear   ROD 03-JUN-2024
DEFINITION  Mus musculus YJU2 splicing factor homolog B (Yju2b), transcript
            variant 1, mRNA.
ACCESSION   NM_026350
VERSION     NM_026350.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2169)
  AUTHORS   Pan,J., Mor,G., Ju,W., Zhong,J., Luo,X., Aldo,P.B., Zhong,M.,
            Yu,Y., Jenkins,E.C., Brown,W.T. and Zhong,N.
  TITLE     Viral Infection-Induced Differential Expression of LncRNAs
            Associated with Collagen in Mouse Placentas and Amniotic Sacs
  JOURNAL   Am J Reprod Immunol 74 (3), 237-257 (2015)
   PUBMED   26073538
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CJ148143.1, AK015911.1 and AC122794.3.
            
            On Jun 27, 2014 this sequence version replaced NM_026350.2.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK015911.1, SRR7652917.841501.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164139 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-42                CJ148143.1         4-45
            43-2141             AK015911.1         2-2100
            2142-2169           AC122794.3         46860-46887
FEATURES             Location/Qualifiers
     source          1..2169
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 40.77 cM"
     gene            1..2169
                     /gene="Yju2b"
                     /gene_synonym="4930527D15Rik; Ccdc130"
                     /note="YJU2 splicing factor homolog B"
                     /db_xref="GeneID:67736"
                     /db_xref="MGI:MGI:1914986"
     exon            1..61
                     /gene="Yju2b"
                     /gene_synonym="4930527D15Rik; Ccdc130"
                     /inference="alignment:Splign:2.1.0"
     exon            62..300
                     /gene="Yju2b"
                     /gene_synonym="4930527D15Rik; Ccdc130"
                     /inference="alignment:Splign:2.1.0"
     exon            301..354
                     /gene="Yju2b"
                     /gene_synonym="4930527D15Rik; Ccdc130"
                     /inference="alignment:Splign:2.1.0"
     exon            355..437
                     /gene="Yju2b"
                     /gene_synonym="4930527D15Rik; Ccdc130"
                     /inference="alignment:Splign:2.1.0"
     exon            438..493
                     /gene="Yju2b"
                     /gene_synonym="4930527D15Rik; Ccdc130"
                     /inference="alignment:Splign:2.1.0"
     exon            494..554
                     /gene="Yju2b"
                     /gene_synonym="4930527D15Rik; Ccdc130"
                     /inference="alignment:Splign:2.1.0"
     exon            555..697
                     /gene="Yju2b"
                     /gene_synonym="4930527D15Rik; Ccdc130"
                     /inference="alignment:Splign:2.1.0"
     exon            698..870
                     /gene="Yju2b"
                     /gene_synonym="4930527D15Rik; Ccdc130"
                     /inference="alignment:Splign:2.1.0"
     exon            871..1009
                     /gene="Yju2b"
                     /gene_synonym="4930527D15Rik; Ccdc130"
                     /inference="alignment:Splign:2.1.0"
     exon            1010..2169
                     /gene="Yju2b"
                     /gene_synonym="4930527D15Rik; Ccdc130"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1616..1621
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Yju2b"
                     /gene_synonym="4930527D15Rik; Ccdc130"
                     /note="hexamer: ATTAAA"
     polyA_site      1636
                     /gene="Yju2b"
                     /gene_synonym="4930527D15Rik; Ccdc130"
                     /note="major polyA site"
     regulatory      2152..2157
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Yju2b"
                     /gene_synonym="4930527D15Rik; Ccdc130"
                     /note="hexamer: ATTAAA"
     polyA_site      2169
                     /gene="Yju2b"
                     /gene_synonym="4930527D15Rik; Ccdc130"
ORIGIN      
        1 gggttcctgg ctccgggtgt gcttccgggc tggtggaggc gtgacgtcag ggagagggca
       61 ggctctcctt ggacattcct gtactctttg taggctccgc atcaggttgc aactcagaag
      121 tattgtgaac ttcaagaaat aggaagatcc aagtgacaca gccacacctc tacagaacag
      181 ccgtgtgcgg cctctgaggc tccacaggag ggcacgtctc actgcatctt catgcgttga
      241 ccaggccaat ttcatagttg cagccttgct agtgaggacc tataggcagc tcccaagatg
      301 ggtgaaagga aaggccagaa caagtactac cccccagact tcaaccccga aaagcatggc
      361 tctctcaacc gataccacaa cagccaccca cttcgagaac gggctcggaa gctctcacaa
      421 ggcatccttg ttatccgatt tgaaatgcca tacaacatct ggtgtgacgg ctgtaagaac
      481 cacatcggca tgggtgtgcg ctacaatgca gaaaagaaga aggttggcaa ctattacacg
      541 actccaatct acaggttcag gatgaaatgc cacctctgtg tcaactacat cgagatgcaa
      601 acagaccctg ccaactgtga ctatgtcatc gtgagtggtg ccagtcgcaa ggaggagcgt
      661 tgggacatgg aagacaacga gcaggtgctg accacagagc atgagaagaa agagaagctg
      721 gagacggatg ccatgttccg cctagagcat ggtgaggctg accgcagcac actgaagaag
      781 gccctcccca cactcagcca catccaggaa gcgcagaatg cctggaagga tgacttcgct
      841 ctgaatagca tgctacggag gcacttccgg gagaagaaga aagccatgca ggaggaggaa
      901 gagaaggacc aggcactgca ggcaaaagcc agcctagcca tccctcttgt gccagagtct
      961 gaggatgacc gcaggctggc tgccctgcta aggttgcaca ccctggactc ttatgaggac
     1021 aagcagcgaa tgaagcggac agagatcatc caccgctctt ggttcccctc agcccaggga
     1081 cccagtgcta gcagcagcaa agctagcagc gtcctgaaga agctgtgcca gggccgcaga
     1141 ccacccccca gcagcacagg cacggtgggg gacctgggca tagtgaggag aaagtctcga
     1201 gacgttccag aaagtcctca gtgtgcagca gacaactcct tgtcagaaga acaaagaagg
     1261 ccaccaggaa ccacccaggg tagcaagaca cttgaagagg cagcagaagc atccaggacc
     1321 agcaagacat cagaatccaa gagaaactgt agtgatcagg ccttccccct aggttcctcc
     1381 caggaggacc tgctgaaccc caacaccccc aatgcctccc tggtggctga ctactctgac
     1441 tcagagagcg agtaagggag tcagaattcc aggaccagaa gccatgacgc gtccagacct
     1501 tagggactgg cacattgctg ccagcccaga tacagaccta ccttcctata cagattatta
     1561 tttatttggt tttggtgaga atgcctgtgc cttgatgtaa ccctgatacc tgagcattaa
     1621 agtgctgttc tttgtccctg ccttgtttct aaactcatct agtagctgcc ctgccctcac
     1681 ttccagccaa ctaagcagat gctgctgcat cgttgtgacg gcagtgtggc cccacaaagc
     1741 ccgatgaagg gtttgagata ctgaccaaga ttggccacgg cctggggtga cgtcccctta
     1801 tgaggtgtca aggactacat aaggaaggtt gaaagagggc caggctgctg gagccagaga
     1861 aataaagcta acggcaggca ggaagaacat ccaaactcca tgtcatgggc tggtgtgggt
     1921 cactcatagt ggccagccag tagggatgtt tgtgaaacaa cctcaaaaac accctaatcc
     1981 agccaggcat agtgggcaga caaccgtcat cctggcaccc cagcaataga gacaaggtgt
     2041 ggtccagctt taaaataggg tttctcatgt atccctggct gtcctggaac tcgttctgta
     2101 actattgtgg agccagattc acaaatatat ctctacctcc tgaatgctgg aattaaaatc
     2161 tgaggttta
//
